NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105082

Metagenome / Metatranscriptome Family F105082

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105082
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 49 residues
Representative Sequence MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP
Number of Associated Samples 87
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 17.00 %
% of genes near scaffold ends (potentially truncated) 25.00 %
% of genes from short scaffolds (< 2000 bps) 79.00 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (84.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(19.000 % of family members)
Environment Ontology (ENVO) Unclassified
(54.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(77.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54
1ASMM170b_08145450
2DelMOSum2011_101331992
3DelMOSum2011_101481202
4DelMOWin2010_100268074
5OpTDRAFT_102532631
6JGI24006J15134_100944702
7JGI24006J15134_101900482
8Ga0065861_10642867
9Ga0066222_11339492
10Ga0068515_1075662
11Ga0068511_10278292
12Ga0068511_11034481
13Ga0066856_101577821
14Ga0074648_100232516
15Ga0075461_100322703
16Ga0098070_1050502
17Ga0098038_10608364
18Ga0098038_10684722
19Ga0098039_11463442
20Ga0098054_11313361
21Ga0070754_102438773
22Ga0066376_101438864
23Ga0101649_11018572
24Ga0105019_10688354
25Ga0105020_10704842
26Ga0099849_11825401
27Ga0099849_11947602
28Ga0102963_11495924
29Ga0102957_14016702
30Ga0102956_11375592
31Ga0115549_12523452
32Ga0115552_10432476
33Ga0114918_100399992
34Ga0114918_102768482
35Ga0114996_100797929
36Ga0115548_12090912
37Ga0114932_105153281
38Ga0115568_101817631
39Ga0115011_101283962
40Ga0115011_111209552
41Ga0114933_100182471
42Ga0115012_104531792
43Ga0129351_10787572
44Ga0118731_1031074993
45Ga0118733_1048405142
46Ga0114922_101618815
47Ga0151654_10146546
48Ga0151671_11115612
49Ga0151661_10716443
50Ga0151661_10716462
51Ga0129344_11646382
52Ga0160422_100439931
53Ga0160423_102342056
54Ga0163179_102688002
55Ga0182042_11502963
56Ga0181385_10212333
57Ga0181565_100568528
58Ga0180438_110022402
59Ga0181561_1001029519
60Ga0181558_1000659426
61Ga0193965_10394792
62Ga0211477_100177924
63Ga0211677_100036432
64Ga0211640_102980242
65Ga0206126_104963122
66Ga0213862_100125463
67Ga0213860_101113413
68Ga0213868_105335132
69Ga0222718_101571874
70Ga0222715_101138422
71Ga0222719_100877763
72Ga0222719_102091792
73Ga0196901_10812951
74Ga0196901_11476882
75Ga0224504_103889472
76Ga0255775_13224981
77Ga0233409_100746812
78Ga0233408_100901792
79Ga0210003_10429672
80Ga0210003_10432132
81Ga0255048_104624721
82Ga0208016_1070971
83Ga0207896_10213782
84Ga0209535_10728692
85Ga0209094_10661422
86Ga0208004_10092944
87Ga0208160_11412672
88Ga0208134_11326851
89Ga0208134_11364241
90Ga0209601_11332981
91Ga0208162_100102516
92Ga0208162_11152561
93Ga0208425_11172482
94Ga0209757_100672903
95Ga0209273_104594131
96Ga0209501_101705962
97Ga0209404_101973004
98Ga0310124_106113972
99Ga0315334_106827602
100Ga0310342_1003639111
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.00%    β-sheet: 8.00%    Coil/Unstructured: 70.00%
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5101520253035404550MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAPSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
16.0%84.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Microbial Mat
Marine
Seawater
Seawater
Marine
Marine Water
Surface Seawater
Seawater
Deep Subsurface
Seawater
Marine
Marine Sediment
Marine
Marine
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Marine
Seawater
Salt Marsh
Marine
Estuarine Water
Pelagic Marine
Seawater
Freshwater And Marine
Coastal Water And Sediment
Marine
Marine Water
Seawater
Sediment
Deep Subsurface
Pond Water
Saline Water And Sediment
Hypersaline Lake Sediment
Soil
Cinachyra Sp. (Marine Sponge)
19.0%5.0%3.0%3.0%3.0%14.0%3.0%5.0%3.0%4.0%6.0%3.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ASMM170b_081454502100351011Coastal Water And SedimentMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP
DelMOSum2011_1013319923300000115MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQXIITEQAP*
DelMOSum2011_1014812023300000115MarineMSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSQDLITEQAP*
DelMOWin2010_1002680743300000117MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP*
OpTDRAFT_1025326313300000928Freshwater And MarineMSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVTELTSEDLITEGT
JGI24006J15134_1009447023300001450MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP*
