Basic Information | |
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Family ID | F105205 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 50 residues |
Representative Sequence | MRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFEK |
Number of Associated Samples | 64 |
Number of Associated Scaffolds | 99 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Archaea |
% of genes with valid RBS motifs | 49.00 % |
% of genes near scaffold ends (potentially truncated) | 38.00 % |
% of genes from short scaffolds (< 2000 bps) | 75.00 % |
Associated GOLD sequencing projects | 58 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Archaea (96.000 % of family members) |
NCBI Taxonomy ID | 2157 |
Taxonomy | All Organisms → cellular organisms → Archaea |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine (20.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (53.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (44.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 24.36% β-sheet: 7.69% Coil/Unstructured: 67.95% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Marine Sediment Deep Subsurface Marine Seawater Marine Marine Marine Marine Deep Subsurface Sediment |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
SI39nov09_120mDRAFT_10427403 | 3300000167 | Marine | MRCKICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGEYWRMEN* |
SI34jun09_200mDRAFT_10485323 | 3300000172 | Marine | MRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIKN* |
SI48aug10_150mDRAFT_10104961 | 3300000200 | Marine | KEIRLMRCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK* |
JGI26061J44794_10673932 | 3300002919 | Marine | KICEITHKNTAKYDLWIENQMCKVCGQILDFFSWNGNNLGEYWRFGK* |
JGI26238J51125_10042585 | 3300003478 | Marine | MRCKICXXPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK* |
JGI26245J51145_10051155 | 3300003492 | Marine | MRCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK* |
JGI26239J51126_10045348 | 3300003498 | Marine | MRCKICEIPHKNTGKYDLWLEHKVXRVCGSLFDLFSWNGNYLVEYWRSGK* |
JGI26239J51126_10745173 | 3300003498 | Marine | ICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH* |
JGI26259J51720_10334832 | 3300003593 | Marine | LIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK* |
JGI26258J51719_10076625 | 3300003594 | Marine | RCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK* |
JGI26263J51726_10769713 | 3300003595 | Marine | GEKKMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH* |
Ga0063241_10121769 | 3300003894 | Marine | MRCKICQITHKNTGKYDLWVEYQVCRICAQMLELFSWNGNNLGEYWGVRN* |
Ga0008650_10563641 | 3300004109 | Marine | PHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK* |
Ga0008648_101464651 | 3300004110 | Marine | KNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH* |
Ga0066608_11570421 | 3300004273 | Marine | KMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH* |
Ga0066610_102298873 | 3300004276 | Marine | HKNTAKYDLWLEHQVCRDCGNLFDLFSWNGNNLGAYWRIGN* |
Ga0066606_102407823 | 3300004280 | Marine | CKICDITHKNTSKYDLWIENQVCRICGQVLDFFSWNGNNLGDYWRIGK* |
Ga0008649_100022398 | 3300005838 | Marine | MRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH* |
Ga0008649_100405672 | 3300005838 | Marine | MRCKICDITHKNTSKYDLWIENQVCRVCGQVLDFFSWNGNNLGDYWRIGK* |
Ga0008649_101230565 | 3300005838 | Marine | PHKNTSKFDLWVENQVCRTCSQIIDLFSWNGNNLGEYWRFVN* |
Ga0066369_102095352 | 3300005969 | Marine | MRCKICEITHKNTAKYDLWIENQMCKVCGQILDFFSWNGNNLGEYWRFGK* |
Ga0082250_100448393 | 3300006465 | Sediment | MRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFEK* |
Ga0082251_102243493 | 3300006468 | Sediment | MRCKICNIPHKNTSKYDLWLENQVCRVCAHILDLFSWNGNNLGEYWRFSN* |
Ga0066376_102567854 | 3300006900 | Marine | MRCKICEITHKNTAKYDLWIENQMCRVCGQILDFFSWNGNNLGEYWRFGK* |
Ga0115371_106293002 | 3300008470 | Sediment | EKKMRCKICNIPHKNTAKYDLWIENQVCRVCGQILDLFSWNGNNLGEYWRFRN* |
Ga0115371_109390293 | 3300008470 | Sediment | MRCKICEIPHKNTSKFDLSIENQVCRTCGQILDLFSWNGNNLGGYWRFGN* |
Ga0115656_11334805 | 3300008627 | Marine | MKLTKSGGIKMRCKICEIPHKNTAKFDLWKENQVCRICGQLFDLFSWNGNNLGEYWRIGN |
