NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104925

Metagenome Family F104925

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104925
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 43 residues
Representative Sequence LLVPGDHFGLPNHIRFGFGEELHHFQEALAETERGLKRVFTD
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.00 %
% of genes near scaffold ends (potentially truncated) 99.00 %
% of genes from short scaffolds (< 2000 bps) 85.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(28.000 % of family members)
Environment Ontology (ENVO) Unclassified
(45.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.
1JGI25383J37093_101005711
2Ga0066397_100884552
3Ga0066674_100294681
4Ga0066680_102106263
5Ga0066690_100770431
6Ga0066688_101634341
7Ga0066688_105380262
8Ga0070703_104022561
9Ga0070713_1022650662
10Ga0070706_1012307071
11Ga0070697_1005849391
12Ga0066697_101239383
13Ga0070695_1001259463
14Ga0066692_105918951
15Ga0066707_107021382
16Ga0066704_102014381
17Ga0066704_107558902
18Ga0066703_102674441
19Ga0066651_100028057
20Ga0066696_105494102
21Ga0079222_108427202
22Ga0066653_107145641
23Ga0075431_1015739462
24Ga0075425_1027442632
25Ga0075425_1028649812
26Ga0073934_102255903
27Ga0099793_105825211
28Ga0099794_104335662
29Ga0066710_1032534122
30Ga0099830_113828221
31Ga0099828_110179291
32Ga0075418_129891272
33Ga0066709_1010115043
34Ga0066709_1028445941
35Ga0066709_1032327232
36Ga0111538_126052031
37Ga0134070_101665041
38Ga0134082_102299852
39Ga0134088_102551381
40Ga0134067_100010457
41Ga0134084_100940272
42Ga0126377_125588662
43Ga0137382_104382582
44Ga0137399_110097991
45Ga0137380_106850182
46Ga0137376_100276496
47Ga0137376_101737601
48Ga0137376_103930102
49Ga0137376_113258071
50Ga0137379_102348803
51Ga0137378_118822341
52Ga0137377_100720485
53Ga0137377_100752824
54Ga0137370_100232864
55Ga0137366_102027651
56Ga0137366_103664172
57Ga0137371_103605241
58Ga0137385_111206841
59Ga0137375_105255172
60Ga0137360_101071151
61Ga0137410_121048612
62Ga0134077_101144932
63Ga0134087_100023271
64Ga0075354_10802902
65Ga0137420_14126902
66Ga0134085_100749771
67Ga0134085_105420781
68Ga0134112_104736631
69Ga0134074_12563972
70Ga0134083_105414201
71Ga0187765_111669522
72Ga0184629_100657451
73Ga0066655_101681562
74Ga0066669_102050061
75Ga0137408_13014581
76Ga0193699_104933922
77Ga0209438_10034237
78Ga0209027_12516191
79Ga0209469_11502342
80Ga0209761_11060211
81Ga0209471_12477822
82Ga0209802_13048982
83Ga0209158_10457203
84Ga0209059_11711662
85Ga0209378_12560062
86Ga0209806_12513852
87Ga0209160_12394002
88Ga0209058_11741881
89Ga0209076_10520582
90Ga0209466_10850662
91Ga0209488_109317152
92Ga0209858_10290012
93Ga0137415_111937231
94Ga0307317_102250772
95Ga0307495_100017414
96Ga0310887_109097731
97Ga0307473_112352121
98Ga0307472_1000321715
99Ga0310810_100465431
100Ga0214471_100799451
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.43%    β-sheet: 0.00%    Coil/Unstructured: 68.57%
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Variant

510152025303540LLVPGDHFGLPNHIRFGFGEELHHFQEALAETERGLKRVFTDSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
