Metagenome / Metatranscriptome Family F105116

Basic Information
Family ID	F105116
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	63 residues
Representative Sequence	MTCPKCGTEMNHQADKLVHPVTKEEAASMTPALDGVIESVFACPGCGWIDSRRVAGSHSVRS
Number of Associated Samples	85
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.00 %
% of genes near scaffold ends (potentially truncated)	16.00 %
% of genes from short scaffolds (< 2000 bps)	83.00 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (98.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (12.000 % of family members)
Environment Ontology (ENVO)	Unclassified (26.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (28.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 12208381129 2JGI10216J12902_1073476522 3C687J26616_100344193 4C687J35164_100826752 5Ga0055500_100557331 6Ga0062594_1006148892 7Ga0066810_100523782 8Ga0066388_1028100112 9Ga0066682_101418441 10Ga0066706_115397972 11Ga0066903_1001990683 12Ga0066903_1008719112 13Ga0066903_1013783862 14Ga0066903_1033501771 15Ga0074473_105604552 16Ga0074472_106736352 17Ga0081455_100378544 18Ga0066652_1004676531 19Ga0074049_121610612 20Ga0075425_1001811282 21Ga0075435_1006367131 22Ga0066710_1005690494 23Ga0099830_101783353 24Ga0066709_1002077733 25Ga0066709_1016055941 26Ga0114921_106247962 27Ga0114944_14698772 28Ga0126383_100595262 29Ga0126383_106588531 30Ga0137433_11375821 31Ga0137372_100542263 32Ga0137366_100943271 33Ga0137366_102532012 34Ga0137371_101542994 35Ga0137373_103069253 36Ga0126369_117279062 37Ga0190266_103683932 38Ga0187776_100397303 39Ga0184634_104753712 40Ga0187788_104407291 41Ga0184626_103976151 42Ga0184637_102041772 43Ga0187773_101636142 44Ga0184612_101004272 45Ga0190272_127233382 46Ga0066667_101243102 47Ga0190268_117326882 48Ga0190270_105571332 49Ga0190271_100389894 50Ga0190271_124384262 51Ga0193738_10645173 52Ga0210379_104953371 53Ga0210334_106769662 54Ga0224500_100164915 55Ga0224500_101502763 56Ga0224510_102756423 57Ga0212128_105692952 58Ga0209618_10361262 59Ga0209109_102862282 60Ga0209109_103792532 61Ga0209431_103239871 62Ga0209520_102894283 63Ga0209640_100380175 64Ga0209640_101510503 65Ga0209341_101825053 66Ga0209341_103319542 67Ga0209341_106956751 68Ga0209342_101166883 69Ga0209342_109630651 70Ga0209265_10777671 71Ga0209878_10065022 72Ga0209846_10224312 73Ga0209842_10063431 74Ga0233416_1000021818 75Ga0233416_100003755 76Ga0209701_101053672 77Ga0233418_100249253 78Ga0247828_102261063 79Ga0307503_107754912 80Ga0307281_102625531 81Ga0247825_103739032 82Ga0299906_112380412 83Ga0318516_100919104 84Ga0318534_104480752 85Ga0247727_100130948 86Ga0315291_104308071 87Ga0318497_104209881 88Ga0315290_105640062 89Ga0315297_100969623 90Ga0318551_103108413 91Ga0315278_104568642 92Ga0318575_105748872 93Ga0315295_109311332 94Ga0315276_108162212 95Ga0315287_104456514 96Ga0315273_121679902 97Ga0315273_124751472 98Ga0335084_112604072 99Ga0214471_106727462 100Ga0364943_0119468_379_567