Ga0115656_11850663 | 3300008627 | Marine | MRCKICEIPHKNTRKYDLWIENQVCRVCGHLMDFFSLNGNNLGHYWRIGN* |
Ga0114950_100568128 | 3300009030 | Deep Subsurface | MRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLEEYWRFSN* |
Ga0114950_103421552 | 3300009030 | Deep Subsurface | MRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWGSGK* |
Ga0114950_103437781 | 3300009030 | Deep Subsurface | CKICNIPHKNTSQHELWIENQVCRICGHILDLFSWNGNNLGEYWRFGK* |
Ga0114950_103890624 | 3300009030 | Deep Subsurface | MRCKICDISHKNTGKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN* |
Ga0114950_107200193 | 3300009030 | Deep Subsurface | MRCKICNIPHKNTSKYDLWLENQVCRVCAHILDLFSWNGNNLGEYWRFGK* |
Ga0114950_112780402 | 3300009030 | Deep Subsurface | MRCKICNIPHKNTSKHEFWLEYQVCRICGQILDLFSWNGNNLGEYWRFGK* |
Ga0114950_113357261 | 3300009030 | Deep Subsurface | MRCKICEIPHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRFGK* |
Ga0114950_113776683 | 3300009030 | Deep Subsurface | MRCKICNTPHKITAKYDLWLENQVCRVFGQILDLFSWNGNNLG |
Ga0114948_111348642 | 3300009102 | Deep Subsurface | MRCKICDIPHKNTGKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN* |
Ga0117917_10445832 | 3300009106 | Marine | MRCKICEIPHKNTAKYDLWIENQVCRICGQLMDFFSLNGNNLGEYWRFGN* |
Ga0114949_108004272 | 3300009139 | Deep Subsurface | MRCKICNIPHKNTGKYDLWIENQVCRVCGQILDLFSWNGNNLEEYWRFSN* |
Ga0114949_108149613 | 3300009139 | Deep Subsurface | LGYEKMRCKICNTPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN* |
Ga0114949_110467361 | 3300009139 | Deep Subsurface | MRCKICNIPHKNTAKYDLWIENQVCRVCAQILDLFSWNGNNLGEYWRF |
Ga0114949_113684502 | 3300009139 | Deep Subsurface | MRCKICNIPHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRFGK* |
Ga0114932_100411986 | 3300009481 | Deep Subsurface | MRCKICNISHKNTGKYDLWLDNQICRVCGQIFDFFSWNGNNLENYWRCEK* |
Ga0114932_105381342 | 3300009481 | Deep Subsurface | MRCKICDISHKNTGKYDLWIDNQICRVCGQVLDFFSWNGNNLESYWRYEN* |
Ga0114933_100214408 | 3300009703 | Deep Subsurface | MSMRCKICDISHKNTGKYDLWLENQVCRFCGQIIDLFSWNGN |
Ga0114933_103740923 | 3300009703 | Deep Subsurface | MRCKICNISHKNTGKYDLWLDNQICRVCGQIFDFFSWNGNNLENYWRNEN* |
Ga0114933_108816312 | 3300009703 | Deep Subsurface | MRCKICEITHKNTSKYDLWLENQMCRGCCQLFDIFSWNGNN |
Ga0123372_1032792 | 3300009725 | Marine | MRCKICQITHKNTGKYDLWTEYQVCRICGQILDLFTWNGNNLGEYWKKEAIA* |
Ga0123363_10363133 | 3300009747 | Marine | MRCKICQITHKNTGKYDLWTEHQVCRVCGQMLDLFSWNGNNLGEYWKKEVIAQ* |
Ga0123370_10692643 | 3300009748 | Marine | MRCKICQITHKNTGKYDLWTEHQVCRICGQILDLFTWNGNNLGE |
Ga0123370_11157631 | 3300009748 | Marine | RVGQNFGGNKMRCKICQITHKNTGKYDLWTEYQVCRICGQILDLFTWNGNNLGEYWKKEAIA* |
Ga0123360_10201103 | 3300009753 | Marine | MRCKICQITHKNTGKYDLWTEHQVCRICGQILDLFTWNGNNLGEYWKKEAIA* |
Ga0123360_11438401 | 3300009753 | Marine | MRCKICQITHKNTGKYALWTEHQVCRVCGQMLDLFSWNGNNLGEY |
Ga0123382_10119002 | 3300010135 | Marine | MRCKICQITHKNTGKYDLWTEHQVCRVCGQMLDFFSWNGNNLGEYWKKQVIAQ* |
Ga0114934_103179401 | 3300011013 | Deep Subsurface | EKMRCKICDISHKNTGKYDLWIDNQICRVCGQVLDFFSWNGNNLESYWRYEN* |
Ga0114947_108416562 | 3300011112 | Deep Subsurface | MRCKICNIPHKNTAKYDLWIENQVCRVCGQILDLFSWNGNNLGEYWRFSN* |
Ga0212167_12834893 | 3300020230 | Sediment | MRCKICNITHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRFGK |
Ga0212168_12925656 | 3300020231 | Sediment | MRCKICNIPHKNTAKYDLWIENQVCRVCAQILDLFSWNGNNLGEYWRFSN |
Ga0212227_12380623 | 3300020234 | Sediment | MRCKICEIPHKNTGKYDLWTENQVCRICGQILDLFSWNGNNLREYWRFGK |
Ga0212227_13514095 | 3300020234 | Sediment | MRCKICNIPHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRLSN |
Ga0212227_13757053 | 3300020234 | Sediment | MRCKICQISHKNTAKYDLWLENQVCRVCGQIMDLFSWNGNNLSEYWRFSN |
Ga0212227_14269554 | 3300020234 | Sediment | MRCKICDISHKNTGKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN |
Ga0212228_11128913 | 3300020235 | Sediment | MRCKICNIPHKNTGKYDLWVENQVCRVCGQILDLFSWNGNNLGEYWRFGK |
Ga0212228_11928042 | 3300020235 | Sediment | MRCKICNIPHKNTSKHEFWLEYQVCRICGQILDLFSWNGNNLGEYWRFGK |
