Basic Information | |
---|---|
Family ID | F104833 |
Family Type | Metagenome |
Number of Sequences | 100 |
Average Sequence Length | 46 residues |
Representative Sequence | FPAFAHTTGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 19.00 % |
% of genes from short scaffolds (< 2000 bps) | 19.00 % |
Associated GOLD sequencing projects | 91 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.29 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (81.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (31.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (55.000 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 4.05% β-sheet: 28.38% Coil/Unstructured: 67.57% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.29 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Groundwater Sediment Groundwater Sediment Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Serpentine Soil Grasslands Soil Surface Soil Soil Agricultural Soil Permafrost Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Groundwater Sand Soil Corn Rhizosphere Switchgrass Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Populus Endosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
AL20A1W_10606211 | 3300000880 | Permafrost | TSTNGSPPVLFPTFLHAAGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI* |
JGI10214J12806_106274884 | 3300000891 | Soil | PPLVFPVFAHAAGCGCLASLQVDFAVSVKGTSVGAYELTDTIFLRNSTRI* |
JGI24034J26672_101087771 | 3300002239 | Corn, Switchgrass And Miscanthus Rhizosphere | TKIADYLTSANAFPAFAHTAGCGCLASLRVDFTISLKGSATIDTYDLGDTIYLRNSTRI* |
Ga0062594_1006885782 | 3300005093 | Soil | ANAFPTFAHTVGCSCLASLRVDFVVSNKGSTVGAYELTDTVFLRNSTRL* |
Ga0066678_102130732 | 3300005181 | Soil | TPNVFPAFAHASGCGCLASLQLDFPVSLKGSTIDQYELTDTIYLRNSTRI* |
Ga0066676_103570072 | 3300005186 | Soil | PAFAHTAGCGCLASLQLDFPVSLKGSTIGQYELTDTIYLRNSTRI* |
Ga0070668_1019411392 | 3300005347 | Switchgrass Rhizosphere | PTFAHTVGCSCLASLRVDFVVSNKGSTVGAYELTDTVFLRNSTRL* |
Ga0070688_1008958032 | 3300005365 | Switchgrass Rhizosphere | FPAFAHTTGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI* |
Ga0070705_1014837331 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | AGCGCLASLRVDFTISLKGSATIGTYDLGDTIYLRNSTRI* |
Ga0070662_1009440851 | 3300005457 | Corn Rhizosphere | DYLTSANAFPTFAHTVGCSCLASLRVDFVVSNKGSTVGAYELTDTVFLRNSTRL* |
Ga0070699_1001575171 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | AFAHVTGCLCLASLQVDFNVSVTGTSVGAYDLTDTIFLRNSTRI* |
Ga0066697_104737951 | 3300005540 | Soil | CLASLQLDFPISLKGSTTVDLYELTDTVYLRNSTRI* |
Ga0070695_1011949131 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | AHTVGCQCLASLQVDFAVSNNGSTRDAYELTDTVFLRNSTRL* |
Ga0066701_106680792 | 3300005552 | Soil | FSHVSGCGCLASLSVDLPVSVKGSSAGAYRLQDTIFLRNSTRI* |
Ga0066692_103304422 | 3300005555 | Soil | AFSHVSGCGCLASLSVDLPVSVKGSSAGAYRLQDTIFLRNSTRI* |