97.0%3.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Hot Spring Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Agricultural Soil
Soil
Grasslands Soil
Hardwood Forest Soil
Soil
Soil
Natural And Restored Wetlands
Tropical Peatland
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Groundwater Sand
Populus Rhizosphere
4.0%28.0%12.0%23.0%10.0%5.0%5.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25383J37093_1010057113300002560Grasslands SoilAEHSVLLVPGEHFGLPQHIRFGYGEELQHLQEALAETERALRRVFAD*
Ga0066397_1008845523300004281Tropical Forest SoilSVLLCPGEHFGMPGFLRFGYGGELQHFQEALAETERGLRCLFSD*
Ga0066674_1002946813300005166SoilHDVLLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRAFAD*
Ga0066680_1021062633300005174SoilPGDHFGLPNHLRFGYGEELHHLKDALAETERGLRRVFTD*
Ga0066690_1007704313300005177SoilVRAEHSVLLVPGEHFGLPNHIRFGYGEELHHFQEALAETERGLKRVFAD*
Ga0066688_1016343413300005178SoilVRAEHGVLLVPGDHFGLPNHIRFGYGEELHHFQEALAETERGLKRVLAD*
Ga0066688_1053802623300005178SoilGVLLCPGDHFGMPGFLRFGFGGDLQHFQEALAETERGLRRLFSD*
Ga0070703_1040225613300005406Corn, Switchgrass And Miscanthus RhizospherePGDHFGMPGFLRFGYGGELQQFQEALAETERGLRRLFSD*
Ga0070713_10226506623300005436Corn, Switchgrass And Miscanthus RhizosphereLVPGEHFGLPHYLRLGFGEELHHFREALGETERGLKRAFAD*
Ga0070706_10123070713300005467Corn, Switchgrass And Miscanthus RhizosphereDHSVLLVPGDHFGLPNHIRFGFGEELEHFQEALAETERGLKRVFAD*
Ga0070697_10058493913300005536Corn, Switchgrass And Miscanthus RhizosphereQHSVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFSD*
Ga0066697_1012393833300005540SoilDHFGLPHHIRFGFGEEVHQFEAALAETERGLKRVFTD*
Ga0070695_10012594633300005545Corn, Switchgrass And Miscanthus RhizosphereSVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFTD*
Ga0066692_1059189513300005555SoilPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0066707_1070213823300005556SoilLRAEHSVLLVPGEHFGVPGHLRFGYGEELQHFQEALAETERGLKRMFAD*
Ga0066704_1020143813300005557SoilAEYSVLLVPGEHFGVPGHLRFGYGDELQHFQQALAETARGLKRIFTD*
Ga0066704_1075589023300005557SoilPGEHFGLPHHIRFGYGEELQHLQEALAETERALRRVFAD*
Ga0066703_1026744413300005568SoilHSVLLVPGDHFGLPNHIRFGFGDELHHFREALAETERGLKRVFAD*
Ga0066651_1000280573300006031SoilGDHFGLPRHIRFGFGEELHHFEAALAETERGLKRVFTD*
Ga0066696_1054941023300006032SoilAEYDVLLVPGDHFGLPNHLRFGYGEELHHFKDALAETERGLRRVFTD*
Ga0079222_1084272023300006755Agricultural SoilAQHSVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFTD*
Ga0066653_1071456413300006791SoilRGAIPAPDVVEKLRAQHSVLLCAGDHFGMPGFLRFGFGDELQHFQEALAETERGLRRLFSD*
Ga0075431_10157394623300006847Populus RhizosphereRAQHSVLLCPGDHFGSPGFLRFGYGDELSHFQEALAETERGLRRLFSD*
Ga0075425_10274426323300006854Populus RhizosphereGDHFGMPGFLRFGYGGELQHFQEALAESERGLRRLFSD*
Ga0075425_10286498123300006854Populus RhizosphereVLLVPGDHFGLPNHIRFGFGEELQHFREALAETERGLKRVFAD*
Ga0073934_1022559033300006865Hot Spring SedimentFELPHHLRFGYGQALAGLQAALAETERGLRRVFAD*
Ga0099793_1058252113300007258Vadose Zone SoilEHFGLPQHIRFGYGNELSELQAALAETEHGLKRLFTD*
Ga0099794_1043356623300007265Vadose Zone SoilLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0066710_10325341223300009012Grasslands SoilRAEHSVLLVPGEHFGVPGHLRFGYGDELQHFQEALAETERGLKRIFAD
Ga0099830_1138282213300009088Vadose Zone SoilGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0099828_1101792913300009089Vadose Zone SoilGVLLVPGDHFGLPNHIRFGYGEELHHFQEALAETERGLKRVLAD*
