Basic Information | |
---|---|
Family ID | F104825 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 47 residues |
Representative Sequence | NIFNQVNFDIPNTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF |
Number of Associated Samples | 87 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 96.00 % |
% of genes from short scaffolds (< 2000 bps) | 92.00 % |
Associated GOLD sequencing projects | 83 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.17 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (96.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (34.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (59.000 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.17 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Freshwater Sediment Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Soil Soil Soil Grasslands Soil Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Soil Sediment Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
F14TC_1017699611 | 3300000559 | Soil | EFFNVFNQVNFDIPNTAVNNQATLGRITXXXXXXXDPRILQFGLKFVF* |
Ga0062589_1019605982 | 3300004156 | Soil | TSSYVQAKVEFFNIFNMVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0066676_107827452 | 3300005186 | Soil | NLNVPNTAVNNQATLGRITTTDPGSGDPRILQFGLKFVF* |
Ga0066388_1053822422 | 3300005332 | Tropical Forest Soil | RVEFFNIFNQVNFDIPNVAVNNQATLGRITRTDPANPDPRILQFGLKFVF* |
Ga0068868_1005988822 | 3300005338 | Miscanthus Rhizosphere | ASSYVQARVEFFNIFNQVNLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF* |
Ga0070687_1003166501 | 3300005343 | Switchgrass Rhizosphere | FNSSSYVQARVEFFNIFNQVNLDIPNTAVNNPATLGRITRTDPGSGDPRILQFGLKLVF* |
Ga0066686_106486122 | 3300005446 | Soil | RVEFFNFFNQVNLDIPNTAVNNQSTLGRITRTDPSSGDPRILQFGLKLVF* |
Ga0066689_105750352 | 3300005447 | Soil | IFNMVNFDLPGRAANNTASLGRITQTDLSTNGDPRIVQFGLKFVF* |
Ga0070685_106958991 | 3300005466 | Switchgrass Rhizosphere | SYVQARVEFFNIFNQVNLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF* |
Ga0070698_1001045414 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | FNVFNMVNYDIPNTAVNNLATLGRITRTDPSSGDPRILQFGLKLVF* |
Ga0070698_1015695782 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | VEFFNIFNQVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0070697_1017823381 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | RVEFFNVFNQVNFDVPNTAVNNQATLGRITRTDPNSGDPRVLQFGLKFVF* |
Ga0068853_1021996102 | 3300005539 | Corn Rhizosphere | EFFNVFNQVNFDVPNTAVNNQATLGRITRTDPGSGDPRILQFGLKVVF* |
Ga0070695_1012905042 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | FNMVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0070696_1002976441 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | IFNQVNFDIPNTAVNNPATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0070704_1015985703 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | VEFFNIFNQVNFDIPNVAVNNAATLGRITRTDPSSVDPRILQFGLKFVF* |
Ga0066698_103028452 | 3300005558 | Soil | EFFNIFNMVNFGLLGMSANNTASFGRIIGVDGDLGDPRIIQFGLKFVF* |
Ga0066700_108692561 | 3300005559 | Soil | DLPARAANNTASLGRITQTDLSTNGDPRIVQFGLKFVF* |
