Basic Information | |
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Family ID | F105283 |
Family Type | Metagenome |
Number of Sequences | 100 |
Average Sequence Length | 42 residues |
Representative Sequence | FLALVLAAGIAWFPRGNGSIADAEREARALASEETARESPLS |
Number of Associated Samples | 80 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 91.00 % |
% of genes from short scaffolds (< 2000 bps) | 88.00 % |
Associated GOLD sequencing projects | 78 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.31 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (71.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (14.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (26.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 37.14% β-sheet: 0.00% Coil/Unstructured: 62.86% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Grass Soil Surface Soil Switchgrass Rhizosphere Soil Agricultural Soil Soil Grasslands Soil Grass Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Forest Soil Soil Hardwood Forest Soil Prmafrost Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Arabidopsis Rhizosphere Tabebuia Heterophylla Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPIPI_02888320 | 2088090014 | Soil | IVFLALVLAAGIAWFPRGXXXXXXXXREARALASEETAREGPLS |
GPIPI_02229470 | 2088090014 | Soil | LAVVLAAGIAWFPRGSGSIADAXXXXXXLASEETARERPLS |
E41_10335150 | 2170459005 | Grass Soil | LALVLAAGFAWFPRGKDAIADAEREEQALESEETAREGPL |
FA3_10042350 | 2170459023 | Grass Soil | VFLALVLAAGIVWFPRGSGSIADAEREARALASEETTRESPLS |
JGI10216J12902_1091892951 | 3300000956 | Soil | FLALVLAAGIGWFPRGSGSIADAEHEAQALASEETARESPLS* |
JGI24036J26619_100371993 | 3300002128 | Corn, Switchgrass And Miscanthus Rhizosphere | LVLAAGIAWFPRSKGSIADAEREARALASEETARESPLS* |
JGIcombinedJ43975_100480411 | 3300002899 | Soil | LVLAAGIAWFPRGSGSIADAEREARALASKETARESPLS* |
Ga0062590_1013545312 | 3300004157 | Soil | VFLALVLAAGIAWFPRGNGFIADAKREARALASEETARESPRS* |
Ga0066398_102067791 | 3300004268 | Tropical Forest Soil | LLALVLAAGFAWFPRAKGSIADAERGAKALTSEETAREGSSL* |
Ga0062595_1018339182 | 3300004479 | Soil | LATAIAFLAVVLAAGIVWFPRGSGSIAGAEREARALTSEETARENPLS* |
Ga0062595_1022360071 | 3300004479 | Soil | MVFLALVLAAGIAWFPRGKGSMADAEHEARALASDETATESPLS* |
Ga0066672_106212871 | 3300005167 | Soil | RFSLATAIVFLALVLAAGIAWFPRGSGSIAGAEREAQALASEETARESPLS* |
Ga0066685_106004752 | 3300005180 | Soil | FLAVVLAAGIAWFPRGSGSIADAQREARALASEETARESPLS* |
Ga0066676_104580392 | 3300005186 | Soil | FLAVVLAAGIAWFPRGSGSIADAQREARPLASEETARESPLS* |
Ga0065705_100617701 | 3300005294 | Switchgrass Rhizosphere | AMVFLALVLAAGFAWFPRGKGAIADAEREAQAIASEETARESPLS* |
Ga0065705_104556551 | 3300005294 | Switchgrass Rhizosphere | LALVLAAGFAWFPRGKGVIADAEREAQALESEEAAREGPL* |
Ga0065707_105022701 | 3300005295 | Switchgrass Rhizosphere | LALVLAAGIAWFPRGSGSIADAEREARALVSEETARESPIS* |
