Basic Information | |
---|---|
Family ID | F105188 |
Family Type | Metagenome |
Number of Sequences | 100 |
Average Sequence Length | 49 residues |
Representative Sequence | MRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD |
Number of Associated Samples | 89 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Archaea |
% of genes with valid RBS motifs | 9.00 % |
% of genes near scaffold ends (potentially truncated) | 37.00 % |
% of genes from short scaffolds (< 2000 bps) | 84.00 % |
Associated GOLD sequencing projects | 82 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Archaea (45.000 % of family members) |
NCBI Taxonomy ID | 2157 |
Taxonomy | All Organisms → cellular organisms → Archaea |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (25.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (48.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (51.000 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 82.35% β-sheet: 0.00% Coil/Unstructured: 17.65% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
⦗Top⦘ |
Visualization |
---|
Sediment Freshwater Freshwater Freshwater Lake Freshwater Lentic Freshwater Freshwater, Plankton Freshwater Lake Freshwater Lake Lake Water Freshwater Freshwater, Surface Ice Freshwater And Marine Aquatic Freshwater Surface Ice Estuarine Marine Estuarine Estuarine Estuarine Water |
Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
---|---|
|
|
Zoom: | Powered by OpenStreetMap |
⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
none_0174302 | 2236876003 | Marine Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD |
FwDRAFT_100231154 | 3300000882 | Freshwater And Marine | MRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILRNK |
B570J40625_1002993363 | 3300002835 | Freshwater | MKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC* |
B570J40625_1006236972 | 3300002835 | Freshwater | MKLFILVIISAALGLLTSILLYELFNIDFPPLFIGLTINAIGYYIFRKELE* |
JGI25908J49247_100188612 | 3300003277 | Freshwater Lake | MRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0069718_115502692 | 3300004481 | Sediment | MKLFSLIFISAALGLTISILLFKLWKINIQPLFIGLAINAIGYYIFRKQLDYER* |
Ga0068872_103242954 | 3300005528 | Freshwater Lake | MKLFSLIFISAALGLTTSILLYKFYNLDISPLFTGLTFNAIGYYFMEDEP* |
Ga0049081_100359382 | 3300005581 | Freshwater Lentic | MRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0049081_103391481 | 3300005581 | Freshwater Lentic | MKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD* |
Ga0049080_100391342 | 3300005582 | Freshwater Lentic | MRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0049085_102525822 | 3300005583 | Freshwater Lentic | MRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0049082_100397523 | 3300005584 | Freshwater Lentic | MRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0078117_10332102 | 3300005758 | Lake Water | MRLFSLIFISAAMGLATSILLYKIYKIDISPFFTGLFFNAIGYYLLRKKLD* |
Ga0070743_101153864 | 3300005941 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0070744_100077697 | 3300006484 | Estuarine | MKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRN* |
Ga0070744_100783282 | 3300006484 | Estuarine | MRLFSLVFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0102976_10785306 | 3300007169 | Freshwater Lake | MRLFSLIFISAAMGLATSILLYKIYKIDISPFFTGLFFNAIGY |
Ga0102978_10771623 | 3300007177 | Freshwater Lake | MKLFLLVFISAALGLTISILLYRYLLVNVSPLITGLSINAIGYYFLKKKLD* |
Ga0102874_10067827 | 3300007546 | Estuarine | MKLFILIFVSAALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD* |
Ga0102875_10869321 | 3300007547 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD* |
Ga0102879_12348882 | 3300007549 | Estuarine | LFSLVFVSAALCLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0102881_10630851 | 3300007551 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAI |
Ga0102918_10187806 | 3300007593 | Estuarine | MRLFSLVFVSAVLGLAISIFLYKVYNINIPPLFTGL |
Ga0102897_11862941 | 3300007617 | Estuarine | TRMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0102878_11155974 | 3300007624 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNK |