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 12208381129 2JGI10216J12902_1073476522 3C687J26616_100344193 4Ga0055500_100557331 5Ga0062594_1006148892 6Ga0066810_100523782 7Ga0066388_1028100112 8Ga0066682_101418441 9Ga0066706_115397972 10Ga0066903_1008719112 11Ga0066903_1013783862 12Ga0066903_1033501771 13Ga0074473_105604552 14Ga0074472_106736352 15Ga0081455_100378544 16Ga0099830_101783353 17Ga0114921_106247962 18Ga0114944_14698772 19Ga0137433_11375821 20Ga0137372_100542263 21Ga0190266_103683932 22Ga0187776_100397303 23Ga0187788_104407291 24Ga0184637_102041772 25Ga0184612_101004272 26Ga0190272_127233382 27Ga0193738_10645173 28Ga0209109_102862282 29Ga0209109_103792532 30Ga0209431_103239871 31Ga0209341_101825053 32Ga0209341_103319542 33Ga0209878_10065022 34Ga0233416_1000021818 35Ga0233416_100003755 36Ga0307503_107754912 37Ga0247825_103739032 38Ga0318516_100919104 39Ga0318534_104480752 40Ga0315278_104568642 41Ga0315273_124751472 42Ga0335084_112604072 43Ga0214471_106727462
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 1Ga0209341_106956751 22208381129 3JGI10216J12902_1073476522 4C687J26616_100344193 5Ga0055500_100557331 6Ga0062594_1006148892 7Ga0066810_100523782 8Ga0066682_101418441 9Ga0066706_115397972 10Ga0066903_1001990683 11Ga0066903_1008719112 12Ga0066903_1013783862 13Ga0066903_1033501771 14Ga0081455_100378544 15Ga0075425_1001811282 16Ga0066709_1016055941 17Ga0114921_106247962 18Ga0114944_14698772 19Ga0126383_100595262 20Ga0137371_101542994 21Ga0190266_103683932 22Ga0184634_104753712 23Ga0187788_104407291 24Ga0184626_103976151 25Ga0184637_102041772 26Ga0187773_101636142 27Ga0190268_117326882 28Ga0190271_100389894 29Ga0190271_124384262 30Ga0193738_10645173 31Ga0210334_106769662 32Ga0224500_101502763 33Ga0209618_10361262 34Ga0209109_102862282 35Ga0209109_103792532 36Ga0209431_103239871 37Ga0209640_100380175 38Ga0209341_103319542 39Ga0209878_10065022 40Ga0233416_1000021818 41Ga0233416_100003755 42Ga0209701_101053672 43Ga0233418_100249253 44Ga0307503_107754912 45Ga0247825_103739032 46Ga0299906_112380412 47Ga0318534_104480752 48Ga0315290_105640062 49Ga0315278_104568642 50Ga0318575_105748872 51Ga0315273_121679902 52Ga0335084_112604072 53Ga0214471_106727462 54Ga0364943_0119468_379_567
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.56% β-sheet: 24.44% Coil/Unstructured: 70.00%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF03358	FMN_red	39.00
PF00664	ABC_membrane	15.00
PF00850	Hist_deacetyl	2.00
PF02885	Glycos_trans_3N	2.00
PF00230	MIP	2.00
PF00005	ABC_tran	2.00
PF09851	SHOCT	2.00
PF02322	Cyt_bd_oxida_II	2.00
PF03109	ABC1	1.00
PF07690	MFS_1	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.00
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	2.00
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	2.00
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	1.00
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	1.00
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	45.00 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.00 %
Unclassified	root	N/A	2.00 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	43.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	43.00 %