Ga0066388_1000088089 | 3300005332 | Tropical Forest Soil | MAMVFLALVLAAGFAWFPRGKGAIADAEREAQALESEESTREIPLS* |
Ga0066388_1000568534 | 3300005332 | Tropical Forest Soil | AMVLLALVLAAGFAWFPRGKGAIADAEREASALESEETAREGPL* |
Ga0066388_1082326351 | 3300005332 | Tropical Forest Soil | LALVLAAGFAWFPRGKGAIADAEREAQALESEETAREGPL* |
Ga0070711_1009214872 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | TAIVFLALVLAAGIVWFPRGSGSIAGAEREARALASEETTRESPLS* |
Ga0070705_1016153041 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | FSLATAMVFLALVLAAGFAWFPRGKGAIADAEREAQALESEETAREGPL* |
Ga0070662_1006197031 | 3300005457 | Corn Rhizosphere | FLALVLAAGIVWFPLGSGSIADAEHEARALASEETTRESPLS* |
Ga0070698_10000240625 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | ALVLAAGFAWFPRAKGSNADAERGAKALASEETARESHLSYD* |
Ga0070698_1000118841 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | ALVLAAGFAWFPRAKGSNADAERGAKALASEETARESHL* |
Ga0070741_110285361 | 3300005529 | Surface Soil | LAAGIAWFPRGRGSIAGAEREARTLASEEAASENPAG* |
Ga0066697_107435431 | 3300005540 | Soil | AAGIVWFPRGSGSIADAEHEARTLASEETARESPLS* |
Ga0066905_1016815383 | 3300005713 | Tropical Forest Soil | AAGFAWFPRGKGAIADAERGAKALESEETARESTL* |
Ga0066905_1017988991 | 3300005713 | Tropical Forest Soil | TAILILALVLAAGYAWFPRGKGGLADARREARAVSSEEAIREPG* |
Ga0066903_1022652521 | 3300005764 | Tropical Forest Soil | FLALVLAAGIAWFPRGRGSIADAQREARALTSEETARESPLS* |
Ga0066903_1030719782 | 3300005764 | Tropical Forest Soil | VVLAAGILWFPRGRGSIADAEREARALTSEETARESPLS* |
Ga0066903_1073943781 | 3300005764 | Tropical Forest Soil | AAGIVWFPRGKGSIVDAEREARALASEETVRESPLS* |
Ga0081539_102049121 | 3300005985 | Tabebuia Heterophylla Rhizosphere | AAGIAWFPRGSGSIANAEREARALASEETARESPLS* |
Ga0080027_103969631 | 3300005993 | Prmafrost Soil | VFLALVLAAGFAWFPRGKGSVADAEREARAIASEENAGLS* |
Ga0068871_1009191461 | 3300006358 | Miscanthus Rhizosphere | SLATAIVFLAIVLAAGIAWFPRGEGSIAGAEREAQALASEETARESPLS* |
Ga0075430_1006302271 | 3300006846 | Populus Rhizosphere | VKIEDRPTAAGFAWFPRGKGADAEREAEALESEETA |
Ga0075429_1011382121 | 3300006880 | Populus Rhizosphere | ATAMVLLALVLAAGFVWFPRGKHSIADAEREARAVASEEAVRESLLRRE* |
Ga0075424_1001727725 | 3300006904 | Populus Rhizosphere | FLALVLAAGIAWFPPGKSSIADAEREARALASDETARESPPS* |
Ga0079219_100581663 | 3300006954 | Agricultural Soil | FLVLVLAAGIAWFPRGNGSIADAEREARALKSEETARNSSLS* |
Ga0079219_120633562 | 3300006954 | Agricultural Soil | VLAAGIAWFPRGKGSMADAERQARALASEETARESPLS* |
Ga0075419_102274082 | 3300006969 | Populus Rhizosphere | VKIEDRPTAAGFAWFPRGKGADAEREAEALESEETAREGPL* |
Ga0075419_108284942 | 3300006969 | Populus Rhizosphere | VKIEDRPTAAGFAWFPRGKGAIADAEREEQALESEETAREGPL* |
Ga0105095_102743893 | 3300009053 | Freshwater Sediment | LVLALVLAAGVAWFPKGRGGIADAAREASALESEEARRGSPEGAGIG* |
Ga0099827_118812872 | 3300009090 | Vadose Zone Soil | FLALVLAAGIAWFPRGNGSIADAEREARALASEETARESPLS* |