Ga0075418_1298912723300009100Populus RhizosphereLLVPGDQFGMPSYIRFGFGGDMQHFQEALAETERGLRRLFTD*
Ga0066709_10101150433300009137Grasslands SoilGLPNHIRFGYGEELHHFQEALAETERGLKRVFAD*
Ga0066709_10284459413300009137Grasslands SoilGLPNHLRFGYGEELQHLQEALAETERGLRRVFAD*
Ga0066709_10323272323300009137Grasslands SoilVLLVPGEHFGVPGHLRFGYGDELQHFQEALAETERGLKRIFAD*
Ga0111538_1260520313300009156Populus RhizosphereQHSVLLVPGEHFGMPSYLRFGFGDDLQHFQEALAETERALRRLFTD*
Ga0134070_1016650413300010301Grasslands SoilPGDHFGMPGFLRFGYGEDLKHLQEALAETERGLRRLFTD*
Ga0134082_1022998523300010303Grasslands SoilLVPGDHFGLPNHLRFGYGEELHHLKDALAETERGLRRVFTD*
Ga0134088_1025513813300010304Grasslands SoilHSVLLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0134067_1000104573300010321Grasslands SoilVPGDHFGLPNHIRFGFGEELPHFQEALAETERGLKRVFAD*
Ga0134084_1009402723300010322Grasslands SoilGLPHHIRFGFGEELHHFEAALAETERGLKRVFTD*
Ga0126377_1255886623300010362Tropical Forest SoilEKLRAQHSVLLCPGEHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFSD*
Ga0137382_1043825823300012200Vadose Zone SoilQHGVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFSD*
Ga0137399_1100979913300012203Vadose Zone SoilFGLPHHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0137380_1068501823300012206Vadose Zone SoilVLLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0137376_1002764963300012208Vadose Zone SoilFGLPNHIRFGYGEELHHFQEALAETERGLKRVFAD*
Ga0137376_1017376013300012208Vadose Zone SoilSVLLCPGDHFGTPGFLRLGFGGELQHFQEALAETERGLRRLFSD*
Ga0137376_1039301023300012208Vadose Zone SoilDHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFAD*
Ga0137376_1132580713300012208Vadose Zone SoilRAEHGVLLVPGDHFGLPRHIRFGFGEELHHFEAALAETERGLKRVFTD*
Ga0137379_1023488033300012209Vadose Zone SoilLLCPGDHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFTD*
Ga0137378_1188223413300012210Vadose Zone SoilGDHFGMPHHIRFGFGEELHHLQEALAETERGLKRVFID*
Ga0137377_1007204853300012211Vadose Zone SoilAEHNVLLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0137377_1007528243300012211Vadose Zone SoilVLLVPGEHFGLPQHIRFGFGEELHHFEAALAETERGLKRVFTD*
Ga0137370_1002328643300012285Vadose Zone SoilCPGDHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFAD*
Ga0137366_1020276513300012354Vadose Zone SoilVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFSD*
Ga0137366_1036641723300012354Vadose Zone SoilLLVPGDHFGLPNHIRFGFGEELHHFQEALAETERGLKRVFTD*
Ga0137371_1036052413300012356Vadose Zone SoilEHSVLLCPGEHFGLPGYLRFGYGNELSELQEALAETERGLKRVLAD*
Ga0137385_1112068413300012359Vadose Zone SoilSVLLVPGDHFGLPRHLRLGFGEELHHFREALGETERGLKRAFAD*
Ga0137375_1052551723300012360Vadose Zone SoilDHFGLPNYIRFGYGEELHHLQEALAETERGVKQVFAD*
Ga0137360_1010711513300012361Vadose Zone SoilSVLLCPGDHFGMPGFLRFGYGEDLQHFQEALAETERGLRRLFSD*
Ga0137410_1210486123300012944Vadose Zone SoilFGMPHHLRFGFGNELAVLQAALGETERGLRRVMTD*
Ga0134077_1011449323300012972Grasslands SoilVLLVPGDHFGLPNHIRFGFGEELGHFQEALAETERGLKRAFAD*
Ga0134087_1000232713300012977Grasslands SoilRMRAEHSVLLVPGEHFGLPNHIRFGYGEELHHLQEALAETERGLKRVFAD*
Ga0075354_108029023300014308Natural And Restored WetlandsEHDVLLVSGEHFGMPGYIRFGIGGDPAELAAALAETERGLRRLFSD*