Ga0066703_102756942 | 3300005568 | Soil | MINLDIPNTAVNNQSTLGRITRTDPISGDPRILQFGLKFVF* |
Ga0070702_1016490052 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | HLNTSSYVQAKVEFFNIFNMINLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF |
Ga0068859_1001479062 | 3300005617 | Switchgrass Rhizosphere | IFNQVNLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF* |
Ga0068861_1002703113 | 3300005719 | Switchgrass Rhizosphere | FNSSSYVQMRVEFFNIFNQVNLDIPNTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0068861_1023011761 | 3300005719 | Switchgrass Rhizosphere | VNFDVPNNAVNNQATLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0066652_1010987951 | 3300006046 | Soil | RVEFFNIFNQVNLNVPNTATNNAATLGRITSTDPGSGDPRILQFGLKFVF* |
Ga0075417_100152143 | 3300006049 | Populus Rhizosphere | DIPNTAVNNQATLGRITRTDTSSGDPRILQFGLKFVF* |
Ga0075417_106363592 | 3300006049 | Populus Rhizosphere | VEFFNIFNQVNFDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0066665_115545022 | 3300006796 | Soil | NFDLPGRAANNTASLGRITQTDPSLGDPRILQFGLKFVF* |
Ga0066659_115348091 | 3300006797 | Soil | TSVSNAATLGRITTTDGTSNGNQGDPRIIQFGLKFVF* |
Ga0075433_103206693 | 3300006852 | Populus Rhizosphere | EFFNIFNQVNFDIPNTAVSNQSTLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0075425_1000718614 | 3300006854 | Populus Rhizosphere | VFNHVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFLF* |
Ga0075426_103109732 | 3300006903 | Populus Rhizosphere | DVPNTAVNNQATLGRITRTDPNSGDPRILQFGLKVVF* |
Ga0075426_115680051 | 3300006903 | Populus Rhizosphere | DIPNTAVNNQATLGRITRTDPGSGDPRILQFGLKVVF* |
Ga0075424_1012057052 | 3300006904 | Populus Rhizosphere | EFFNVFNQVNFDVPNTAVNNQATLGRITRTDPSSGDPRVLQFGLKFVF* |
Ga0075419_108554122 | 3300006969 | Populus Rhizosphere | FNIFNQVNLDVPNTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0075435_1018287702 | 3300007076 | Populus Rhizosphere | VEFFNIFNMVNLDVPNTAVNNQATLGRITRTDPSSGDPRILQFGLKVVF* |
Ga0099830_108076722 | 3300009088 | Vadose Zone Soil | EFFNVFNQVNFDVPNTAVNNQSTLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0099828_112067622 | 3300009089 | Vadose Zone Soil | GSSYVQARVEFFNIFNQVNFDIPNTAVNNQATLGRITRTDPGSGDPRIPQFGLKFVF* |
Ga0111539_113788082 | 3300009094 | Populus Rhizosphere | FNASSYVQARIEFFNIFNQVNFDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0111539_118935112 | 3300009094 | Populus Rhizosphere | FNIFNQVNFDIPQTNRTSSTFGQITRTDPSFGDPRIIQFGLKFVF* |
Ga0111539_133946621 | 3300009094 | Populus Rhizosphere | NMVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0114129_111889581 | 3300009147 | Populus Rhizosphere | EFFNVFNQVNLDIPKTAVNNQATLGRITNTDPSSGDPRILQFGLKFLF* |
Ga0105243_101496101 | 3300009148 | Miscanthus Rhizosphere | NIFNQVNFDIPNTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0111538_127607712 | 3300009156 | Populus Rhizosphere | SSYVQARVEFFNIFNQVNLDVPNTATNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0075423_120406182 | 3300009162 | Populus Rhizosphere | VQAKVEFFNIFNMVNLDVPNTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0105242_124693891 | 3300009176 | Miscanthus Rhizosphere | NPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF* |