Unclassified	root	N/A	2.00 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	43.00 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	1.00 %
Unclassified	root	N/A	2.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300027799\|Ga0233416_10000218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17609	Open in IMG/M
(restricted) 3300027799\|Ga0233416_10000375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13693	Open in IMG/M
(restricted) 3300027995\|Ga0233418_10024925	All Organisms → cellular organisms → Bacteria	1540	Open in IMG/M
2199352032\|2206656097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300000956\|JGI10216J12902_107347652	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300002120\|C687J26616_10034419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1845	Open in IMG/M
3300002503\|C687J35164_10082675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	960	Open in IMG/M
3300004062\|Ga0055500_10055733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	803	Open in IMG/M
3300005093\|Ga0062594_100614889	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300005169\|Ga0066810_10052378	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M

Showing 1 to 10 of 100 entries

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.00%
Host-Associated	Host-Associated	3.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	28.00%
Plants	Host-Associated → Plants	3.00%
Terrestrial	Environmental → Terrestrial	69.00%

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	1.00%
Floodplain	Environmental → Terrestrial → Floodplain	1.00%
Freshwater	Environmental → Aquatic → Freshwater	13.00%
Marine	Environmental → Aquatic → Marine	6.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.00%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.00%
Sediment	Environmental → Aquatic → Sediment	7.00%
Soil	Environmental → Terrestrial → Soil	66.00%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.00%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.00%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.00%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.00%
Lake	Environmental → Aquatic → Freshwater → Lake	12.00%
Loam	Environmental → Terrestrial → Soil → Loam	15.00%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.00%
Sand	Environmental → Terrestrial → Soil → Sand	3.00%
Sediment	Environmental → Aquatic → Marine → Sediment	3.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.00%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.00%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.00%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.00%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.00%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.00%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	12.00%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.00%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.00%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	3.00%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.00%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	2.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.00%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.00%