Ga0105245_123668691 | 3300009098 | Miscanthus Rhizosphere | VFLALVLAAGITWFPRGTGSIADAEREARALASEETARESPLS* |
Ga0066709_1022908022 | 3300009137 | Grasslands Soil | AAGIVWFPRGSGSIAGAEREARTLASEETARESPLS* |
Ga0114129_100810441 | 3300009147 | Populus Rhizosphere | LVLAAGIGWFPRGKRSIADAEREARALASEESARESPPS* |
Ga0114129_131000462 | 3300009147 | Populus Rhizosphere | FLALVLAAGFAWFPRGKGAIADAEREAQALESEETAREGPL* |
Ga0111538_107181611 | 3300009156 | Populus Rhizosphere | FLTLVLAAGFAWFPRGKGAIADAEREARALESEETAREGPL* |
Ga0111538_138445892 | 3300009156 | Populus Rhizosphere | VFLVVVLAAGIAWFPRGSGSIADAEREARALASEETARESPLS* |
Ga0126384_100842482 | 3300010046 | Tropical Forest Soil | MVLLALVLAAGFAWFPRGKGAIADAEREARALESEETAREGPL* |
Ga0126384_115505282 | 3300010046 | Tropical Forest Soil | VLLTLVLAAGFAWFPRGKGSIVEAEREAQALTSEEAARESNLS* |
Ga0126384_123970401 | 3300010046 | Tropical Forest Soil | LATAMVLLALVLASGFAWFPRGRGAITDAEREAQALESEEAAREGPL* |
Ga0126382_118505931 | 3300010047 | Tropical Forest Soil | VLLALVLAAGFAWFPRGKGAITDAEREAQALESEEAAREGPL* |
Ga0134063_103461142 | 3300010335 | Grasslands Soil | VLAAGIAWFPRGSGSIAGAEREAQALTSEETARESPLS* |
Ga0134062_104699371 | 3300010337 | Grasslands Soil | AAGIAWFPRGSGSIAGAEREAQALTSEETARESPLS* |
Ga0126378_112043211 | 3300010361 | Tropical Forest Soil | AIVLAGGIVWFPRGSGSIAGAEREARALASEETARESPPQNR* |
Ga0126378_123902242 | 3300010361 | Tropical Forest Soil | AGFVWFPRGSGSIADAEREARALASEESARESPLS* |
Ga0126378_128296892 | 3300010361 | Tropical Forest Soil | VFLAVVLAVGIAWFPRGSGSIADAKREARALASEETARESPLS* |
Ga0126379_101729022 | 3300010366 | Tropical Forest Soil | MVFLALVLAGGIAWFPRGKGSVADAEREAHALAFEETTRETPLS* |
Ga0126379_137259912 | 3300010366 | Tropical Forest Soil | AIAFLTVVLAAGILWFPRGRGSIAGAEREARSLASEETARESPLS* |
Ga0105239_109518023 | 3300010375 | Corn Rhizosphere | TAGFTWFPRGKGSIVANAEREAQALASEETARESPLS* |
Ga0126381_1047615711 | 3300010376 | Tropical Forest Soil | AGILWFPRGRGSIADAEREARALTSEETARESPLS* |
Ga0126383_101597034 | 3300010398 | Tropical Forest Soil | LVLAAGFAWFPRGKGAIADAEREARALESEETAREGPL* |
Ga0134122_130233872 | 3300010400 | Terrestrial Soil | IAFLAVVLAAGIAWFPRGSGSIAGAEREARALASEETARESPLS* |
Ga0137382_101891553 | 3300012200 | Vadose Zone Soil | FSLATAIAFLAVVLAAGIVWFPRGSGSIADAQREARVLASEETARESPLS* |
Ga0137363_116455291 | 3300012202 | Vadose Zone Soil | MVFLALVLAAGFAWFPRGKGAIADAEREEQALASEETAREGPL* |
Ga0137399_114544032 | 3300012203 | Vadose Zone Soil | LAVVLAAGIAWFPRGSGSIANAEREAQALASEETARESPLS* |
Ga0137380_103262643 | 3300012206 | Vadose Zone Soil | ATAIVFLGLVLAAGIVWFPRGKGSIADAEHEAKALASDETARESPLS* |
Ga0137376_117133932 | 3300012208 | Vadose Zone Soil | FLAVVLAAGIAWFPRGSGSIANAEREARALASEETAPESPLS* |
Ga0137370_105909381 | 3300012285 | Vadose Zone Soil | VVLAAGIAWFPRGSGSITNAKREARALASEETAPESPLS* |