Ga0105248_133186231 | 3300009177 | Switchgrass Rhizosphere | FFNIFNQVNLDVPNTAVNNQATLGRITRTDPGSGDPRILQFGLKLVF* |
Ga0105249_107159151 | 3300009553 | Switchgrass Rhizosphere | KVEFFNIFNMVNLDIPNTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0134082_105178361 | 3300010303 | Grasslands Soil | QVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFLF* |
Ga0126377_129106921 | 3300010362 | Tropical Forest Soil | NFDVPNTAVNNQATLGRITSTDPGSGGPRILQFGLKFVF* |
Ga0134126_130190271 | 3300010396 | Terrestrial Soil | NQVNFDVPNTAVNNQATLGRITRTDPGSGDPRILQFGLKVVF* |
Ga0134127_119195622 | 3300010399 | Terrestrial Soil | VNFDVPNTAVNNQATLGRVTRTDPSSGDPRILQFGLKFTF* |
Ga0134122_131237431 | 3300010400 | Terrestrial Soil | ASYVQARVEFFNIFNQVNLDVPNTATNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0134122_133283092 | 3300010400 | Terrestrial Soil | VEFFNVFNQVNFDIPNTAVNNQATLGRITRTDPNSGDPRILQFGLKYVF* |
Ga0137391_106307682 | 3300011270 | Vadose Zone Soil | NTAVNNPATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0137375_103367031 | 3300012360 | Vadose Zone Soil | NTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0137375_105950452 | 3300012360 | Vadose Zone Soil | PNTAVNNQSTLGRITRTDPSSGDPRILQFGLKYVF* |
Ga0137358_106244261 | 3300012582 | Vadose Zone Soil | NFDVPNTAVNNQATLGRITRTDPSSGDPRILQFGLKLVF* |
Ga0157288_103541511 | 3300012901 | Soil | FFNIFNMVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0164302_110514842 | 3300012961 | Soil | RVEFFNIFNQVNLDVPNNATNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0134110_100044932 | 3300012975 | Grasslands Soil | MVNFDIPNTAVNNPSTLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0134073_102128822 | 3300015356 | Grasslands Soil | EFFNIFNMVNFDIPNTAVNNPSTLGRITRTDPSSGDPRILQFGLKFVF* |
Ga0132258_115513984 | 3300015371 | Arabidopsis Rhizosphere | NQVNLDVPNNATNNQATLGRITRTDPGSGDPRILQFGLKFVF* |
Ga0132258_118852601 | 3300015371 | Arabidopsis Rhizosphere | RVEFFNVFNLVNLDVPNTAVNNQATLGRITRTDPSSGDPRILQFGLKLVF* |
Ga0184634_103320122 | 3300018031 | Groundwater Sediment | ARIEFFNIFNQVNFDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF |
Ga0184625_103459412 | 3300018081 | Groundwater Sediment | MGLSKNFRFNSSSYVQARVEFFNIFNQVNLDVPNTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF |
Ga0066662_118763192 | 3300018468 | Grasslands Soil | IFNMVNFDLPGRAANNTASLGRITQTDPSLGDPRILQFGLKFVF |
Ga0173481_104672281 | 3300019356 | Soil | KNFRFNSSSYVQMRVEFFNIFNQVNLDIPNTAVNNQATLGRITRTDPGSGDPRILQFGLKFVF |
Ga0193751_11136141 | 3300019888 | Soil | IFNQVNFDFPKVAVNNASTLGKIVATDPNSGDPRIIQFGLKFVF |
Ga0193755_11192531 | 3300020004 | Soil | FNQVNFDVPNNAVNNLSTLGRITRTDPSSGDPRILQFGLKFVF |
Ga0179594_102987612 | 3300020170 | Vadose Zone Soil | VPNNAVNNLSTLGRITRTDPSSGDPRILQFGLKLVF |
Ga0247799_10281591 | 3300023072 | Soil | NMVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF |
Ga0207697_100952621 | 3300025315 | Corn, Switchgrass And Miscanthus Rhizosphere | VSKNFRFNSSSYVQARVEFFNIFNQVNLDIPNTAVNNPATLGRITRTDPGSGDPRILQFGLKLVF |