JGI24006J15134_1019004823300001450MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVDEATSVDLITEQAP*
Ga0065861_106428673300004448MarineMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLKTEQAP*
Ga0066222_113394923300004460MarineMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP*
Ga0068515_10756623300004829Marine WaterMSLIIAIGNYIGINQLGITPPYGGEDIITETGVQMVSETGSQDLITEQAP*
Ga0068511_102782923300005057Marine WaterMSLIIAIGNYIGINQLGITPPYGGEDIVTETGVQMVSETGSQDLITEQAP*
Ga0068511_110344813300005057Marine WaterMSLIIAIGNYIGINQLGITPPYGGEDIITETGIQMVSELTSEDIITEQAP*
Ga0066856_1015778213300005404MarineIGINELGITPPYGGEDIITELGVQMVSELTSVDLITEQAP*
Ga0074648_1002325163300005512Saline Water And SedimentMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP*
Ga0075461_1003227033300006637AqueousMALINIIGNYIGINELGNTPPYGGRDIVTETGIQMVSELTSQDLITE*
Ga0098070_10505023300006726MarineMSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP*
Ga0098038_106083643300006735MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTEIGIQMVSELGSQDIITEQAP*
Ga0098038_106847223300006735MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEATSEDLITEQAP*
Ga0098039_114634423300006753MarineMSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP*
Ga0098054_113133613300006789MarineMPNLIAIGNFIGINELGITPPYGGEDIITELGVQMVSEATSVDLITEQAP*
Ga0070754_1024387733300006810AqueousMSLIIAIGNFIGTNQGSVNPPYGGEDIISELGVQMVSETGSQDLITEQAP*
Ga0066376_1014388643300006900MarineMTLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP*
Ga0101649_110185723300007151Cinachyra Sp. (Marine Sponge)MSLIIAIGNYIGINQLGITPPYGGEDIVTENGVQMVSETGSQDLITEQAP*
Ga0105019_106883543300007513MarineNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP*
Ga0105020_107048423300007514MarineMPLIIGIGNWIGINELGITPPYGGEDIITELGVQMVSELTSIDIITEQAP*
Ga0099849_118254013300007539AqueousGNMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVTELTSQDIITEQAP*
Ga0099849_119476023300007539AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP*
Ga0102963_114959243300009001Pond WaterMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQ
Ga0102957_140167023300009027Pond WaterMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP*
Ga0102956_113755923300009033SoilMSLIIAIGNYIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP*
Ga0115549_125234523300009074Pelagic MarineMSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVSELTSEDLITEGT*
Ga0115552_104324763300009077Pelagic MarineMSLIIAIGNFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP*
Ga0114918_1003999923300009149Deep SubsurfaceMALINIIGNYIGINELGNTPPYGGKDIITETGIQMVSELTSQDLITE*
Ga0114918_1027684823300009149Deep SubsurfaceMSLIIAIGNFIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP*
Ga0114996_1007979293300009173MarineMPNLIAIANFIGVNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP*
Ga0115548_120909123300009423Pelagic MarineIAIGNFIGTYQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP*
Ga0114932_1051532813300009481Deep SubsurfaceYQFKMPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP*
Ga0115568_1018176313300009498Pelagic MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQ
Ga0115011_1012839623300009593MarineMPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP*
Ga0115011_1112095523300009593MarineMPNLIANGIFIGINELGITPPYGGQDIITETGIQVVSELTLQDLITEQAP*
Ga0114933_1001824713300009703Deep SubsurfaceIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP*
Ga0115012_1045317923300009790MarineMPNIIATGIFIGINELGITPPYGGYDIVTETGIQMVEQKTSQDLITEQAP*
Ga0129351_107875723300010300Freshwater To Marine Saline GradientMSLLIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP*
Ga0118731_10310749933300010392MarineMPLLIAIGNWIGINELGITPPYGGEDIVKELGVQMVNEATSVDLITEQAP*
Ga0118733_10484051423300010430Marine SedimentWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP*
Ga0114922_1016188153300011118Deep SubsurfaceMSLIIAIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP*
Ga0151654_101465463300011126MarineMSLIIAIGNYIGTNQGSVNPPYGGEDIITEIGVQMVTELGSQDLITEQAP*
Ga0151671_111156123300011253MarineMPFIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP*
Ga0151661_107164433300011261MarineGNKIRINEVGINPTYGGEVITTENGVQMFIETGSQDLITGQAP*
Ga0151661_107164623300011261MarineMSLIIAIGNYIGINQLGITPHYGGEDIVTETGVQIVSETGSQDLITEQAP*
Ga0129344_116463823300012520AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP*
Ga0160422_1004399313300012919SeawaterMPLLIAIGNWIGINELGITPPYGGEDIITETGIQMVSELTSEDLITEQAP*
Ga0160423_1023420563300012920Surface SeawaterMSLIIAIGNYIGINQLGITPPYGGEDIITEAGVQMVSETGRQDLITEQAP*
Ga0163179_1026880023300012953SeawaterMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEVTSEDLITEQAP*
