NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105188

Metagenome Family F105188

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105188
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 49 residues
Representative Sequence MRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Archaea
% of genes with valid RBS motifs 9.00 %
% of genes near scaffold ends (potentially truncated) 37.00 %
% of genes from short scaffolds (< 2000 bps) 84.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Archaea (45.000 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(48.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(51.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60
1none_0174302
2FwDRAFT_100231154
3B570J40625_1002993363
4B570J40625_1006236972
5JGI25908J49247_100188612
6Ga0069718_115502692
7Ga0068872_103242954
8Ga0049081_100359382
9Ga0049081_103391481
10Ga0049080_100391342
11Ga0049085_102525822
12Ga0049082_100397523
13Ga0078117_10332102
14Ga0070743_101153864
15Ga0070744_100077697
16Ga0070744_100783282
17Ga0102976_10785306
18Ga0102978_10771623
19Ga0102874_10067827
20Ga0102875_10869321
21Ga0102879_12348882
22Ga0102881_10630851
23Ga0102918_10187806
24Ga0102897_11862941
25Ga0102878_11155974
26Ga0102902_10569101
27Ga0102862_10181135
28Ga0102922_13034912
29Ga0114346_12072272
30Ga0114355_100175517
31Ga0114364_10386822
32Ga0102891_10246084
33Ga0102891_10701034
34Ga0102887_11547671
35Ga0102831_10093101
36Ga0102911_11598511
37Ga0102909_10838043
38Ga0102854_12067561
39Ga0114973_106855321
40Ga0102814_101486962
41Ga0102812_100632916
42Ga0114980_103847081
43Ga0114968_107532231
44Ga0114977_100194085
45Ga0114978_103633001
46Ga0114969_103638841
47Ga0114967_105192972
48Ga0139556_10056122
49Ga0153805_10152204
50Ga0153801_10981762
51Ga0157498_10543922
52Ga0164294_106932463
53Ga0164295_101176275
54Ga0170791_123578791
55Ga0181343_11882261
56Ga0181358_10552952
57Ga0181357_11503902
58Ga0181357_12432241
59Ga0181348_10913101
60Ga0181348_13044082
61Ga0181359_10660092
62Ga0181359_12463571
63Ga0211736_104807793
64Ga0211733_105227335
65Ga0211726_103614731
66Ga0211729_107700403
67Ga0208091_10187911
68Ga0207939_10268802
69Ga0222715_1005273610
70Ga0222714_102207894
71Ga0222714_103913382
72Ga0222713_102972491
73Ga0222712_106351301
74Ga0181351_12412682
75Ga0244777_101499452
76Ga0244775_112245043
77Ga0244775_114768882
78Ga0244776_100259454
79Ga0208306_10781332
80Ga0208929_10585614
81Ga0208441_10152261
82Ga0208974_11253212
83Ga0208975_10098581
84Ga0208975_10731161
85Ga0209297_10156696
86Ga0209087_12986342
87Ga0208305_101672452
88Ga0209768_100916285
89Ga0209246_100846662
90Ga0209191_11232083
91Ga0247834_10088373
92Ga0119944_10067384
93Ga0315900_104086073
94Ga0315909_101869733
95Ga0315909_102328971
96Ga0315902_106296864
97Ga0334980_0186718_535_690
98Ga0334981_0353721_295_450
99Ga0334979_0257289_881_1006
100Ga0335013_0259442_1_132
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 82.35%    β-sheet: 0.00%    Coil/Unstructured: 17.65%
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5101520253035404550MRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLDExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
62.0%38.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Sediment
Freshwater
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater Lake
Lake Water
Freshwater
Freshwater, Surface Ice
Freshwater And Marine
Aquatic
Freshwater
Surface Ice
Estuarine
Marine Estuarine
Estuarine
Estuarine Water
3.0%13.0%8.0%7.0%3.0%10.0%7.0%4.0%25.0%5.0%5.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
none_01743022236876003Marine EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
FwDRAFT_1002311543300000882Freshwater And MarineMRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILRNK
B570J40625_10029933633300002835FreshwaterMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC*
B570J40625_10062369723300002835FreshwaterMKLFILVIISAALGLLTSILLYELFNIDFPPLFIGLTINAIGYYIFRKELE*
JGI25908J49247_1001886123300003277Freshwater LakeMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0069718_1155026923300004481SedimentMKLFSLIFISAALGLTISILLFKLWKINIQPLFIGLAINAIGYYIFRKQLDYER*
Ga0068872_1032429543300005528Freshwater LakeMKLFSLIFISAALGLTTSILLYKFYNLDISPLFTGLTFNAIGYYFMEDEP*
Ga0049081_1003593823300005581Freshwater LenticMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0049081_1033914813300005581Freshwater LenticMKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD*