Ga0209640_101533033 | 3300025324 | Soil | VEFFNVFNQVNFDHPRNSGENAAVSGANFGRITRTDPSFGDPRIIQFGLKFVF |
Ga0207681_102484911 | 3300025923 | Switchgrass Rhizosphere | FDVPNTAVNNQATLGRITRTDPGSGDPRILQFGLKVVF |
Ga0207681_109139423 | 3300025923 | Switchgrass Rhizosphere | KVEFFNIFNMVNLDIPNTAVNNQATLGRITRTDPSSGDPRILKFGLKFVF |
Ga0207659_110308311 | 3300025926 | Miscanthus Rhizosphere | IPNTAVNNQATLGRITRTDPSSGDPRILQFGLKLVF |
Ga0207670_101614202 | 3300025936 | Switchgrass Rhizosphere | SKNFRFNSSSYVQARVEFFNIFNQVNLDIPNTAVNNPATLGRITRTDPGSGDPRILQFGLKLVF |
Ga0207670_106527943 | 3300025936 | Switchgrass Rhizosphere | QARVEFFNIFNQVNLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF |
Ga0207669_114253631 | 3300025937 | Miscanthus Rhizosphere | RFNASSYVQARVEFFNIFNQVNLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFV |
Ga0207711_101053001 | 3300025941 | Switchgrass Rhizosphere | FNIFNQVNLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF |
Ga0207711_109113362 | 3300025941 | Switchgrass Rhizosphere | FRFNSSSYVHARVEFFNIFNQVNLDIPNNAVNNPATLGRITRTDPGSGDPRILQFGLKFV |
Ga0207651_105638252 | 3300025960 | Switchgrass Rhizosphere | NFRFNSSSYVQARVEFFNIFNQVNLDIPNTAVNNPATLGRITRTDPGSGDPRILQFGLKLVF |
Ga0207640_117646312 | 3300025981 | Corn Rhizosphere | VFNQVNFDVPNSAVNNQSTLGRITRTDPGSGDPRILQFGLKFVF |
Ga0207677_111454131 | 3300026023 | Miscanthus Rhizosphere | QVNLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF |
Ga0207703_102847061 | 3300026035 | Switchgrass Rhizosphere | FRFNASSYVQARVEFFNIFNQVNLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF |
Ga0207641_111921621 | 3300026088 | Switchgrass Rhizosphere | RVEFFNIFNQVSLDNPNTAVNNQATLGRITQTLAGGLGDPRILQFGLKFVF |
Ga0207675_1025715161 | 3300026118 | Switchgrass Rhizosphere | VPNNAVNNQATLGRITRTDPSSGDPRILQFGLKFVF |
Ga0209131_13875331 | 3300026320 | Grasslands Soil | NVQFRAEIFNIFNQVNFDIPARGANNTSTLGKISQTDPNSGEPRIIQFGLKFVF |
Ga0209577_100527755 | 3300026552 | Soil | FDIPNTAVNNQSTLGRITRTDPSSGDPRILQFGLKFVF |
Ga0209703_11850152 | 3300027723 | Freshwater Sediment | FNQVNFDLPNTNVSGGNFGRITRTDPSFGDPRILQFGLKFVF |
Ga0209814_101354641 | 3300027873 | Populus Rhizosphere | PNTAVNNQATLGRITRTDTSSGDPRILQFGLKFVF |
Ga0209814_104021672 | 3300027873 | Populus Rhizosphere | RVEFFNIFNQVNFDIPNTAVSNQSTLGRITRTDPSSGDPRILQFGLKFVF |
Ga0247663_10892511 | 3300028145 | Soil | VEFINVFNLVNFDIPNTAVNNQSTLGRITRTDPGSGDPRILQFGLKVVF |
Ga0307306_101953481 | 3300028782 | Soil | FNIFNQVNFDVPGTSVSNATTLGKFTATDPNSGDPRIIQFGLKFVF |
Ga0307282_104949942 | 3300028784 | Soil | PNTAVNNLATLGRITSTDSGSGDPRILQFGLKFVF |
Ga0307506_101546662 | 3300031366 | Soil | IPNRAVNNQATLGRITATNPDAGDPRIVQFGLKFVF |
Ga0308194_101122441 | 3300031421 | Soil | NFNVPNTAVNNQATLGRITSTDPGSGDPRILQFGLKFVF |
Ga0310813_108228741 | 3300031716 | Soil | NIFNMVNLDIPNTAVNNQATLGRITRTDPSSGDPRILQFGLKFVF |
Ga0310902_102779902 | 3300032012 | Soil | NIFNQVNLDVPNTATNNLATLGRITRTDPGSGDPRILQFGLKFVF |
Ga0364929_0294834_1_186 | 3300034149 | Sediment | FHFNGSSYVQARVEFFNIFNQVNFDIPNVAVNNAATLGRITRTDPGSGDPRILQFGLKFV |
⦗Top⦘ |