Habitat	Taxonomy	Distribution
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.00%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.00%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.00%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.00%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.00%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	12.00%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	3.00%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.00%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.00%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.00%
Speleothem And Rock Wall Surfaces	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces	1.00%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.00%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	2.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.00%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.00%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352032	Cave microbial community (Speleothem A)	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental	Open in IMG/M
3300002503	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M

Showing 1 to 10 of 85 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
2208381129	2199352032	Speleothem And Rock Wall Surfaces	MTCPKCGTEMNHQAEKLVYPVTAAEAERMTAALDGVIENVFACPGCGWVDSWREPGVPAAPR
JGI10216J12902_1073476522	3300000956	Soil	MTCPKCGTDMNHQADKLVQPVTREEAASVESTLDGLLEHVFACPGCGWIDARREPGASGDS*
C687J26616_100344193	3300002120	Soil	VTRHVMTCLKCGAAMNHQADKLVHPVTKEEAARMTATLDGVIERIYACPNCGWIDSRRPTETSPSR*
C687J35164_100826752	3300002503	Soil	MTCLKCGAAMNHQADKLVHPVTKEEAARMTATLDGVIERIYACPNCGWIDSRRPTETSPSR*
Ga0055500_100557331	3300004062	Natural And Restored Wetlands	MTCPRCGAEMNHQADKLVHPVTHEEAASMTPALDGVIEIVFACPGCGWIDSRRDSKSMRKTEIR*
Ga0062594_1006148892	3300005093	Soil	LTPAGMTCPKCGTEMNHQADKLVHPTTRDEAASMTAALDGVIEEVFACPNCGRIESRRATAQ*
Ga0066810_100523782	3300005169	Soil	MNERSMSCPNCGAQMNHQADKLVHPTTAEEAARLTPELDGVIERVFACPECGRIESRRVT
Ga0066388_1028100112	3300005332	Tropical Forest Soil	MTCPKCGTPMNHQADKLVYPRTAAEAARMTVAFDGVIEEVFACPNCGWIESRQGAEEPESS*
Ga0066682_101418441	3300005450	Soil	AAGMVCPKCGTPMNHQADKLVYPLTRAEAASMTAAFDGVLEEVFACPNCGWIESRRTTPVSEQR*
Ga0066706_115397972	3300005598	Soil	MPAGMTCPKCGSAMNHQAAKLVYAVTEEEAATLTEAFDGVIEEVFACPACGRIESRRATATTS*
Ga0066903_1001990683	3300005764	Tropical Forest Soil	MSSSGTTRRRGDVTMTCPKCGTPMNHQADKLVYPRTAAEAARMTVAFDGVIEEVFACPNCGWIESRQGTEESESS*
Ga0066903_1008719112	3300005764	Tropical Forest Soil	MICPKCGTEMNHQADKLVHPVTKEEATHMTIALDGVIAEVFACPGCGWIESRRVPADAG*
Ga0066903_1013783862	3300005764	Tropical Forest Soil	VSCPKCGHEMNHQAAKLVPAVTAEDVAALTDAFDGLVEEIFACPGCGWIEARRADAATADGSRG*
Ga0066903_1033501771	3300005764	Tropical Forest Soil	MTCPKCGSPMNHEADKLVYPQSRAEESALSAAFDGVIEEIFACPSCGWIASRRAGAGAAEK*
Ga0074473_105604552	3300005830	Sediment (Intertidal)	VSEQTMSCPKCGEEMNHQASKLVYPLTEAEAARMTPALDGVIEDVFACPGCGWIRSQRAGDKNDD*
