NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105019

Metagenome / Metatranscriptome Family F105019

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105019
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 45 residues
Representative Sequence MGKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANGAK
Number of Associated Samples 67
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 72.97 %
% of genes near scaffold ends (potentially truncated) 4.00 %
% of genes from short scaffolds (< 2000 bps) 15.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (81.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater
(13.000 % of family members)
Environment Ontology (ENVO) Unclassified
(36.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(64.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
Powered by MSAViewer

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.49%    β-sheet: 0.00%    Coil/Unstructured: 63.51%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

51015202530354045MGKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANGAKSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
19.0%81.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater
Freshwater Lake
Freshwater
Freshwater, Plankton
Freshwater Lake
Lake Water
Freshwater
Lake
Marine Plankton
Freshwater
Aquatic
Freshwater
River Water
Freshwater
Aqueous
Freshwater To Marine Saline Gradient
Marine
Estuarine
Estuarine Water
Deep Subsurface
Fracking Water
3.0%10.0%8.0%11.0%9.0%3.0%5.0%4.0%4.0%3.0%13.0%6.0%7.0%4.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
RCM27_100436823300001836Marine PlanktonMGKHHDKIAAALEIRKTVAQRSKNGGKIPGSMNKKKTGYRGIKANNAR*
RCM30_104622763300001842Marine PlanktonMGKHHDKIAAALEIRKAVAQRSKNGGKIPGSMNKKKTGYRGIKANNAR*
RCM26_125617633300001849Marine PlanktonMGKHHEKIAKSLEIRKANHKGPGGKVPGSMNKKKTGYNRNKANGAK*
RCM31_1010443113300001851Marine PlanktonAKALEMRIAVAQRSKNPGGKIPGSMNKKKTGYRGIKANNAR*
GOS2236_103393163300001968MarineKHHEKIAASLEIRKRNHKGPGGKIPGSMNKKKTGYNRVKARAK*
GOS2236_105414663300001968MarineMGKHHDKIAASLEIRKRNHKGPGGKVPGSMNRKKTGYNRVKANNAR*
B570J40625_10005694883300002835FreshwaterMGKHLDKIQASLEVRKANHKGPGGKVPGSMNKKKTGYSSIKSNEAKTRLGK*
JGI25922J50271_1000505363300003413Freshwater LakeMGKHLKKIEAALKIRQANHKGPGGKLPGSMNKKKTGYAKAK*
Ga0068881_151501813300005418Freshwater LakeMGKHHDKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKAKKS*
Ga0070374_1005158053300005517Freshwater LakeMGKHLKKIEAALKIRQANHKGPGGKLPGSMNKKKTGYAR
Ga0068876_1015819633300005527Freshwater LakeMGKHHDKIAKSLEIRQRNHKGPGGKVPGSMNKKKTGYNRVKANNAK*
Ga0068876_1021123533300005527Freshwater LakeMGKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANNAK*
Ga0068876_1078588113300005527Freshwater LakeMGKHHDKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKARKS*