Ga0182042_115029633300016733Salt MarshMALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITE
Ga0181385_102123333300017764SeawaterMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEVTSEDLITEQAP
Ga0181565_1005685283300017818Salt MarshMSLIIAIGNFIGTNQGSVNPPYGGEDIISELGVQMVSETGSQDLITEQAP
Ga0180438_1100224023300017971Hypersaline Lake SedimentMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP
Ga0181561_10010295193300018410Salt MarshMALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITEAP
Ga0181558_10006594263300018417Salt MarshMALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLI
Ga0193965_103947923300019742Freshwater Microbial MatMSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSQDLITEQAP
Ga0211477_1001779243300020374MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEATSEDLITEQAP
Ga0211677_1000364323300020385MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTEIGIQMVSELGSQDIITEQAP
Ga0211640_1029802423300020465MarineMPNLIAIGNFIGINELGITPPYGGEDIITELGVQMVSEATSVDLITEQAP
Ga0206126_1049631223300020595SeawaterMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQA
Ga0213862_1001254633300021347SeawaterMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP
Ga0213860_1011134133300021368SeawaterMSLIIAIGNYIGINQLGITPPYGGEDIITETGVQMVSETGSQDLITEQAP
Ga0213868_1053351323300021389SeawaterNYIGINQLGITPPYGGEDIVTETGVQMVSETGSQDLITEQAP
Ga0222718_1015718743300021958Estuarine WaterMSLYNIIGIYIGINELGSTPPFGGKDIVTETGLQMVSELTSEDLITEGT
Ga0222715_1011384223300021960Estuarine WaterMALINIIGNYIGINEIGNTPPYGGRDIVTETGIQMVSELASQDLIIEAT
Ga0222719_1008777633300021964Estuarine WaterMALINIIGNYIGINELCNTPPYGGKDIITETGLQMVSELTSQDLITEAP
Ga0222719_1020917923300021964Estuarine WaterMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP
Ga0196901_108129513300022200AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMV
Ga0196901_114768823300022200AqueousMSLLIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP
Ga0224504_1038894723300022308SedimentMSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSKDLITEQAP
Ga0255775_132249813300022907Salt MarshIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITEAP
(restricted) Ga0233409_1007468123300022938SeawaterMSLIIAIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP
(restricted) Ga0233408_1009017923300023089SeawaterMSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVSELTSEDLITEGT
Ga0210003_104296723300024262Deep SubsurfaceMSLIIAIGNFIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP
Ga0210003_104321323300024262Deep SubsurfaceMALINIIGNYIGINELGNTPPYGGKDIITETGIQMVSELTSQDLITE
(restricted) Ga0255048_1046247213300024518SeawaterAIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP
Ga0208016_10709713300025024MarineMSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP
Ga0207896_102137823300025071MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVDEATSVDLITEQAP
Ga0209535_107286923300025120MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP
Ga0209094_106614223300025594Pelagic MarineMSLIIAIGNFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP
Ga0208004_100929443300025630AqueousMALINIIGNYIGINELGNTPPYGGRDIVTETGIQMVSELTSQDLITE
Ga0208160_114126723300025647AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP
Ga0208134_113268513300025652AqueousMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDI
Ga0208134_113642413300025652AqueousMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVD
Ga0209601_113329813300025666Pelagic MarineNFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP
Ga0208162_1001025163300025674AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP
Ga0208162_111525613300025674AqueousGNMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVTELTSQDIITEQAP
Ga0208425_111724823300025803AqueousMSLIIAIGNYIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP
Ga0209757_1006729033300025873MarineMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP
Ga0209273_1045941313300027790Marine SedimentMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDL
Ga0209501_1017059623300027844MarineMPNLIAIANFIGVNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP
Ga0209404_1019730043300027906MarineMPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP
Ga0310124_1061139723300031804MarineMPNLIAIANFIGLNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP
Ga0315334_1068276023300032360SeawaterSMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP
Ga0310342_10036391113300032820SeawaterMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQ


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