Ga0074472_106736352	3300005833	Sediment (Intertidal)	MNDAPPACPKCDTPMNHQADKLTHPVTAAEAAALTPVFDGVLERVFACPACGWIDSRRESPRGAE*
Ga0081455_100378544	3300005937	Tabebuia Heterophylla Rhizosphere	MTCPRCGFQMNHQADKLTYPVTREEAASMTAAIDGVIEEVFACPNCGWIESRRADPAGPT
Ga0066652_1004676531	3300006046	Soil	MVCPKCGTPMNHQADKLVYPLTRAEAASMTAAFDGVLEEVFACPNCGWIESRRTTPVSEQ
Ga0074049_121610612	3300006580	Soil	MSCPNCGAQMNHQADKLVHPTTAEEAARLTPELDGVIERVFACPECGRIESRRVT*
Ga0075425_1001811282	3300006854	Populus Rhizosphere	MTCPKCGSPMNHQADKLVHPRTRAEESALSTAFDGVIEEVFACPSCGWIASRRAAGEAAEK*
Ga0075435_1006367131	3300007076	Populus Rhizosphere	VNAAMTCPKCGSPMNHQADKLVHPRTRAEESALSTAFDGVIEEVFACPSCGWIASRRAAGEAAEK*
Ga0066710_1005690494	3300009012	Grasslands Soil	MPAGMTCPKCGSAMNHQAAKLVYAVTEEEAATLTEAFDGVIEEVFACPACGRIESRRVTAASS
Ga0099830_101783353	3300009088	Vadose Zone Soil	MKAQMTCPQCGAQMNHQADKLVYPRNRDEAARTTEALDGVIEHVFACPNCGRIESDPES*
Ga0066709_1002077733	3300009137	Grasslands Soil	MVCPKCGTPMNHQADKLVYPLTRAEAASMTAAFDGVLEEVFACPNCGWIESRRTTPVSEQR*
Ga0066709_1016055941	3300009137	Grasslands Soil	MPAGMTCPKCGSAMNHQAAKLVHAVTEEEAATLTEAFDGVIEEVFACPACGRIESPRVTPTSR*
Ga0114921_106247962	3300009150	Deep Subsurface	LTRVTVTCPKCGAEMNHQADKLVHAVTREEAASMTEALDGLIEQVFACPGCGRIESQRPSNRSGSL*
Ga0114944_14698772	3300009691	Thermal Springs	MTKTMTCPKCGGDMNHQADKLVHPVTKEEAASLTAAFDGVVAEVFACPNCGWIEARRTSPGGHP*
Ga0126383_100595262	3300010398	Tropical Forest Soil	VICPKCGTEMNHQADKLRHPVTREEAASMTAALDGVIEEVFACPNCGWIESRRAVVRPG*
Ga0126383_106588531	3300010398	Tropical Forest Soil	MSCPKCGHEMNHQAAKLVPAVTAEDVAALTDAFDGLVEEIFACPGCGWIEARRADAATADGSRG*
Ga0137433_11375821	3300011440	Soil	MTCPKCGTEMNHQADKLVDPVTHEEAVAMTGAFDGVLMIVFACPNCGWIDSRRDSG
Ga0137372_100542263	3300012350	Vadose Zone Soil	MTTTDMKCAKCGAHMNHQADKLVHPVTRKEAAAMTDALDGVIEEVFACPNCGWIDSRRAT
Ga0137366_100943271	3300012354	Vadose Zone Soil	MTTTDMKCAKCGAHMNHQADKLVHPVTRKEAAAMTDARDGVIEEVFACPNCGWIDSRRAT
Ga0137366_102532012	3300012354	Vadose Zone Soil	MTCPNCGAEMNHQADKLVHPVTKEEAAKMTAALDGVIEEVFACPSCGRIESRRAT*
Ga0137371_101542994	3300012356	Vadose Zone Soil	MTTTDMKCAKCGAHMNHQADKLVHPVSRKEAAAMTDALDGVIEEVFACPNCGWIDSRRAT
Ga0137373_103069253	3300012532	Vadose Zone Soil	LKMTTTDMKCAKCGAHMNHQADKLVHPVSRKEAAAMTDALDGVIEEVFACPNCGWIDSRRAT*
Ga0126369_117279062	3300012971	Tropical Forest Soil	DVTMTCPKCGTPMNHQADKLVYPRTAAEAARMTVAFDGVIEEVFACPNCGWIESRQGTEESESS*
Ga0190266_103683932	3300017965	Soil	VTRPELRCPKCGTEMNHQADKLVQPLTQDEVVTVGSTLDGLLERVFACPSCGWIDSRREPGAPATS
Ga0187776_100397303	3300017966	Tropical Peatland	MTCPKCGSQMNFEAAKLVYPVTDEEAAQMTDAFDGVIEDVFACPNCGWIESRRVPAPSTG
Ga0184634_104753712	3300018031	Groundwater Sediment	MTCPKCGTEMNHQAEKLVHPVTREEAASMTPALDGVVESVFACPGCGWIDSRRGGEPLRKTEIR
Ga0187788_104407291	3300018032	Tropical Peatland	VTEAPKCPKCGTVMNHQADKLTHPVSVDEAATLTPLFEGIIVSVFACPRCGWIESRRAVPPIRV
Ga0184626_103976151	3300018053	Groundwater Sediment	MTCPKCGTEMNHQADKLVDPVTHEEAAAMTGAFDGVLMIVFACPNCGWIDSRREAGSHSP
Ga0184637_102041772	3300018063	Groundwater Sediment	MTCPKCATQMNHQADKLVHPITQDEAATVGPMFDGVLERVFACPGCGWIDARREPGAAAA