Ga0078894_1029444823300005662Freshwater LakeMGKHLDKIQASLEVRKANHKGPGGKVPGSMNKKKTGYSSIKSNEAKSRLGK*
Ga0078117_100969593300005758Lake WaterMGKHHDKIAASLEIRKRNHKGPGGKVPGSMNRKKTGYNRVKAKKS*
Ga0078117_102369173300005758Lake WaterMGKHHDKIAKSLEIRKNNHKGPGGKVAGSMNKKKTGYNRVKANNAK*
Ga0079957_1004339133300005805LakeMGKHHDKIEASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVRANRSK*
Ga0079957_102760373300005805LakeMGKHHDKIAASLEIRKKNHKGPGGKVPGSMNKKKTGYNRVKANGSK*
Ga0079957_105399043300005805LakeMGKHHDKIAKSLEIRKANHKGPGGKVPGSMNKKKTGYNRQKANGAR*
Ga0079957_108325113300005805LakeMGKHHDKIAGSLEIRKKNHKGPGGKVPGSMNKKKTGY
Ga0079957_118933223300005805LakeMGKHHEKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANNAR*
Ga0075471_1027843413300006641AqueousGKHHEKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKANGAK*
Ga0070749_1002086423300006802AqueousMGKHHDKIAKSLEIRKSNHKGPGGKVPGSMNKKKTGYNRQKANGAR*
Ga0070749_1075092223300006802AqueousMGKHHEKIAASLEIRKRNYKGPGGKVPGSMNKKKTGYNRQKANGAR*
Ga0102978_102979153300007177Freshwater LakeMGKHHDKIAASLEIRRKNHKGPGGKVPGSMNKKKTGYNRVKAKRS*
Ga0102978_105836673300007177Freshwater LakeMAKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANGAK*
Ga0102978_107693683300007177Freshwater LakeAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKAKKS*
Ga0102978_111093723300007177Freshwater LakeMGKHHDKIAKSLEIRKNNHKGPGGKVPGSMNKKKTGYNRIKANGAK*
Ga0099848_116948243300007541AqueousLEIRKANHKGPGGKVPGSMNKKKTGYNRQKANGAR*
Ga0102874_111421223300007546EstuarineMGKHLKKIEAALKVRQANHKGPGGKLPGSMNKKKTGYAKAK*
Ga0099850_135461413300007960AqueousIAKSLEIRKSNHKGPGGKVPGSMNKKKTGYNRQKANGAR*
Ga0114340_1004257103300008107Freshwater, PlanktonMGKHHEKIAKALEIRRSNWKNPAGKAPGSMNKKKTGYNRVKANGAK*
Ga0114340_1008225163300008107Freshwater, PlanktonMAKHHDKIAKSLEIRRANWKNPAGKAPGSMNKKKTGYNRQKANGAK*
Ga0114340_101029263300008107Freshwater, PlanktonMAKHHDKIAKALEIRRSNWKNPAGKAPGSMNKKKTGYNRVRANGSK*
Ga0114340_111141733300008107Freshwater, PlanktonMAKHHDKIAKSLEIRRSNWKNPAGKAPGSMNKKKTGYNRVKANNAK*
Ga0114340_111316613300008107Freshwater, PlanktonMAKHHEKIAKSLEIRRANWKNPAGKAPGSMNKKKTGYNRQKANGAK*
Ga0114343_120734623300008110Freshwater, PlanktonIAKALEIRKANHKGPGGKIPGSMNKKKTGYRGVKSNNAK*
Ga0114344_1000371523300008111Freshwater, PlanktonMAKHLDKIAKSLEIRRSNWKNPAGKAPGSMNKKKTGYSRVKANGSK*
Ga0114344_125385813300008111Freshwater, PlanktonHLDKIQASLEVRKANHKGPGGKVPGSMNKKKTGYSSIKSNEAKTRLGK*
Ga0114346_105211933300008113Freshwater, PlanktonMGKHLNKIQASLEVRKANHKGPGGKVPGSMNKKKTGYSSIKSNEAKTRLGK*
Ga0114350_101795643300008116Freshwater, PlanktonMGKHHDKIAKSLEIRKSHHKGPGGKVPGSMNKKKTGYNRVKANGSK*
Ga0114350_105538243300008116Freshwater, PlanktonMGKHHDKIAKSLEIRRSNHKGPGGKVPGSMNKKKTGYNRVKANGSK*
Ga0104242_108599613300008962FreshwaterMGKHLDKIQASLEIRRANHKDKGGKVPGSMNKKKTGYSSIKANEAKKRLGK*