Ga0049080_1003913423300005582Freshwater LenticMRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0049085_1025258223300005583Freshwater LenticMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0049082_1003975233300005584Freshwater LenticMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0078117_103321023300005758Lake WaterMRLFSLIFISAAMGLATSILLYKIYKIDISPFFTGLFFNAIGYYLLRKKLD*
Ga0070743_1011538643300005941EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0070744_1000776973300006484EstuarineMKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRN*
Ga0070744_1007832823300006484EstuarineMRLFSLVFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0102976_107853063300007169Freshwater LakeMRLFSLIFISAAMGLATSILLYKIYKIDISPFFTGLFFNAIGY
Ga0102978_107716233300007177Freshwater LakeMKLFLLVFISAALGLTISILLYRYLLVNVSPLITGLSINAIGYYFLKKKLD*
Ga0102874_100678273300007546EstuarineMKLFILIFVSAALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD*
Ga0102875_108693213300007547EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0102879_123488823300007549EstuarineLFSLVFVSAALCLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102881_106308513300007551EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAI
Ga0102918_101878063300007593EstuarineMRLFSLVFVSAVLGLAISIFLYKVYNINIPPLFTGL
Ga0102897_118629413300007617EstuarineTRMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102878_111559743300007624EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNK
Ga0102902_105691013300007644EstuarineMRLFSLVFISAALGLAISIFLYKGYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0102862_101811353300007670EstuarineMRLFSLVFVSAAIGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102922_130349123300008021EstuarineLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0114346_120722723300008113Freshwater, PlanktonMKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLVINIIGYYIFRKQLDHEC*
Ga0114355_1001755173300008120Freshwater, PlanktonMKLFSLIFISAALGLITSILLYEQFKTNFPPLFIGLAINAIGYYIFRKSINEDCDQ*
Ga0114364_103868223300008267Freshwater, PlanktonMKLFSLIFISAALGLTVSILLFKLWKIDISPFFTGLFFNAIGYQLFKTKLDL*
Ga0102891_102460843300008950EstuarineAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102891_107010343300008950EstuarineMRLFSLIFVSAVLGLAISIFLYKVYNINIPPLFTGLTINAIGYYIL
Ga0102887_115476713300008961EstuarineMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLN*
Ga0102831_100931013300008996EstuarineIFVSAALGLTTSILMYKMFNIDFPPLFIGLSINAIGYYIFRKKINEDRD*
Ga0102911_115985113300009049EstuarineGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102909_108380433300009050EstuarineMRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0102854_120675613300009058EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYTLRNKLD*
Ga0114973_1068553213300009068Freshwater LakeLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0102814_1014869623300009079EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0102812_1006329163300009086EstuarineMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLT
Ga0114980_1038470813300009152Freshwater LakeMRLFSLVFVSAVLGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0114968_1075322313300009155Freshwater LakeMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLE*
Ga0114977_1001940853300009158Freshwater LakeMRLFSLIFVSAVLGLAISIFLYKIYNINIPPLFTGLTINAIGYYILKNELD*
Ga0114978_1036330013300009159Freshwater LakeMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0114969_1036388413300009181Freshwater LakeRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0114967_1051929723300010160Freshwater LakeMRLFSLIFVSAVLGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0139556_100561223300011011FreshwaterMRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0153805_101522043300012013Surface IceMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILRNKLD*
Ga0153801_109817623300012017FreshwaterMRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0157498_105439223300012666Freshwater, Surface IceMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLD*
Ga0164294_1069324633300013006FreshwaterMRLFTLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0164295_1011762753300013014FreshwaterMRLFTLVFVSAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0170791_1235787913300013295FreshwaterSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLD*
Ga0181343_118822613300017766Freshwater LakeIFISAALGLTISILLFKLWKIDIQPLFIGLAINCIGYYIFRKQLDHEC