Ga0137420_141269023300015054Vadose Zone SoilVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0134085_1007497713300015359Grasslands SoilSVLLVPGEHFGLPNHLRFGYGEELQHLQEALAETERALRRVFAD*
Ga0134085_1054207813300015359Grasslands SoilEHSVLLVPGEHFGLPNHLRFGYGEELQHLQEALAETERGLRRVFAD*
Ga0134112_1047366313300017656Grasslands SoilEHSVLLVPGDHFGLPNHIRFGVGEELDHFQEALAETERGLKRVFTD
Ga0134074_125639723300017657Grasslands SoilMRAEHDVLLVPGEHFGLPNHIRFGFGEELHHFQKALAETERGLKRVFTD
Ga0134083_1054142013300017659Grasslands SoilKMRADHSVLLVPGDHFGLPNHIRFGFGEELRHFQEALAETERGLKRVFAD
Ga0187765_1116695223300018060Tropical PeatlandVPGDHFGAPGYLRFGYGGELEHLRQGLAETEKGLREMFTHPD
Ga0184629_1006574513300018084Groundwater SedimentRAQHSVLLCPGDHFGTPGFLRFGYGGELKQFQDALAETERGLRRLFSD
Ga0066655_1016815623300018431Grasslands SoilGANRRAPPGVLRGPGGHCGMPGFLRFGYGGELQHFQEALAETERGLRRLFTD
Ga0066669_1020500613300018482Grasslands SoilLCPGDHFGMPGFLRFGYGDELQHFQEALAETERGLRRLFSD
Ga0137408_130145813300019789Vadose Zone SoilFGTPGFLRLRFGFGGELQHFQEALAETERGLRRLFSD
Ga0193699_1049339223300021363SoilHSVLLVPGEHFGMPGYLRFGYGEGLQHLQEALAETERGLKRLFS
Ga0209438_100342373300026285Grasslands SoilGDHFGAPGFLRFGFGGELQHFQEALAETERGLRRLFSD
Ga0209027_125161913300026300Grasslands SoilEHSVLLCPGEHFGLPGYLRFGYGNELSELQAALAETERGLKRLLGD
Ga0209469_115023423300026307SoilPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD
Ga0209761_110602113300026313Grasslands SoilVPGEHFGLPQHIRFGYGEELQHLQEALAETERALRRVFAD
Ga0209471_124778223300026318SoilDHFGLPHHIRFGFGEEVRHFEAALAETERGLKRVFTD
Ga0209802_130489823300026328SoilAEYDVLLVPGDHFGLPNHLRLGYGEELHHLKDALAETERGLRRVFTD
Ga0209158_104572033300026333SoilAEHSVLLVPGEHFGLPQHIRFGYGEELQHLQEALAETERALRRVFAD
Ga0209059_117116623300026527SoilPGDHFGLPRHIRFGFGEELHHFEAALAETERGLKRVFTD
Ga0209378_125600623300026528SoilCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFTD
Ga0209806_125138523300026529SoilQHGVLLCPGDHFGMPGFLRFGFGGDLQHFQEALAETERGLRRLFSD
Ga0209160_123940023300026532SoilLLVQGEHFGVPGHLRFGYGDELQHFQQALAETARGLKRIFTD
Ga0209058_117418813300026536SoilKMRANHSVLLVPGDHFGLPNHIRFGFGEELRHFQEALAETERGLKRVFAD
Ga0209076_105205823300027643Vadose Zone SoilFGMPGFLRFGFGGELQHFQEALAETERGLRRLFSD
Ga0209466_108506623300027646Tropical Forest SoilSVLLCPGEHFGMPGFLRFGYGGELQHFQEALAETERGLRCLFSD
Ga0209488_1093171523300027903Vadose Zone SoilDQFGMPSFLRFGFGGDLQHFEEALAETERALRRLFTD
Ga0209858_102900123300027948Groundwater SandDHFGTPGFLRFGYGGELKHFQEALAETERGLRRLFSD
Ga0137415_1119372313300028536Vadose Zone SoilFGMPGFLRFGFGSELQHFQEALAETERGLRRLFSD
Ga0307317_1022507723300028720SoilVRAQHSVLLVPGEHFGMPSFLRFGFGDALQHFQEALAETERALRRLFTD
Ga0307495_1000174143300031199SoilCAGDHFGMPGFLRFGFGDELQHFQEALAETERGLRRLFSD
Ga0310887_1090977313300031547SoilVLLVPGEHFGMPNYLRIGYGDELQHLQEALAETERGLKRILT
Ga0307473_1123521213300031820Hardwood Forest SoilSVLLCPGEHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFSD
Ga0307472_10003217153300032205Hardwood Forest SoilAEHSVLLVPGDHFGLPYHLRLGFGEELRHFREALGETERGLKRAFAD
Ga0310810_1004654313300033412SoilCPGDHFGMPGFLRFGFGDELKHFQEALAETERGLRRLFSD
Ga0214471_1007994513300033417SoilVLLVPGDHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFSD


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