Ga0102902_10569101 | 3300007644 | Estuarine | MRLFSLVFISAALGLAISIFLYKGYNINIPPLFTGLAINAIGYYILRNKLD* |
Ga0102862_10181135 | 3300007670 | Estuarine | MRLFSLVFVSAAIGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0102922_13034912 | 3300008021 | Estuarine | LGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0114346_12072272 | 3300008113 | Freshwater, Plankton | MKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLVINIIGYYIFRKQLDHEC* |
Ga0114355_100175517 | 3300008120 | Freshwater, Plankton | MKLFSLIFISAALGLITSILLYEQFKTNFPPLFIGLAINAIGYYIFRKSINEDCDQ* |
Ga0114364_10386822 | 3300008267 | Freshwater, Plankton | MKLFSLIFISAALGLTVSILLFKLWKIDISPFFTGLFFNAIGYQLFKTKLDL* |
Ga0102891_10246084 | 3300008950 | Estuarine | AVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0102891_10701034 | 3300008950 | Estuarine | MRLFSLIFVSAVLGLAISIFLYKVYNINIPPLFTGLTINAIGYYIL |
Ga0102887_11547671 | 3300008961 | Estuarine | MRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLN* |
Ga0102831_10093101 | 3300008996 | Estuarine | IFVSAALGLTTSILMYKMFNIDFPPLFIGLSINAIGYYIFRKKINEDRD* |
Ga0102911_11598511 | 3300009049 | Estuarine | GLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0102909_10838043 | 3300009050 | Estuarine | MRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0102854_12067561 | 3300009058 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYTLRNKLD* |
Ga0114973_106855321 | 3300009068 | Freshwater Lake | LFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0102814_101486962 | 3300009079 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0102812_100632916 | 3300009086 | Estuarine | MRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLT |
Ga0114980_103847081 | 3300009152 | Freshwater Lake | MRLFSLVFVSAVLGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD* |
Ga0114968_107532231 | 3300009155 | Freshwater Lake | MRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLE* |
Ga0114977_100194085 | 3300009158 | Freshwater Lake | MRLFSLIFVSAVLGLAISIFLYKIYNINIPPLFTGLTINAIGYYILKNELD* |
Ga0114978_103633001 | 3300009159 | Freshwater Lake | MRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD* |
Ga0114969_103638841 | 3300009181 | Freshwater Lake | RLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0114967_105192972 | 3300010160 | Freshwater Lake | MRLFSLIFVSAVLGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0139556_10056122 | 3300011011 | Freshwater | MRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD* |
Ga0153805_10152204 | 3300012013 | Surface Ice | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILRNKLD* |
Ga0153801_10981762 | 3300012017 | Freshwater | MRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD* |
Ga0157498_10543922 | 3300012666 | Freshwater, Surface Ice | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLD* |
Ga0164294_106932463 | 3300013006 | Freshwater | MRLFTLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0164295_101176275 | 3300013014 | Freshwater | MRLFTLVFVSAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD* |
Ga0170791_123578791 | 3300013295 | Freshwater | SAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLD* |
Ga0181343_11882261 | 3300017766 | Freshwater Lake | IFISAALGLTISILLFKLWKIDIQPLFIGLAINCIGYYIFRKQLDHEC |
Ga0181358_10552952 | 3300017774 | Freshwater Lake | MRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD |
Ga0181357_11503902 | 3300017777 | Freshwater Lake | LGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD |
Ga0181357_12432241 | 3300017777 | Freshwater Lake | MRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYIL |
Ga0181348_10913101 | 3300017784 | Freshwater Lake | AALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD |
Ga0181348_13044082 | 3300017784 | Freshwater Lake | MRLFSLIFVSAVLGSAISMFLYKVYNINIPPLFTGLTINAIGYY |
Ga0181359_10660092 | 3300019784 | Freshwater Lake | MRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD |
Ga0181359_12463571 | 3300019784 | Freshwater Lake | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILRNKLD |
Ga0211736_104807793 | 3300020151 | Freshwater | ISAALGLTISILLFKLWNINIQPLFIGLVINAIGYYILRNKLD |