Ga0103848_103652313300009218River WaterMGKHHDKILKSLEIRKAAHKVPGGKAPGSMNKKKTGYYGVKANGAK*
Ga0103851_100493813300009225River WaterMEGNMGKHHDKILKSLEIRKAAHKVPGGKAPGSMNKKKTGYYGVKANGAK*
Ga0103852_100273423300009385River WaterMGKHYDKILKSLEIRKAAHKVPGGKAPGSMNKKKTGYYGVKANGAK*
Ga0114982_119951933300009419Deep SubsurfaceAKALEIRKANHKGPGGKVPGSMNKKKTGYRGVKSNTAK*
Ga0129333_1004149423300010354Freshwater To Marine Saline GradientMGKHHEKIAKSLEIRKANHKGPGGKVPGSMNKKKTGYNRQKANGAK*
Ga0129333_1009000043300010354Freshwater To Marine Saline GradientMGKHHDKIAASLEIRKRNHKGPGGKVPGSMNRKKTGYNRVKANGAK*
Ga0129333_1024382333300010354Freshwater To Marine Saline GradientMGKHHDKIAASLQISKKKHKVPGVKVPGSMNRKKT
Ga0129333_1027015443300010354Freshwater To Marine Saline GradientMGKHHDKIAKSLEIRKANHKGPGGKVPGSMNKKKTGYNRNKANGAK*
Ga0129333_1100666223300010354Freshwater To Marine Saline GradientMGKHHDKIAASLEIRKKNHKGPGGKVPGSMNRKKTGYSGIKANQAKKS*
Ga0129333_1122362933300010354Freshwater To Marine Saline GradientMAKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANNAK*
Ga0129333_1176180723300010354Freshwater To Marine Saline GradientMGKHHEKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANGAK*
Ga0151620_101628823300011268FreshwaterMGKHLKKIEAALKIRQANHKGPGGKLPGSMNKKKTGYAKVK*
Ga0129337_127462433300012968AqueousMGKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRNKANGAK*
Ga0164293_1038895913300013004FreshwaterMGKHLDKIQASLEVRKANHKGPGGKVPGSMNKKKTGYSSIKSNEAKTRL
(restricted) Ga0172367_1006691753300013126FreshwaterMGKHHDKIAKSLEIRQRNWKNPAGKAPGSMNKKKTGYNRVKANGSK*
(restricted) Ga0172367_1050392333300013126FreshwaterMAKHHDKIAASLEIRRKNHKGPGGKVPGSMNKKKTGYNRVKARKS*
(restricted) Ga0172373_10029015123300013131FreshwaterMGKHHDKIAGSLEIRKKNHKGPGGKVPGSMNKKKTGYNRIKANKAR*
Ga0177922_1039643253300013372FreshwaterMGKHHDKIEASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKAKKS*
(restricted) Ga0172376_10014978153300014720FreshwaterMAKHHDKIAASLEIRKKNHKGPGGKVPGSMNKKKTGYNRVKANGAK*
(restricted) Ga0172376_1038397723300014720FreshwaterMGKHHDKIAASLEIRRKNHKGPGGKVPGSMNKKKTGYNRVKARKS*
Ga0169931_1004275733300017788FreshwaterMGKHHDKIAKSLEIRQRNWKNPAGKAPGSMNKKKTGYNRVKANGSK
Ga0169931_1054147923300017788FreshwaterMAKHHDKIAASLEIRRKNHKGPGGKVPGSMNKKKTGYNRVKARKS
Ga0194113_1049026323300020074Freshwater LakeMGKHHDKILASLELRKKHHKGPGGKVPGSMNKKKTGYSGIRANQARNK
Ga0194113_1067183343300020074Freshwater LakeMGKHHDKIAASLEIRRKNHKGPGGKVPGSMNKKKTGYNRVKARKS
Ga0211733_1064040323300020160FreshwaterMGKHHDKIAAALEVRKANHKSGQGGKVPGSMNKKKTGY
Ga0194115_1001783643300020183Freshwater LakeVGKHHDKIAASLEIRRKNHKGPGGKVPGSMNKKKTGYNRVKARKS
Ga0194116_1014714533300020204Freshwater LakeMGKHHDKIAGSLEIRKKNHKGPGGKVPGSMNKKKTGYNRIKANRAR
Ga0208050_100782823300020498FreshwaterMGKHLDKIQASLEVRKANHKGPGGKVPGSMNKKKTGYSSIKSNEAKTRLGK
