NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105205

Metagenome / Metatranscriptome Family F105205

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105205
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 50 residues
Representative Sequence MRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFEK
Number of Associated Samples 64
Number of Associated Scaffolds 99

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Archaea
% of genes with valid RBS motifs 49.00 %
% of genes near scaffold ends (potentially truncated) 38.00 %
% of genes from short scaffolds (< 2000 bps) 75.00 %
Associated GOLD sequencing projects 58
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Archaea (96.000 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(53.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(44.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.
1SI39nov09_120mDRAFT_10427403
2SI34jun09_200mDRAFT_10485323
3SI48aug10_150mDRAFT_10104961
4JGI26061J44794_10673932
5JGI26238J51125_10042585
6JGI26245J51145_10051155
7JGI26239J51126_10045348
8JGI26239J51126_10745173
9JGI26259J51720_10334832
10JGI26258J51719_10076625
11JGI26263J51726_10769713
12Ga0063241_10121769
13Ga0008650_10563641
14Ga0008648_101464651
15Ga0066608_11570421
16Ga0066610_102298873
17Ga0066606_102407823
18Ga0008649_100022398
19Ga0008649_100405672
20Ga0008649_101230565
21Ga0066369_102095352
22Ga0082250_100448393
23Ga0082251_102243493
24Ga0066376_102567854
25Ga0115371_106293002
26Ga0115371_109390293
27Ga0115656_11334805
28Ga0115656_11850663
29Ga0114950_100568128
30Ga0114950_103421552
31Ga0114950_103437781
32Ga0114950_103890624
33Ga0114950_107200193
34Ga0114950_112780402
35Ga0114950_113357261
36Ga0114950_113776683
37Ga0114948_111348642
38Ga0117917_10445832
39Ga0114949_108004272
40Ga0114949_108149613
41Ga0114949_110467361
42Ga0114949_113684502
43Ga0114932_100411986
44Ga0114932_105381342
45Ga0114933_100214408
46Ga0114933_103740923
47Ga0114933_108816312
48Ga0123372_1032792
49Ga0123363_10363133
50Ga0123370_10692643
51Ga0123370_11157631
52Ga0123360_10201103
53Ga0123360_11438401
54Ga0123382_10119002
55Ga0114934_103179401
56Ga0114947_108416562
57Ga0212167_12834893
58Ga0212168_12925656
59Ga0212227_12380623
60Ga0212227_13514095
61Ga0212227_13757053
62Ga0212227_14269554
63Ga0212228_11128913
64Ga0212228_11928042
65Ga0212228_13171901
66Ga0212228_14098413
67Ga0212228_14098415
68Ga0212228_14506073
69Ga0233428_10073058
70Ga0233428_10194555
71Ga0233428_11542893
72Ga0233429_10941892
73Ga0233429_11019811
74Ga0233427_100254016
75Ga0209997_103273441
76Ga0209987_100395287
77Ga0233446_11875661
78Ga0233442_11542951
79Ga0233441_12390071
80Ga0233448_11252101
81Ga0233449_10185158
82Ga0233434_12655672
83Ga0233434_13337762
84Ga0209992_100010723
85Ga0209992_100152716
86Ga0209992_100189236
87Ga0209992_100238135
88Ga0209988_101471281
89Ga0209556_11124302
90Ga0209045_11601891
91Ga0209043_11355133
92Ga0209663_10908035
93Ga0209263_101534111
94Ga0209140_11470733
95Ga0208879_10510944
96Ga0257118_10905621
97Ga0257123_10821332
98Ga0257117_10621591
99Ga0257121_10098439
100Ga0257121_10366666
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 24.36%    β-sheet: 7.69%    Coil/Unstructured: 67.95%
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5101520253035404550MRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFEKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Sediment