Ga0070702_1013792371 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | AHTTGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI* |
Ga0066652_1006304651 | 3300006046 | Soil | PAYVHTVGCSCLASLQLDFNVSNRGSTKDAYELTDTVFLRNSTRL* |
Ga0066652_1012597712 | 3300006046 | Soil | LASLQLDFPVSLKGSTIGQYELTDTVYLRNSTRI* |
Ga0075364_108203091 | 3300006051 | Populus Endosphere | GCLASLEIDFKVSLKGSNVDSYELTDNIFLRNSTRI* |
Ga0066665_109923441 | 3300006796 | Soil | NVFPAFAHASGCGCLASLQLDFPVSLKGSTIDQYELTDTIYLRNSTRI* |
Ga0079221_105081681 | 3300006804 | Agricultural Soil | GRQLAFAHTVGCQCLASLQVDFAVSNNGSTRDAYELTDTVFLRNSTRL* |
Ga0099830_111370842 | 3300009088 | Vadose Zone Soil | AHVTGCLCLASLQVDFNVSVTGTSVGAYDLTDTIFLRNSTRI* |
Ga0105242_112004071 | 3300009176 | Miscanthus Rhizosphere | SPPTVFPAFAHTTGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI* |
Ga0105061_10189621 | 3300009807 | Groundwater Sand | DAFPTFLHETGCSCLASLRVDFPVSLMGSTVDAYELTDTIYLRNSTRI* |
Ga0126309_111878812 | 3300010039 | Serpentine Soil | LASLQVDFVVSVKGTAVGAYELTDTIFLINSTRI* |
Ga0126312_106336542 | 3300010041 | Serpentine Soil | LASLKVDFVVSLKGSAIGSYELTDTIFLRNSTRL* |
Ga0126310_103570982 | 3300010044 | Serpentine Soil | VGCSCLASLRVDFVISNKGSTVDAYELTDTIFLRNSTRL* |
Ga0126311_114482142 | 3300010045 | Serpentine Soil | DYVSNTSGNVFVAFLHASGCNCLASLEVDFKVSLKGSNIDAYELTDKIFLRNSTRI* |
Ga0134070_104033401 | 3300010301 | Grasslands Soil | SGVKFADYLTTANVFPTFAHTAGCGCLASLQLDFPISLKGSTTVDLYELTDTVYLRNSTRI* |
Ga0134084_103021771 | 3300010322 | Grasslands Soil | HAVGCSCLASLRVDFLVSNKRSSLDAYELTDTIFLRNSTRL* |
Ga0134063_100925151 | 3300010335 | Grasslands Soil | ATCGSSGIKYGDYLTTANVFPSFAHASGCGCLASLQLDFPVSLKGSTIDQYELTDTIYLRNSTRI* |
Ga0134062_106426082 | 3300010337 | Grasslands Soil | VFPAFAHTAGCGCLASLQLDFPISLKGSTTVDLYELTDTVYLRNSTRI* |
Ga0134126_103940851 | 3300010396 | Terrestrial Soil | TTCGSSGTKIADYLISANAFPAFAHAAGCGCLASLRVDFTISLKGSATIGTYDLGDTIYLRNSTRI* |
Ga0138514_1000959521 | 3300011003 | Soil | YLTNANAFPTFAHASGCSCLASLRVDFLISNKGSTVDAYELTDTIFLRNSTRI* |
Ga0137391_109621521 | 3300011270 | Vadose Zone Soil | DYLTSGNVFPAFAHVTGCLCLASLQVDFNVSVTGTSVGAYDLTDTIFLRNSTRI* |
Ga0120157_10280811 | 3300011994 | Permafrost | VTGCLCLASLQVDFPVSVKGTSIGAYELKDTIFLRNSTRI* |
Ga0137364_102460801 | 3300012198 | Vadose Zone Soil | FPQFLHAVGCTCLASLRVDFLVSNKGSSRDAYELTDTIFLRNSTRL* |
Ga0137364_114540881 | 3300012198 | Vadose Zone Soil | DYLTTANVFPAFAHTAGCGCLASLQLDFPISLKGSTTVDLYELTDTVYLRNSTRI* |
Ga0137382_110619692 | 3300012200 | Vadose Zone Soil | FAHVTGCLCLASQQADFPVSVQGTSVGAYELQDTIFLRNSTRI* |
Ga0137362_113463381 | 3300012205 | Vadose Zone Soil | GNAFPAFAHVTGCLCLASLQVDFNVSVTGTSVGAYDLTDTIFLRNSTRI* |
Ga0137376_107125822 | 3300012208 | Vadose Zone Soil | VTGCLCLASLQVDFNVSVTGTSVGAYDLTDTIFLRNSTRI* |
Ga0137387_112491221 | 3300012349 | Vadose Zone Soil | KYLTTGTPFTAFTHVVGCGCLASLSVNLPVSVKGSSVGTYRLQDTIFLRNSTRI* |