Ga0208465_103369323300020570FreshwaterMGKHHDKIAKSLEIRKSHHKGPGGKVPGSMNKKKTGYNRVKANGSK
Ga0194133_1045207543300021091Freshwater LakeVGKHHDKIAGSLEIRKKNHKGPGGKVPGSMNKKKTGYNRIKANRAR
Ga0222714_1015665233300021961Estuarine WaterMGKHHDKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKARKS
Ga0222713_1003968453300021962Estuarine WaterMAKHHDKIAKSLEIRRSNWKNPAGKAPGSMNKKKTGYNRVKANNAK
Ga0222712_10008683203300021963Estuarine WaterMGKHLKKIEAALKIRQANHKGPGGKLPGSMNKKKTGYAKVK
Ga0222712_1011632913300021963Estuarine WaterMGKHLKKIEAALKIRQANHKGPGGKLPGSMNKKKTGYAKAK
Ga0255147_101588633300024289FreshwaterMGKHHEKIAKSLAIRQANHKGPGGKVPGSMNKKKTGYNRNKANGAK
Ga0255178_109990613300024298FreshwaterMGKHHEKIAASLEIRRRNHKGPGGKVPGSMNRKKTGYNRVKANGAK
Ga0255167_103170033300024350FreshwaterMGKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKAKRS
Ga0255142_102886523300024352FreshwaterMGKHHDKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKAKRS
Ga0255176_101570473300024507FreshwaterMGKHHEKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKANGAK
Ga0256345_104489713300024552FreshwaterSLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANGAK
Ga0255283_100742513300024557FreshwaterMGKHHDKIAASLEIRRRNHKGPGGKAPGSMNKKKT
Ga0255276_118324613300024570FreshwaterMGKHHDKIAASLEIRRRNHKGPGGKAPGSMNKKKTG
Ga0255166_1000883263300026473FreshwaterKIAASLEIRRRNHKGPGGKAPGSMNKKKTGYNRVKAKRS
Ga0256334_100843563300026566FreshwaterMGKHHEKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANGAR
Ga0209599_1002378383300027710Deep SubsurfaceAKALEIRKANHKGPGGKVPGSMNKKKTGYRGVKSNTAK
Ga0209972_1023741433300027793Freshwater LakeMGKHHDKIAKSLEIRRSNHKGPGGKVPGSMNKKKTGYNRVKANGSK
Ga0209990_1002149153300027816Freshwater LakeMGKHHDKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKAKKS
Ga0209990_1005972043300027816Freshwater LakeMGKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANGAK
Ga0256331_105736533300028286FreshwaterMGKHHEKIAKSLAIRQANHKGPGGKVPGSMNKKKTGYNRVKAKRS
Ga0256331_110182623300028286FreshwaterMGKHHEKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANGAK
Ga0256331_115221833300028286FreshwaterMGKHHEKIAASLEIRRRNNKRPGRKVPGSMNRKKTGYNRVKANNAR
Ga0119944_1000382223300029930AquaticMGKHHDKIAKSLEIRQRNWKNPAGKAPGSMNRKKTGYNRVKANGAK
Ga0315907_1001050283300031758FreshwaterMAKHHDKIAKSLEIRRANWKNPAGKAPGSMNKKKTGYNRQKANGAK
Ga0315907_1027296233300031758FreshwaterMGKHHDKIAASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVKANNAK
Ga0315909_1065943313300031857FreshwaterMAKHHDKIAKALEIRRSNWKNPAGKAPGSMNKKKTGYNRVRANGSK
Ga0315904_1015043223300031951FreshwaterMGKHHDKIAKSLEIRQRNHKGPGGKVPGSMNKKKTGYNRVKANNAK
Ga0310130_0001709_6967_71043300034073Fracking WaterMGKHHEKIAASLEIRRRNHKGPGGKVPGSMNKKKTGYNRVKARKS

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.