Ga0187773_101636142	3300018064	Tropical Peatland	LTPPTMTCPKCGSQMNFEAAKLVYPVTDEEAAQMTDAFDGVIEDVFACPNCGWIESRRVPAPPTGR
Ga0184612_101004272	3300018078	Groundwater Sediment	MTCPKCGTEMNHQADKLVHPVTREEAEGMTPALDGVIVIVFACPGCGWIDSRREPQPQPQPS
Ga0190272_127233382	3300018429	Soil	LTRPALTCSKCGAEMNHQADKLVQPVTQEEATTVEPTLDGLLERVFACPSCGWIDSRREPATS
Ga0066667_101243102	3300018433	Grasslands Soil	MSAAGMVCPKCGTPMNHQADKLVYPLTRAEAASMTAAFDGVLEEVFACPNCGWIESRRTTPVSEQR
Ga0190268_117326882	3300018466	Soil	LTRPELMCPKCGAEMNHQADKLVQPVTQEEATTVGVTLDGLLERVFACPHCGWIDSRREAGAPAT
Ga0190270_105571332	3300018469	Soil	VTRPAMTCAKCGTEMNHQADKLVQPTTGEEAATVGPTLDGLLERVFACPGCGWIDSRRESGDA
Ga0190271_100389894	3300018481	Soil	VTRPAMTCAKCGTEMNHQADKLVQPTTGEEAATVGPTLDGLLERVFACPGCGWIDSRRESGDS
Ga0190271_124384262	3300018481	Soil	MRPTMTCLKCGAEMNHQADKLVQPVTQEEATTVGPTLDGLLERVFACPSCGWIDSRREPAIS
Ga0193738_10645173	3300020020	Soil	LTRPTMTCPRCGAQMNHQATKLVDPVTAEEAAAMTKAFDGVLVVVFACPGCGWIDSRRETDESPLSA
Ga0210379_104953371	3300021081	Groundwater Sediment	LSGPTMTCPKCGAEMNHQADKLVHPVTKEEAAGMTPALDGVIETVFACPGCGWIDSRRGAGSHSQPS
Ga0210334_106769662	3300021859	Estuarine	MSCPKCGEGMNHQASKLVYPLTEAEAARMTPALDGVIEDVFACPGCGWIRSQRAGDKNDD
Ga0224500_100164915	3300022213	Sediment	VSEQTMSCPKCGEEMNHQASKLVYPLTEAEAARMTPALDGVIEDVFACPGCGWIRSQRAGDKNDD
Ga0224500_101502763	3300022213	Sediment	MSDAPPACPKCDTPMNHQADKLTHPVNAAEAAALTPVFDGVLERVFACPACGWIDSRRASPRDAE
Ga0224510_102756423	3300022309	Sediment	MSDAPPACPKCDTPMNHQADKLTHPVTAAEAAALTPVFDGVLERVFACPACGWIDSRRASPRDAE
Ga0212128_105692952	3300022563	Thermal Springs	MTKTMTCPKCGGDMNHQADKLVHPVTKEEAASLTAAFDGVVAEVFACPNCGWIEARRTSPGGHP
Ga0209618_10361262	3300025001	Soil	MTCPQCGAEMNHQADKLVHPVTREEAASMTAALDGVIEEVFACPGCGRIESRRVTETVRR
Ga0209109_102862282	3300025160	Soil	MSAPSMTCPKCDTEMNHQADKLAHPVTPEEAAGMTPAFDGAIEVVFACPGCGFIDSRRESPLVRKTGIR
Ga0209109_103792532	3300025160	Soil	VTRHVMTCLKCGAAMNHQADKLVHPVTREEAAGLTPAFDGVVVMVFACPQCGWIESLRQAAPSPEHH
Ga0209431_103239871	3300025313	Soil	PRMSAQSMTCPKCGTEMNHQADKLVHPVTAAEVASMTSTLDGVIEAVFACPRCGWVDSRRSSQPA
Ga0209520_102894283	3300025319	Soil	VTRHVMTCLKCGAAMNHQADKLVHPVTKEEAARMTATLDGVIERIYACPNCGWIDSRRPTETSP
Ga0209640_100380175	3300025324	Soil	MSAPSMTCPKCDTEMNHQADKLVHPTTAEEAARMTPALDGVIESVFACPGCGWIDSRRESGAQAQSR
Ga0209640_101510503	3300025324	Soil	MTCLKCGAAMNHQADKLVHPVTKEEAARMTATLDGVIERIYACPNCGWIDSRRPTETSPS
Ga0209341_101825053	3300025325	Soil	MSAASMTCPKCDTEMNHQADKLVHPTTTEEAARMTPALDGVIESVFACPGCGWIDSRRESGAQAESR
Ga0209341_103319542	3300025325	Soil	MTCLKCGTTMNHQADKLVYPLTAAEAAAMTPALDGVIEIVFACPSCGWIDSRRHQPRLCG
Ga0209341_106956751	3300025325	Soil	MTCPKCGTEMNHQADKLVHPVTKEEAASMTPALDGVIESVFACPGCGWIDSRRVAGSHSVRS
Ga0209342_101166883	3300025326	Soil	MSAPSMTCPKCDTEMNHQADKLVHPTTAEEAAGMTPAFDGAIEVVFACPGCGFIDSRRESPLVRKTGIR
Ga0209342_109630651	3300025326	Soil	VTRHVMTCLKCGAAMNHQPDKLVHPVTKEEAARMTATLDGVIERIYACPNCGWIDS
Ga0209265_10777671	3300026308	Soil	TDWAMSAAGMVCPKCGTPMNHQADKLVYPLTRAEAASMTAAFDGVLEEVFACPNCGWIESRRTTPVSEQR
Ga0209878_10065022	3300027163	Groundwater Sand	VTRPTMTCPKCGSEMNHQADKLVHPVTPEEAAAMTAAFDGVLEIVFACPRCGWIDSLRGAAPATSGD