Ga0212228_13171901 | 3300020235 | Sediment | MRCKICDIPHKNTGRHELWIEQRICRICAQILDLFSWNGNYLQEYWRTLN |
Ga0212228_14098413 | 3300020235 | Sediment | MRCKICEIPHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRFGK |
Ga0212228_14098415 | 3300020235 | Sediment | CKICNIPHKNTSQHELWIENQVCRICGHILDLFSWNGNNLGEYWRFGK |
Ga0212228_14506073 | 3300020235 | Sediment | MRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWGSGK |
(restricted) Ga0233428_10073058 | 3300022888 | Seawater | MRCKICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGEYWRMEN |
(restricted) Ga0233428_10194555 | 3300022888 | Seawater | MRCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK |
(restricted) Ga0233428_11542893 | 3300022888 | Seawater | MRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIKN |
(restricted) Ga0233429_10941892 | 3300022902 | Seawater | VRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIEN |
(restricted) Ga0233429_11019811 | 3300022902 | Seawater | QNLGNEKLRCKICQITHKNTAKYDLWLEHQVCRDCGNLFDLFSWNGNNLGAYWRIGN |
(restricted) Ga0233427_100254016 | 3300022933 | Seawater | MRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH |
Ga0209997_103273441 | 3300024058 | Deep Subsurface | MDKVTTSLENKAGGTKMRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNL |
Ga0209987_100395287 | 3300024060 | Deep Subsurface | MRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLEEYWRFSN |
(restricted) Ga0233446_11875661 | 3300024256 | Seawater | KNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH |
(restricted) Ga0233442_11542951 | 3300024257 | Seawater | MRCKICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGE |
(restricted) Ga0233441_12390071 | 3300024260 | Seawater | MRCKICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGEYWRME |
(restricted) Ga0233448_11252101 | 3300024299 | Seawater | MRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEY |
(restricted) Ga0233449_10185158 | 3300024302 | Seawater | FKNSTRKREDEIMRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIKN |
(restricted) Ga0233434_12655672 | 3300024327 | Seawater | MRCKICEIPHKNTAKYDLWIQNQVCRVCGHLLDFFTLNGNNLGEYWRFVN |
(restricted) Ga0233434_13337762 | 3300024327 | Seawater | MRCKICEIPHKNTTKYDLWLEHKVCRVCGSLFDLFSWNGNNLGEYWRIEN |
Ga0209992_100010723 | 3300024344 | Deep Subsurface | MRCKICDISHKNTGKYDLWIDNQICRVCGQVLDFFSWNGNNLESYWRYEN |
Ga0209992_100152716 | 3300024344 | Deep Subsurface | MRCKICNISHKNTGKYDLWLDNQICRVCGQIFDFFSWNGNNLENYWRCEK |
Ga0209992_100189236 | 3300024344 | Deep Subsurface | MSMRCKICDISHKNTGKYDLWLENQVCRFCGQIIDLFSWNGNNLEAYWRYDIDVSKM |
Ga0209992_100238135 | 3300024344 | Deep Subsurface | MRCKICNISHKNTGKYDLWLDNQICRVCGQIFDFFSWNGNNLENYWRNEN |
Ga0209988_101471281 | 3300024431 | Deep Subsurface | TGKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN |
Ga0209556_11124302 | 3300025547 | Marine | MRCKICDITHKNTSKYDLWIENQVCRVCGQVLDFFSWNGNNLGDYWRIGK |
Ga0209045_11601891 | 3300025660 | Marine | ICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGEYWRMEN |
Ga0209043_11355133 | 3300025667 | Marine | RKDLGEKKMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH |
Ga0209663_10908035 | 3300025672 | Marine | MRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWR |
Ga0209263_101534111 | 3300025681 | Marine | MRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRF |
Ga0209140_11470733 | 3300025688 | Marine | MRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLGEYWRFKH |
Ga0208879_10510944 | 3300026253 | Marine | MRCKICEITHKNTAKYDLWIENQMCKVCGQILDFFSWNGNNLGEYWRFGK |
Ga0257118_10905621 | 3300028173 | Marine | THKNTAKYDLWLEHQVCRDCGNLFDLFSWNGNNLGAYWRIGN |
Ga0257123_10821332 | 3300028174 | Marine | MRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIEN |
Ga0257117_10621591 | 3300028175 | Marine | MRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLGEYWRNKI |
Ga0257121_10098439 | 3300028198 | Marine | MRCKICEITHKNTSKYDLWLENQMCRVCCQLLDIFSWNGNNLGEYWRFVN |
Ga0257121_10366666 | 3300028198 | Marine | FGGGKMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH |
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