Ga0137372_106442591 | 3300012350 | Vadose Zone Soil | TAIVFLALVLAAGIAWFPRGNGSIADAEREARALASEETARESPLS* |
Ga0137413_104494982 | 3300012924 | Vadose Zone Soil | VTAIAFLAVVLAAGIAWFPRGSGSIADAQREARALASEETARESPLS* |
Ga0126375_115441381 | 3300012948 | Tropical Forest Soil | IVFLALVLAAGFAWFPRGKGSIADAEREARELASEETARESPLS* |
Ga0164300_102438861 | 3300012951 | Soil | LALILAAGIAWFPRGKGSMADAEHEARALASEETARETPLS* |
Ga0164299_109601501 | 3300012958 | Soil | LVLAAGIAWFPRGNGSLADAEREARALGSEETARESPRS* |
Ga0126369_110359722 | 3300012971 | Tropical Forest Soil | VVLAAGIVWFPRGSGSIAGAEREARALASEETAHENPLS* |
Ga0126369_129303481 | 3300012971 | Tropical Forest Soil | FSLATAIVFLGLVLAAGIAWFPRGKGSMADAEHEARALASEETARETPLS* |
Ga0132255_1021126063 | 3300015374 | Arabidopsis Rhizosphere | MVFLTLVLAAGFVWFPRGKGAIADAEREEQALESEETAREGPL* |
Ga0182040_110794801 | 3300016387 | Soil | LATAIVFLGLVLAAGILWFPRGGGSIIGAEREARALASEETARESPLS |
Ga0184632_100095213 | 3300018075 | Groundwater Sediment | FSLATAMVFLALVLAAGFAWFPRGKGAIADAEREARALASETAREGPL |
Ga0193726_12570141 | 3300020021 | Soil | VLAAGIAWFPRGSGSIADAEREARTLASEETARESPLS |
Ga0193724_10772572 | 3300020062 | Soil | ATAIVFLTIVLAAGMVWFPRGSGSIADAEREARALASEETARESPLS |
Ga0193709_10833422 | 3300021411 | Soil | FLAVVLAAGIAWFPRGSGSIADAQREARALASEETARESPLS |
Ga0222623_101308262 | 3300022694 | Groundwater Sediment | FLAVVLAAGIAWFPRGSGSIANAEREARALASEETARESPLS |
Ga0207693_103880842 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MVFLALVLAAGFAWFPRGKGAIADAEREAQALESEETAREGPL |
Ga0207706_109272871 | 3300025933 | Corn Rhizosphere | LAAGIVWFPLGSGSIADAEHEARALASEETTRESPLS |
Ga0209799_11675352 | 3300027654 | Tropical Forest Soil | LLALVLAAGFAWFPRAKGSIADAERGAKALTSEETAREGSSL |
Ga0307307_102828191 | 3300028718 | Soil | VLAAGMVWFPRGSGSIADAEREARTLESEETASESPLS |
Ga0307312_104984841 | 3300028828 | Soil | LATAIVFLAVVLAAGIVWFPRGSGSIADAEREARTLESEETASESPLS |
Ga0170823_156680204 | 3300031128 | Forest Soil | FLAVVLAAGIAWFPRGSGSIADAEREAQTLASEETARESPLS |
Ga0265328_100450471 | 3300031239 | Rhizosphere | VVLLCLVLAAGLKWFPRGKGGIADATREQKSLESEESSRAGPESAGLG |
Ga0170820_136295011 | 3300031446 | Forest Soil | AIGFLALVLAAGIAWFPRGSGSIADAESEARALASEETARESPLS |
Ga0310915_103704843 | 3300031573 | Soil | LVLAAGIAWFPRGKSSIADAEREARALASDETARESPPS |
Ga0318560_106884332 | 3300031682 | Soil | IVFLAIVLAAGIAWFPRGSGSITDAKCEARALASEETARESPLS |
Ga0318546_107975761 | 3300031771 | Soil | LTLVLAAGITWFPRGKGSMADAEHEARALTSDETARENPLS |
Ga0307473_106514681 | 3300031820 | Hardwood Forest Soil | ATAILFLTVVLVAGIAWFPRGSGSIADAESEARALASEETARESPLS |
Ga0307479_113936711 | 3300031962 | Hardwood Forest Soil | LAVVLAAGIAWFPRGSGSIADAEREARALVSEETARESPLS |
Ga0318519_105770693 | 3300033290 | Soil | AAGIAWFPRGSGSITDAKCEARALASEETARESPLS |
Ga0318519_106458451 | 3300033290 | Soil | AIVFLAVVLAAGIAWFPRGSGSIAGAEREAQALASEETARESPLS |
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