Deep Subsurface
Marine
Seawater
Marine
Marine
Marine
Marine
Deep Subsurface
Sediment
11.0%14.0%17.0%5.0%13.0%3.0%20.0%4.0%10.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI39nov09_120mDRAFT_104274033300000167MarineMRCKICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGEYWRMEN*
SI34jun09_200mDRAFT_104853233300000172MarineMRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIKN*
SI48aug10_150mDRAFT_101049613300000200MarineKEIRLMRCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
JGI26061J44794_106739323300002919MarineKICEITHKNTAKYDLWIENQMCKVCGQILDFFSWNGNNLGEYWRFGK*
JGI26238J51125_100425853300003478MarineMRCKICXXPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
JGI26245J51145_100511553300003492MarineMRCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
JGI26239J51126_100453483300003498MarineMRCKICEIPHKNTGKYDLWLEHKVXRVCGSLFDLFSWNGNYLVEYWRSGK*
JGI26239J51126_107451733300003498MarineICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH*
JGI26259J51720_103348323300003593MarineLIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
JGI26258J51719_100766253300003594MarineRCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
JGI26263J51726_107697133300003595MarineGEKKMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH*
Ga0063241_101217693300003894MarineMRCKICQITHKNTGKYDLWVEYQVCRICAQMLELFSWNGNNLGEYWGVRN*
Ga0008650_105636413300004109MarinePHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
Ga0008648_1014646513300004110MarineKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH*
Ga0066608_115704213300004273MarineKMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH*
Ga0066610_1022988733300004276MarineHKNTAKYDLWLEHQVCRDCGNLFDLFSWNGNNLGAYWRIGN*
Ga0066606_1024078233300004280MarineCKICDITHKNTSKYDLWIENQVCRICGQVLDFFSWNGNNLGDYWRIGK*
Ga0008649_1000223983300005838MarineMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH*
Ga0008649_1004056723300005838MarineMRCKICDITHKNTSKYDLWIENQVCRVCGQVLDFFSWNGNNLGDYWRIGK*
Ga0008649_1012305653300005838MarinePHKNTSKFDLWVENQVCRTCSQIIDLFSWNGNNLGEYWRFVN*
Ga0066369_1020953523300005969MarineMRCKICEITHKNTAKYDLWIENQMCKVCGQILDFFSWNGNNLGEYWRFGK*
Ga0082250_1004483933300006465SedimentMRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFEK*
Ga0082251_1022434933300006468SedimentMRCKICNIPHKNTSKYDLWLENQVCRVCAHILDLFSWNGNNLGEYWRFSN*
Ga0066376_1025678543300006900MarineMRCKICEITHKNTAKYDLWIENQMCRVCGQILDFFSWNGNNLGEYWRFGK*
Ga0115371_1062930023300008470SedimentEKKMRCKICNIPHKNTAKYDLWIENQVCRVCGQILDLFSWNGNNLGEYWRFRN*
Ga0115371_1093902933300008470SedimentMRCKICEIPHKNTSKFDLSIENQVCRTCGQILDLFSWNGNNLGGYWRFGN*
Ga0115656_113348053300008627MarineMKLTKSGGIKMRCKICEIPHKNTAKFDLWKENQVCRICGQLFDLFSWNGNNLGEYWRIGN
Ga0115656_118506633300008627MarineMRCKICEIPHKNTRKYDLWIENQVCRVCGHLMDFFSLNGNNLGHYWRIGN*
Ga0114950_1005681283300009030Deep SubsurfaceMRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLEEYWRFSN*
Ga0114950_1034215523300009030Deep SubsurfaceMRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWGSGK*
Ga0114950_1034377813300009030Deep SubsurfaceCKICNIPHKNTSQHELWIENQVCRICGHILDLFSWNGNNLGEYWRFGK*
Ga0114950_1038906243300009030Deep SubsurfaceMRCKICDISHKNTGKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN*
