Basic Information | |
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Family ID | F105082 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 49 residues |
Representative Sequence | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP |
Number of Associated Samples | 87 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 17.00 % |
% of genes near scaffold ends (potentially truncated) | 25.00 % |
% of genes from short scaffolds (< 2000 bps) | 79.00 % |
Associated GOLD sequencing projects | 78 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (84.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (19.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (54.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (77.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 22.00% β-sheet: 8.00% Coil/Unstructured: 70.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Microbial Mat Marine Seawater Seawater Marine Marine Water Surface Seawater Seawater Deep Subsurface Seawater Marine Marine Sediment Marine Marine Aqueous Seawater Freshwater To Marine Saline Gradient Marine Seawater Salt Marsh Marine Estuarine Water Pelagic Marine Seawater Freshwater And Marine Coastal Water And Sediment Marine Marine Water Seawater Sediment Deep Subsurface Pond Water Saline Water And Sediment Hypersaline Lake Sediment Soil Cinachyra Sp. (Marine Sponge) |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
ASMM170b_08145450 | 2100351011 | Coastal Water And Sediment | MPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP |
DelMOSum2011_101331992 | 3300000115 | Marine | MSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQXIITEQAP* |
DelMOSum2011_101481202 | 3300000115 | Marine | MSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSQDLITEQAP* |
DelMOWin2010_100268074 | 3300000117 | Marine | MSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP* |
OpTDRAFT_102532631 | 3300000928 | Freshwater And Marine | MSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVTELTSEDLITEGT |
JGI24006J15134_100944702 | 3300001450 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP* |
JGI24006J15134_101900482 | 3300001450 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVDEATSVDLITEQAP* |
Ga0065861_10642867 | 3300004448 | Marine | MPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLKTEQAP* |
Ga0066222_11339492 | 3300004460 | Marine | MPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP* |
Ga0068515_1075662 | 3300004829 | Marine Water | MSLIIAIGNYIGINQLGITPPYGGEDIITETGVQMVSETGSQDLITEQAP* |
Ga0068511_10278292 | 3300005057 | Marine Water | MSLIIAIGNYIGINQLGITPPYGGEDIVTETGVQMVSETGSQDLITEQAP* |
Ga0068511_11034481 | 3300005057 | Marine Water | MSLIIAIGNYIGINQLGITPPYGGEDIITETGIQMVSELTSEDIITEQAP* |
Ga0066856_101577821 | 3300005404 | Marine | IGINELGITPPYGGEDIITELGVQMVSELTSVDLITEQAP* |
Ga0074648_100232516 | 3300005512 | Saline Water And Sediment | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP* |
Ga0075461_100322703 | 3300006637 | Aqueous | MALINIIGNYIGINELGNTPPYGGRDIVTETGIQMVSELTSQDLITE* |
Ga0098070_1050502 | 3300006726 | Marine | MSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP* |
Ga0098038_10608364 | 3300006735 | Marine | MSLIIAIGNFIGTNQGSVNPPYGGEDVVTEIGIQMVSELGSQDIITEQAP* |
Ga0098038_10684722 | 3300006735 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEATSEDLITEQAP* |
Ga0098039_11463442 | 3300006753 | Marine | MSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP* |
Ga0098054_11313361 | 3300006789 | Marine | MPNLIAIGNFIGINELGITPPYGGEDIITELGVQMVSEATSVDLITEQAP* |
Ga0070754_102438773 | 3300006810 | Aqueous | MSLIIAIGNFIGTNQGSVNPPYGGEDIISELGVQMVSETGSQDLITEQAP* |
Ga0066376_101438864 | 3300006900 | Marine | MTLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP* |
Ga0101649_11018572 | 3300007151 | Cinachyra Sp. (Marine Sponge) | MSLIIAIGNYIGINQLGITPPYGGEDIVTENGVQMVSETGSQDLITEQAP* |
Ga0105019_10688354 | 3300007513 | Marine | NFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP* |
Ga0105020_10704842 | 3300007514 | Marine | MPLIIGIGNWIGINELGITPPYGGEDIITELGVQMVSELTSIDIITEQAP* |