Ga0181358_105529523300017774Freshwater LakeMRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
Ga0181357_115039023300017777Freshwater LakeLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0181357_124322413300017777Freshwater LakeMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYIL
Ga0181348_109131013300017784Freshwater LakeAALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD
Ga0181348_130440823300017784Freshwater LakeMRLFSLIFVSAVLGSAISMFLYKVYNINIPPLFTGLTINAIGYY
Ga0181359_106600923300019784Freshwater LakeMRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
Ga0181359_124635713300019784Freshwater LakeMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILRNKLD
Ga0211736_1048077933300020151FreshwaterISAALGLTISILLFKLWNINIQPLFIGLVINAIGYYILRNKLD
Ga0211733_1052273353300020160FreshwaterMKLFSLIFISAALGLTISILLFKLWNINIQPLFFGLIINAIGYYILKNKLD
Ga0211726_1036147313300020161FreshwaterMKLFSLIFISAVLGLMISILLFKLWNINIQPLFIGLVINAIGYYILRNK
Ga0211729_1077004033300020172FreshwaterMKLFSLIFISAVLGLMISILLFKLWNINIQPLFFGLVINAIGYYILRNK
Ga0208091_101879113300020506FreshwaterRVLNMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC
Ga0207939_102688023300020536FreshwaterMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC
Ga0222715_10052736103300021960Estuarine WaterMKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQ
Ga0222714_1022078943300021961Estuarine WaterMKLFSLIFISAALGLTVSILLFKLWKIDISPFFTGLSINAIGYYILRKKLD
Ga0222714_1039133823300021961Estuarine WaterMKLFSLIFISAALGLTISILLFKLWKINIQPLFIGLVINIIGYYIFRKQLDYER
Ga0222713_1029724913300021962Estuarine WaterMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD
Ga0222712_1063513013300021963Estuarine WaterMRLFSLVFVSAALGLAISIFFYKVYNINIPPLFTGLAINAIGYYILRNKLD
Ga0181351_124126823300022407Freshwater LakeMRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0244777_1014994523300024343EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD
Ga0244775_1122450433300024346EstuarineMKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD
Ga0244775_1147688823300024346EstuarineMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0244776_1002594543300024348EstuarineMKLFILIFVSAALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD
Ga0208306_107813323300027214EstuarineMRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
Ga0208929_105856143300027227EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKN
Ga0208441_101522613300027294EstuarineMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINA
Ga0208974_112532123300027608Freshwater LenticMRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0208975_100985813300027659Freshwater LenticMKLFILIFVSAALGLTTSILMYKMFNIDFPPLFIGLSINAIGYYIFRKKINEDRD
Ga0208975_107311613300027659Freshwater LenticMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINTIGYYIF
Ga0209297_101566963300027733Freshwater LakeMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLE
Ga0209087_129863423300027734Freshwater LakeYRTRMRLFSLIFVSAVLGLAISIFLYKIYNINIPPLFTGLTINAIGYYILKNELD
Ga0208305_1016724523300027753EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0209768_1009162853300027772Freshwater LakeMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0209246_1008466623300027785Freshwater LakeAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0209191_112320833300027969Freshwater LakeMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLE
(restricted) Ga0247834_100883733300027977FreshwaterMKLFSLIFISAALGLTISILLFKLWKIDISPFFTGLAINAIGYYIFRKQLDHEC
Ga0119944_100673843300029930AquaticMKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQLFKTKLNK
Ga0315900_1040860733300031787FreshwaterMKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLVINIIGYYIFRKEL
Ga0315909_1018697333300031857FreshwaterMKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQLFKTKLNE
Ga0315909_1023289713300031857FreshwaterMKLFSLIFISAALGLTTSILLYKFYNLDISPLFTGLTFNAIGYYFLKK
Ga0315902_1062968643300032093FreshwaterMKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLAINAIGYYIFRKS
Ga0334980_0186718_535_6903300033816FreshwaterMKLFILVIISAALGLLTSILLYELFNIDFPPLFIGLTINAIGYYIFRKELE
Ga0334981_0353721_295_4503300033980FreshwaterMRLFSLVFISAALGLAISIFLYKVYSINIPPLFTGLAINAIGYYILRNKLD
Ga0334979_0257289_881_10063300033996FreshwaterMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIG
Ga0335013_0259442_1_1323300034284FreshwaterMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYY


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