Ga0137366_101200752 | 3300012354 | Vadose Zone Soil | VTGCLCLASLQVDFNVSVKGTSVGAYDLNDTIFLRNSTRI* |
Ga0137371_101460453 | 3300012356 | Vadose Zone Soil | SLRVDFVVSNRGSTVGVQTYELTDTVFLRNSTRI* |
Ga0137371_102996601 | 3300012356 | Vadose Zone Soil | NGSAPVVFPAFAHDVGCGCLASLQVDFAVSIKGTAVGAYELTDTIFLRNSTRI* |
Ga0137368_109166572 | 3300012358 | Vadose Zone Soil | ACAHDTGCNCLASLRVDFAVSVKGNAVGAYELTDTIYLRNSARV* |
Ga0137358_104969341 | 3300012582 | Vadose Zone Soil | PAFAHTTGCLCLASLQVDFNVSVKGTSVGSYDLTDTIFLRNSTRI* |
Ga0137394_107464011 | 3300012922 | Vadose Zone Soil | LTTAGAFPAFAHTSGCGCLASLQVDFKVSVKGSATIDSYDLADTIYLRNSTRI* |
Ga0137359_117767772 | 3300012923 | Vadose Zone Soil | CLASLQVDFNVSVTGTSVGAYDLTDTIFLRNSTRI* |
Ga0164299_101725101 | 3300012958 | Soil | AFAHTAGCGCLASLQVDFTISLKSSATIDTYDLGDTIYLRNSTRI* |
Ga0164301_106918931 | 3300012960 | Soil | HTTGCGCLASLQVDFAVSVKGTAVGAYELTVTIFLRNSTRI* |
Ga0164302_118436892 | 3300012961 | Soil | MIADYLSNTTGNVFVAFLHTSGCGCLASLEIDFKVSLKGSNVDSYELTDNIFLRNSTRI* |
Ga0134087_108229872 | 3300012977 | Grasslands Soil | CGCIASLSVNLPVSVKGSTVGAYRLQDTIFLRNSTRI* |
Ga0157374_125150291 | 3300013296 | Miscanthus Rhizosphere | HTAGCGCLASLRVDFTISLKGSATIDTYDLGDTIYLRNSTRI* |
Ga0120172_11183261 | 3300013765 | Permafrost | FLHDAGCGCLASLQVDFAVSIKGTAIGAYELTDTIFLRNSTRI* |
Ga0120155_10211983 | 3300013768 | Permafrost | GCGCLASLQVDFAVSIKGTAIGAYELTDTIFLRNSTRI* |
Ga0120155_10734371 | 3300013768 | Permafrost | TNGSPPVLFPTFLHAAGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI* |
Ga0120149_12011012 | 3300014058 | Permafrost | QASLQVDFAVSIKGTAVGAYELTDTIFLRNSTRI* |
Ga0134081_103278211 | 3300014150 | Grasslands Soil | LHAVGCTCLASLRVDFLVSNKGSSRDAYELTDTIFLRNSTRL* |
Ga0134081_103294872 | 3300014150 | Grasslands Soil | DYLTTTNVFPAFAHTAGCGCLASLQLDFPISLKGSTTVDLYELTDTVYLRNSTRI* |
Ga0157380_100554244 | 3300014326 | Switchgrass Rhizosphere | SSGTKIADYLTSANAFPAFAHTAGCGCLASLRVDFTISLKGSATIDTYDLGDTIYLRNSTRI* |
Ga0120170_10280781 | 3300014823 | Permafrost | FPAFAHVTGCLCLASLQVDFPVSVKGTSIGAYELKDTIFLRNSSRI* |
Ga0137409_100415221 | 3300015245 | Vadose Zone Soil | HTTGCLCLASLQVDFNVSVKGTSVGSYDLTDTIFLRNSTRI* |
Ga0134072_100996271 | 3300015357 | Grasslands Soil | DYLTNADAFPTFAHASGCSCLASLRVDFLISNKGSTVDAYELTDTIFLRNSTRI* |
Ga0134089_102662621 | 3300015358 | Grasslands Soil | LASLQVDFPVSVKGTSVGAYELTDTIFLRNSTRI* |
Ga0134085_103212432 | 3300015359 | Grasslands Soil | VTGCLCLASLQVDFPVSVKGTSVGAYELNDTIFLRNSTRI* |
Ga0132256_1011894252 | 3300015372 | Arabidopsis Rhizosphere | ASLASLSVDFEVSIKGSSSVNNYGLADTIFLRNSTRA* |
Ga0184605_104721031 | 3300018027 | Groundwater Sediment | CLASLQVDFPVSVKGTSVGAYELKDTIFLRNSTRI |
Ga0193704_10808781 | 3300019867 | Soil | CGCLASLRVDFTISLKGSATIGTYDLGDTIYLRNSTRI |
Ga0193730_10337252 | 3300020002 | Soil | FAHTAGCGCLASLQVDFTISLKGSATIDTYDLGDTIYLRNSTRI |
Ga0193732_10819012 | 3300020012 | Soil | PAFAHAAGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI |
Ga0193696_10069674 | 3300020016 | Soil | TKIADYLISANAFPAFAHTAGCGCLASLRVDFTISLKGSATIGTYDLGDTIYLRNSTRI |
Ga0210382_104363312 | 3300021080 | Groundwater Sediment | HDVGCGCLASLQVDFAVSVKGSAVGAYELTDTIFLRNSTRI |
Ga0210382_105422331 | 3300021080 | Groundwater Sediment | STSGSPPIVFPAFAHAAGCGCLASLQVDFAVSVKGSAVGAYELTDTIFLRNSTRI |
Ga0193699_103196261 | 3300021363 | Soil | NAFPAFAHTAGCGCLASLKVDFTISLKSSATIGTYDLGDTIYLRNSTRI |
Ga0222622_1000147312 | 3300022756 | Groundwater Sediment | TPPAASVASLRVDFTVSVKSSTTVDTYDLGDTIYLRNSTRI |
Ga0207654_100157105 | 3300025911 | Corn Rhizosphere | IADYLTSANAFPAFAHTAGCGCLASLRVDFTISLKGSATIDTYDLGDTIYLRNSTRI |
Ga0207640_117237951 | 3300025981 | Corn Rhizosphere | PAFAHTVGCTCLASLRVDFVVSNKGSTVGAYELTDTVFLRNSTRL |
Ga0207676_115478732 | 3300026095 | Switchgrass Rhizosphere | HTTGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI |
Ga0209267_11175592 | 3300026331 | Soil | YLTSGDVFPGFAHTTGCLCLASLQVDFNVSVKGTSAGAYDLTDTIFLRNSTRI |
Ga0209058_12565051 | 3300026536 | Soil | AGCGCLASLQLDFPVSLKGSTIGQYELTDTIYLRNSTRI |
Ga0209474_102839301 | 3300026550 | Soil | SANAFPAFTHTSGCSCLASLRVDFLISNKGSTLDAYELTDTIFLRNSTRI |
Ga0209474_106958972 | 3300026550 | Soil | LTTPNVFPAFAHASGCGCLASLQLDFPVSLKGSTIDQYELTDTIYLRNSTRI |
Ga0209879_10648912 | 3300027056 | Groundwater Sand | LTSGNAFPAFAHTSGCGCLASLGVDFIVSVKGSSTVETYELTDTIYLRNSTRI |
Ga0209811_102706302 | 3300027821 | Surface Soil | AHTAGCGCLASLRVDFTISLKGSATIGTYDLGDTIYLRNSTRI |
Ga0209701_101397381 | 3300027862 | Vadose Zone Soil | LCLASLQVDFNVSVTGTSVGAYDLTDTIFLRNSTRI |
Ga0307322_101504312 | 3300028710 | Soil | AFAHTAGCGCLASLRVDFTISLKGSATIGTYDLGDTIYLRNSTRI |
Ga0307309_101250462 | 3300028714 | Soil | HAAGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI |
Ga0307311_101680131 | 3300028716 | Soil | SANAFPAFAHTAGCGCLASLRVDFTISLKGSATIGTYDLGDTIYLRNSTRI |
Ga0307298_100026961 | 3300028717 | Soil | AFPAFAHTSGCLCLASLRVDFTVSVKSSTTVDTYDLGDTIYLRNSTRI |
Ga0307319_101400352 | 3300028722 | Soil | GCGCLASLRVDFTISLKGSATIGTYDLGDTIYLRNSTRI |
Ga0307288_100286252 | 3300028778 | Soil | FPAFAHTSGCLCLASLRVDFTVSVKSSTTVDTYDLGDTIYLRNSTRI |
Ga0307284_100855332 | 3300028799 | Soil | PLVFPVFAHAAGCGCLASLQVDFAVSVKGTAVGAYELTDTIFLRNSTRI |
Ga0307305_103237882 | 3300028807 | Soil | VTGCLCLASLQVDFPVSVKGTSVGAYDLTDTIFLRNSTRI |
Ga0307292_102615811 | 3300028811 | Soil | CLASLRVDFVVSNKGSTVGVDTYELTDTVFLRNSTRV |
Ga0307302_106048312 | 3300028814 | Soil | DYLTTASAFPAFAHTSGCLCLASLQVDFTVSVKSSTTVDTYDLGDTIYLRNSTRI |
Ga0307310_103490822 | 3300028824 | Soil | TMIADYLTTASAFPTFTHTTGSLAALQVDFIVSVKSSATVDSYDLGDTIYLRNSLRA |
Ga0307286_100048181 | 3300028876 | Soil | GCGCLASLRVDFTISLKSSATIGTYDLGDTIYLRNSTRI |
Ga0307286_100183931 | 3300028876 | Soil | PAFAHTSGCLCLASLRVDFTVSVKSSTTVDTYDLGDTIYLRNSTRI |
Ga0307278_102290692 | 3300028878 | Soil | LTSTNGSPPLVFPAFAHDVGCGCLASLKVDFAVSIKGSAVGAYELTDTIFLRNSTRI |
⦗Top⦘ |