Ga0099849_11825401 | 3300007539 | Aqueous | GNMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVTELTSQDIITEQAP* |
Ga0099849_11947602 | 3300007539 | Aqueous | MSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP* |
Ga0102963_11495924 | 3300009001 | Pond Water | MSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQ |
Ga0102957_14016702 | 3300009027 | Pond Water | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP* |
Ga0102956_11375592 | 3300009033 | Soil | MSLIIAIGNYIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP* |
Ga0115549_12523452 | 3300009074 | Pelagic Marine | MSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVSELTSEDLITEGT* |
Ga0115552_10432476 | 3300009077 | Pelagic Marine | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP* |
Ga0114918_100399992 | 3300009149 | Deep Subsurface | MALINIIGNYIGINELGNTPPYGGKDIITETGIQMVSELTSQDLITE* |
Ga0114918_102768482 | 3300009149 | Deep Subsurface | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP* |
Ga0114996_100797929 | 3300009173 | Marine | MPNLIAIANFIGVNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP* |
Ga0115548_12090912 | 3300009423 | Pelagic Marine | IAIGNFIGTYQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP* |
Ga0114932_105153281 | 3300009481 | Deep Subsurface | YQFKMPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP* |
Ga0115568_101817631 | 3300009498 | Pelagic Marine | MSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQ |
Ga0115011_101283962 | 3300009593 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP* |
Ga0115011_111209552 | 3300009593 | Marine | MPNLIANGIFIGINELGITPPYGGQDIITETGIQVVSELTLQDLITEQAP* |
Ga0114933_100182471 | 3300009703 | Deep Subsurface | IAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP* |
Ga0115012_104531792 | 3300009790 | Marine | MPNIIATGIFIGINELGITPPYGGYDIVTETGIQMVEQKTSQDLITEQAP* |
Ga0129351_10787572 | 3300010300 | Freshwater To Marine Saline Gradient | MSLLIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP* |
Ga0118731_1031074993 | 3300010392 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVKELGVQMVNEATSVDLITEQAP* |
Ga0118733_1048405142 | 3300010430 | Marine Sediment | WIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP* |
Ga0114922_101618815 | 3300011118 | Deep Subsurface | MSLIIAIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP* |
Ga0151654_10146546 | 3300011126 | Marine | MSLIIAIGNYIGTNQGSVNPPYGGEDIITEIGVQMVTELGSQDLITEQAP* |
Ga0151671_11115612 | 3300011253 | Marine | MPFIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP* |
Ga0151661_10716443 | 3300011261 | Marine | GNKIRINEVGINPTYGGEVITTENGVQMFIETGSQDLITGQAP* |
Ga0151661_10716462 | 3300011261 | Marine | MSLIIAIGNYIGINQLGITPHYGGEDIVTETGVQIVSETGSQDLITEQAP* |
Ga0129344_11646382 | 3300012520 | Aqueous | MSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP* |
Ga0160422_100439931 | 3300012919 | Seawater | MPLLIAIGNWIGINELGITPPYGGEDIITETGIQMVSELTSEDLITEQAP* |
Ga0160423_102342056 | 3300012920 | Surface Seawater | MSLIIAIGNYIGINQLGITPPYGGEDIITEAGVQMVSETGRQDLITEQAP* |
Ga0163179_102688002 | 3300012953 | Seawater | MPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEVTSEDLITEQAP* |
Ga0182042_11502963 | 3300016733 | Salt Marsh | MALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITE |
Ga0181385_10212333 | 3300017764 | Seawater | MPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEVTSEDLITEQAP |
Ga0181565_100568528 | 3300017818 | Salt Marsh | MSLIIAIGNFIGTNQGSVNPPYGGEDIISELGVQMVSETGSQDLITEQAP |
Ga0180438_110022402 | 3300017971 | Hypersaline Lake Sediment | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP |
Ga0181561_1001029519 | 3300018410 | Salt Marsh | MALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITEAP |
Ga0181558_1000659426 | 3300018417 | Salt Marsh | MALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLI |
Ga0193965_10394792 | 3300019742 | Freshwater Microbial Mat | MSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSQDLITEQAP |
Ga0211477_100177924 | 3300020374 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEATSEDLITEQAP |
Ga0211677_100036432 | 3300020385 | Marine | MSLIIAIGNFIGTNQGSVNPPYGGEDVVTEIGIQMVSELGSQDIITEQAP |
Ga0211640_102980242 | 3300020465 | Marine | MPNLIAIGNFIGINELGITPPYGGEDIITELGVQMVSEATSVDLITEQAP |
Ga0206126_104963122 | 3300020595 | Seawater | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQA |
Ga0213862_100125463 | 3300021347 | Seawater | MSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP |
Ga0213860_101113413 | 3300021368 | Seawater | MSLIIAIGNYIGINQLGITPPYGGEDIITETGVQMVSETGSQDLITEQAP |
Ga0213868_105335132 | 3300021389 | Seawater | NYIGINQLGITPPYGGEDIVTETGVQMVSETGSQDLITEQAP |
Ga0222718_101571874 | 3300021958 | Estuarine Water | MSLYNIIGIYIGINELGSTPPFGGKDIVTETGLQMVSELTSEDLITEGT |
Ga0222715_101138422 | 3300021960 | Estuarine Water | MALINIIGNYIGINEIGNTPPYGGRDIVTETGIQMVSELASQDLIIEAT |
Ga0222719_100877763 | 3300021964 | Estuarine Water | MALINIIGNYIGINELCNTPPYGGKDIITETGLQMVSELTSQDLITEAP |
Ga0222719_102091792 | 3300021964 | Estuarine Water | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP |
Ga0196901_10812951 | 3300022200 | Aqueous | MSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMV |
Ga0196901_11476882 | 3300022200 | Aqueous | MSLLIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP |
Ga0224504_103889472 | 3300022308 | Sediment | MSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSKDLITEQAP |
Ga0255775_13224981 | 3300022907 | Salt Marsh | IIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITEAP |
(restricted) Ga0233409_100746812 | 3300022938 | Seawater | MSLIIAIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP |
(restricted) Ga0233408_100901792 | 3300023089 | Seawater | MSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVSELTSEDLITEGT |
Ga0210003_10429672 | 3300024262 | Deep Subsurface | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP |
Ga0210003_10432132 | 3300024262 | Deep Subsurface | MALINIIGNYIGINELGNTPPYGGKDIITETGIQMVSELTSQDLITE |
(restricted) Ga0255048_104624721 | 3300024518 | Seawater | AIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP |
Ga0208016_1070971 | 3300025024 | Marine | MSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP |
Ga0207896_10213782 | 3300025071 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVDEATSVDLITEQAP |
Ga0209535_10728692 | 3300025120 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP |
Ga0209094_10661422 | 3300025594 | Pelagic Marine | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP |
Ga0208004_10092944 | 3300025630 | Aqueous | MALINIIGNYIGINELGNTPPYGGRDIVTETGIQMVSELTSQDLITE |
Ga0208160_11412672 | 3300025647 | Aqueous | MSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP |
Ga0208134_11326851 | 3300025652 | Aqueous | MSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDI |
Ga0208134_11364241 | 3300025652 | Aqueous | MPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVD |
Ga0209601_11332981 | 3300025666 | Pelagic Marine | NFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP |
Ga0208162_100102516 | 3300025674 | Aqueous | MSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP |
Ga0208162_11152561 | 3300025674 | Aqueous | GNMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVTELTSQDIITEQAP |
Ga0208425_11172482 | 3300025803 | Aqueous | MSLIIAIGNYIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP |
Ga0209757_100672903 | 3300025873 | Marine | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP |
Ga0209273_104594131 | 3300027790 | Marine Sediment | MPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDL |
Ga0209501_101705962 | 3300027844 | Marine | MPNLIAIANFIGVNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP |
Ga0209404_101973004 | 3300027906 | Marine | MPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP |
Ga0310124_106113972 | 3300031804 | Marine | MPNLIAIANFIGLNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP |
Ga0315334_106827602 | 3300032360 | Seawater | SMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP |
Ga0310342_1003639111 | 3300032820 | Seawater | MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQ |
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