Ga0114950_1072001933300009030Deep SubsurfaceMRCKICNIPHKNTSKYDLWLENQVCRVCAHILDLFSWNGNNLGEYWRFGK*
Ga0114950_1127804023300009030Deep SubsurfaceMRCKICNIPHKNTSKHEFWLEYQVCRICGQILDLFSWNGNNLGEYWRFGK*
Ga0114950_1133572613300009030Deep SubsurfaceMRCKICEIPHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRFGK*
Ga0114950_1137766833300009030Deep SubsurfaceMRCKICNTPHKITAKYDLWLENQVCRVFGQILDLFSWNGNNLG
Ga0114948_1113486423300009102Deep SubsurfaceMRCKICDIPHKNTGKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN*
Ga0117917_104458323300009106MarineMRCKICEIPHKNTAKYDLWIENQVCRICGQLMDFFSLNGNNLGEYWRFGN*
Ga0114949_1080042723300009139Deep SubsurfaceMRCKICNIPHKNTGKYDLWIENQVCRVCGQILDLFSWNGNNLEEYWRFSN*
Ga0114949_1081496133300009139Deep SubsurfaceLGYEKMRCKICNTPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN*
Ga0114949_1104673613300009139Deep SubsurfaceMRCKICNIPHKNTAKYDLWIENQVCRVCAQILDLFSWNGNNLGEYWRF
Ga0114949_1136845023300009139Deep SubsurfaceMRCKICNIPHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRFGK*
Ga0114932_1004119863300009481Deep SubsurfaceMRCKICNISHKNTGKYDLWLDNQICRVCGQIFDFFSWNGNNLENYWRCEK*
Ga0114932_1053813423300009481Deep SubsurfaceMRCKICDISHKNTGKYDLWIDNQICRVCGQVLDFFSWNGNNLESYWRYEN*
Ga0114933_1002144083300009703Deep SubsurfaceMSMRCKICDISHKNTGKYDLWLENQVCRFCGQIIDLFSWNGN
Ga0114933_1037409233300009703Deep SubsurfaceMRCKICNISHKNTGKYDLWLDNQICRVCGQIFDFFSWNGNNLENYWRNEN*
Ga0114933_1088163123300009703Deep SubsurfaceMRCKICEITHKNTSKYDLWLENQMCRGCCQLFDIFSWNGNN
Ga0123372_10327923300009725MarineMRCKICQITHKNTGKYDLWTEYQVCRICGQILDLFTWNGNNLGEYWKKEAIA*
Ga0123363_103631333300009747MarineMRCKICQITHKNTGKYDLWTEHQVCRVCGQMLDLFSWNGNNLGEYWKKEVIAQ*
Ga0123370_106926433300009748MarineMRCKICQITHKNTGKYDLWTEHQVCRICGQILDLFTWNGNNLGE
Ga0123370_111576313300009748MarineRVGQNFGGNKMRCKICQITHKNTGKYDLWTEYQVCRICGQILDLFTWNGNNLGEYWKKEAIA*
Ga0123360_102011033300009753MarineMRCKICQITHKNTGKYDLWTEHQVCRICGQILDLFTWNGNNLGEYWKKEAIA*
Ga0123360_114384013300009753MarineMRCKICQITHKNTGKYALWTEHQVCRVCGQMLDLFSWNGNNLGEY
Ga0123382_101190023300010135MarineMRCKICQITHKNTGKYDLWTEHQVCRVCGQMLDFFSWNGNNLGEYWKKQVIAQ*
Ga0114934_1031794013300011013Deep SubsurfaceEKMRCKICDISHKNTGKYDLWIDNQICRVCGQVLDFFSWNGNNLESYWRYEN*
Ga0114947_1084165623300011112Deep SubsurfaceMRCKICNIPHKNTAKYDLWIENQVCRVCGQILDLFSWNGNNLGEYWRFSN*
Ga0212167_128348933300020230SedimentMRCKICNITHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRFGK
Ga0212168_129256563300020231SedimentMRCKICNIPHKNTAKYDLWIENQVCRVCAQILDLFSWNGNNLGEYWRFSN
Ga0212227_123806233300020234SedimentMRCKICEIPHKNTGKYDLWTENQVCRICGQILDLFSWNGNNLREYWRFGK
Ga0212227_135140953300020234SedimentMRCKICNIPHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRLSN
Ga0212227_137570533300020234SedimentMRCKICQISHKNTAKYDLWLENQVCRVCGQIMDLFSWNGNNLSEYWRFSN
Ga0212227_142695543300020234SedimentMRCKICDISHKNTGKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN
Ga0212228_111289133300020235SedimentMRCKICNIPHKNTGKYDLWVENQVCRVCGQILDLFSWNGNNLGEYWRFGK
Ga0212228_119280423300020235SedimentMRCKICNIPHKNTSKHEFWLEYQVCRICGQILDLFSWNGNNLGEYWRFGK
Ga0212228_131719013300020235SedimentMRCKICDIPHKNTGRHELWIEQRICRICAQILDLFSWNGNYLQEYWRTLN
Ga0212228_140984133300020235SedimentMRCKICEIPHKNTAKYDLWLENQVCRVCAQILDLFSWNGNNLGEYWRFGK
Ga0212228_140984153300020235SedimentCKICNIPHKNTSQHELWIENQVCRICGHILDLFSWNGNNLGEYWRFGK
Ga0212228_145060733300020235SedimentMRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWGSGK
(restricted) Ga0233428_100730583300022888SeawaterMRCKICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGEYWRMEN
(restricted) Ga0233428_101945553300022888SeawaterMRCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK
(restricted) Ga0233428_115428933300022888SeawaterMRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIKN
(restricted) Ga0233429_109418923300022902SeawaterVRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIEN
(restricted) Ga0233429_110198113300022902SeawaterQNLGNEKLRCKICQITHKNTAKYDLWLEHQVCRDCGNLFDLFSWNGNNLGAYWRIGN
(restricted) Ga0233427_1002540163300022933SeawaterMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH
Ga0209997_1032734413300024058Deep SubsurfaceMDKVTTSLENKAGGTKMRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNL
Ga0209987_1003952873300024060Deep SubsurfaceMRCKICNIPHKNTAKYDLWLENQVCRVCGQILDLFSWNGNNLEEYWRFSN
(restricted) Ga0233446_118756613300024256SeawaterKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH
(restricted) Ga0233442_115429513300024257SeawaterMRCKICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGE
(restricted) Ga0233441_123900713300024260SeawaterMRCKICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGEYWRME
(restricted) Ga0233448_112521013300024299SeawaterMRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEY
(restricted) Ga0233449_101851583300024302SeawaterFKNSTRKREDEIMRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIKN
(restricted) Ga0233434_126556723300024327SeawaterMRCKICEIPHKNTAKYDLWIQNQVCRVCGHLLDFFTLNGNNLGEYWRFVN
(restricted) Ga0233434_133377623300024327SeawaterMRCKICEIPHKNTTKYDLWLEHKVCRVCGSLFDLFSWNGNNLGEYWRIEN
Ga0209992_1000107233300024344Deep SubsurfaceMRCKICDISHKNTGKYDLWIDNQICRVCGQVLDFFSWNGNNLESYWRYEN
Ga0209992_1001527163300024344Deep SubsurfaceMRCKICNISHKNTGKYDLWLDNQICRVCGQIFDFFSWNGNNLENYWRCEK
Ga0209992_1001892363300024344Deep SubsurfaceMSMRCKICDISHKNTGKYDLWLENQVCRFCGQIIDLFSWNGNNLEAYWRYDIDVSKM
Ga0209992_1002381353300024344Deep SubsurfaceMRCKICNISHKNTGKYDLWLDNQICRVCGQIFDFFSWNGNNLENYWRNEN
Ga0209988_1014712813300024431Deep SubsurfaceTGKYDLWLENQVCRVCGQILDLFSWNGNNLGEYWRFSN
Ga0209556_111243023300025547MarineMRCKICDITHKNTSKYDLWIENQVCRVCGQVLDFFSWNGNNLGDYWRIGK
Ga0209045_116018913300025660MarineICEIPHKNTAKYDLWLEHKICRVCGSIFDLFSWNGNNLGEYWRMEN
Ga0209043_113551333300025667MarineRKDLGEKKMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH
Ga0209663_109080353300025672MarineMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWR
Ga0209263_1015341113300025681MarineMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRF
Ga0209140_114707333300025688MarineMRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLGEYWRFKH
Ga0208879_105109443300026253MarineMRCKICEITHKNTAKYDLWIENQMCKVCGQILDFFSWNGNNLGEYWRFGK
Ga0257118_109056213300028173MarineTHKNTAKYDLWLEHQVCRDCGNLFDLFSWNGNNLGAYWRIGN
Ga0257123_108213323300028174MarineMRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLEEYWRIEN
Ga0257117_106215913300028175MarineMRCKICEIPHKNTAKYDLWLEHKVCRVCGSLFDLFSWNGNNLGEYWRNKI
Ga0257121_100984393300028198MarineMRCKICEITHKNTSKYDLWLENQMCRVCCQLLDIFSWNGNNLGEYWRFVN
Ga0257121_103666663300028198MarineFGGGKMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH


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