Ga0211733_105227335 | 3300020160 | Freshwater | MKLFSLIFISAALGLTISILLFKLWNINIQPLFFGLIINAIGYYILKNKLD |
Ga0211726_103614731 | 3300020161 | Freshwater | MKLFSLIFISAVLGLMISILLFKLWNINIQPLFIGLVINAIGYYILRNK |
Ga0211729_107700403 | 3300020172 | Freshwater | MKLFSLIFISAVLGLMISILLFKLWNINIQPLFFGLVINAIGYYILRNK |
Ga0208091_10187911 | 3300020506 | Freshwater | RVLNMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC |
Ga0207939_10268802 | 3300020536 | Freshwater | MKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC |
Ga0222715_1005273610 | 3300021960 | Estuarine Water | MKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQ |
Ga0222714_102207894 | 3300021961 | Estuarine Water | MKLFSLIFISAALGLTVSILLFKLWKIDISPFFTGLSINAIGYYILRKKLD |
Ga0222714_103913382 | 3300021961 | Estuarine Water | MKLFSLIFISAALGLTISILLFKLWKINIQPLFIGLVINIIGYYIFRKQLDYER |
Ga0222713_102972491 | 3300021962 | Estuarine Water | MRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD |
Ga0222712_106351301 | 3300021963 | Estuarine Water | MRLFSLVFVSAALGLAISIFFYKVYNINIPPLFTGLAINAIGYYILRNKLD |
Ga0181351_12412682 | 3300022407 | Freshwater Lake | MRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD |
Ga0244777_101499452 | 3300024343 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD |
Ga0244775_112245043 | 3300024346 | Estuarine | MKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD |
Ga0244775_114768882 | 3300024346 | Estuarine | MRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD |
Ga0244776_100259454 | 3300024348 | Estuarine | MKLFILIFVSAALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD |
Ga0208306_10781332 | 3300027214 | Estuarine | MRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD |
Ga0208929_10585614 | 3300027227 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKN |
Ga0208441_10152261 | 3300027294 | Estuarine | MRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINA |
Ga0208974_11253212 | 3300027608 | Freshwater Lentic | MRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD |
Ga0208975_10098581 | 3300027659 | Freshwater Lentic | MKLFILIFVSAALGLTTSILMYKMFNIDFPPLFIGLSINAIGYYIFRKKINEDRD |
Ga0208975_10731161 | 3300027659 | Freshwater Lentic | MKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINTIGYYIF |
Ga0209297_10156696 | 3300027733 | Freshwater Lake | MRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLE |
Ga0209087_12986342 | 3300027734 | Freshwater Lake | YRTRMRLFSLIFVSAVLGLAISIFLYKIYNINIPPLFTGLTINAIGYYILKNELD |
Ga0208305_101672452 | 3300027753 | Estuarine | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD |
Ga0209768_100916285 | 3300027772 | Freshwater Lake | MRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD |
Ga0209246_100846662 | 3300027785 | Freshwater Lake | AISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD |
Ga0209191_11232083 | 3300027969 | Freshwater Lake | MRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLE |
(restricted) Ga0247834_10088373 | 3300027977 | Freshwater | MKLFSLIFISAALGLTISILLFKLWKIDISPFFTGLAINAIGYYIFRKQLDHEC |
Ga0119944_10067384 | 3300029930 | Aquatic | MKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQLFKTKLNK |
Ga0315900_104086073 | 3300031787 | Freshwater | MKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLVINIIGYYIFRKEL |
Ga0315909_101869733 | 3300031857 | Freshwater | MKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQLFKTKLNE |
Ga0315909_102328971 | 3300031857 | Freshwater | MKLFSLIFISAALGLTTSILLYKFYNLDISPLFTGLTFNAIGYYFLKK |
Ga0315902_106296864 | 3300032093 | Freshwater | MKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLAINAIGYYIFRKS |
Ga0334980_0186718_535_690 | 3300033816 | Freshwater | MKLFILVIISAALGLLTSILLYELFNIDFPPLFIGLTINAIGYYIFRKELE |
Ga0334981_0353721_295_450 | 3300033980 | Freshwater | MRLFSLVFISAALGLAISIFLYKVYSINIPPLFTGLAINAIGYYILRNKLD |
Ga0334979_0257289_881_1006 | 3300033996 | Freshwater | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIG |
Ga0335013_0259442_1_132 | 3300034284 | Freshwater | MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYY |
⦗Top⦘ |