Ga0209846_10224312	3300027277	Groundwater Sand	MTCPKCGSEMNHQADKLVHPVTPEEAAAMTAAFDGVLEIVFACPRCGWIDSLRGAAPATSGD
Ga0209842_10063431	3300027379	Groundwater Sand	VTRPTMTCPKCGSEMNHQADKLVHPVTPEEAAALTAAFDGVLEIVFACPRCGWIDSLRGAAPATSGD
(restricted) Ga0233416_1000021818	3300027799	Sediment	MSTPPMRCGKCGGEMNHQADKLVHPVTAAEVAAMTPALDGVIEAVFACPACGWIDARRADEPPALGR
(restricted) Ga0233416_100003755	3300027799	Sediment	MTCPKCGGQMNHQADKLVYPLTATEAESTTPGLDGVIETVFACPSCGWVDARREGSPQLRAG
Ga0209701_101053672	3300027862	Vadose Zone Soil	MKAQMTCPQCGAQMNHQADKLVYPRNRDEAARTTEALDGVIEHVFACPNCGRIESDPES
(restricted) Ga0233418_100249253	3300027995	Sediment	MSAPSMRCDRCGGEMNHQADKLVHPVTAAEVAAMTPALDGVIEAVFACPACGFIDARRPDETPAPQR
Ga0247828_102261063	3300028587	Soil	MTCPKCGTEMNHQADKLVLPATREEAASVESTLDGLLEHVFACPGCGWIDARREPGASGN
Ga0307503_107754912	3300028802	Soil	VSSPSMTCPKCGSEMNHQAEKLVHPVTGEETARMTPALDGVILIVFACPRCGWIDAVREGRKS
Ga0307281_102625531	3300028803	Soil	MTCPKCGTEMNHEADKLVHPVTKEEAASMTLALDGVIEIVFACPGCGWIDSRRESELHSERS
Ga0247825_103739032	3300028812	Soil	MTCPKCGTPMNHQADKLVQPVTREDEGAVAELDGILERVFACPGCGWIDSRRETGESTIP
Ga0299906_112380412	3300030606	Soil	MSRPTMTCPKCGAPMNHQADKLVLPLTAEEAAAMTPAFDGVLEIVFACPSCGWIDSRRETSESAASA
Ga0318516_100919104	3300031543	Soil	MTCPECGAEMNHQASKLVHPQTEEEAATLTAAFDGVIEQVFACPACGRIESARVPPPGAS
Ga0318534_104480752	3300031544	Soil	MTSSGMTCTRCGAEMNHQADKLVHPVTEAEAAGMTQALDGVIEKVFACPECGWIDSRRTLAADART
Ga0247727_100130948	3300031576	Biofilm	MTCAKCGAEMNHQADKLVHPVTKEEAAGMTPALDGVIERVFACPGCGWIDSRREAGSHSARS
Ga0315291_104308071	3300031707	Sediment	MTCSKCGTEMNHQADKLVHPVTKEEAASMTLALDGVIEIVFACPGCGWIDARRESGLHSERS
Ga0318497_104209881	3300031805	Soil	MTCPECGAEMNHQASKLVHPQTEEEAATLTAAFDGVIEQVFACPACGRIESAR
Ga0315290_105640062	3300031834	Sediment	VSGHSMACPNCGAEMNHQADKLVHPVTDEEAASMTPALDGVIEIVFACPGCGWIDSRRESGPHPQLS
Ga0315297_100969623	3300031873	Sediment	MTCSKCGMEMNHQADKLVHPVTKEEAASMTPALDGVIEIVFACPGCGWIDARRESGLHSERS
Ga0318551_103108413	3300031896	Soil	MTCPECGAEMNHQASKLVHPQTEEEAATLTAAFDGVIEQVFACPACGRIESARGAGED
Ga0315278_104568642	3300031997	Sediment	MTCSKCGMEMNHQADKLVHPVTKEEAASMTPALDGVIEIVFACPGCGRIESLRGSDLSRSGAA
Ga0318575_105748872	3300032055	Soil	MTCPECGAEMNHQASKLVHPQTEEEAATLTAAFDGVIEQVFACPACGRIESARVPPPGASACSPPRR
Ga0315295_109311332	3300032156	Sediment	MTCPKCGSEMNHQADKLVHPVTKEEAASMTLALDGVIEIVFACPGCGWIDARRESGLHSERS
Ga0315276_108162212	3300032177	Sediment	LSGTAMTCSKCGMEMNHQADKLVHPVTKEEAASMTPALDGVIEIVFACPGCGWIDARRESGLHSERS
Ga0315287_104456514	3300032397	Sediment	CSKCGMEMNHQADKLVHPVTKEEAASMTPALDGVIEIVFACPGCGRIESLRGSDLSRSGA
Ga0315273_121679902	3300032516	Sediment	LSGPAMTCSKCGMEMNHQADKLVHPVTKEEAASMTPALDGVIEIVFACPGCGWIDARRESGLHSERS
Ga0315273_124751472	3300032516	Sediment	VSGHSMACPNCGAEMNHQADKLVHPVTDEEAASMTPALDGVIEIVFACPGCGWI
Ga0335084_112604072	3300033004	Soil	MTCPNCGSEMNHQADKLVHPRTEAEAARMTPALDGVIESVFACPQCGWIDSLREPDAAVQQGS
Ga0214471_106727462	3300033417	Soil	VSRPALTCPRCGTEMNHQADKLVHPVTQAEVANMTAALDGAIEHVFACPGCGWIDSRRETEPHSR
Ga0364943_0119468_379_567	3300034354	Sediment	MTCPKCGTEMNHQADKLVHPVTREEAEGMTPALDGVIVIVFACPGCGWIDSRRELRPHPQPS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters