NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F104759

Metagenome Family F104759

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104759
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 75 residues
Representative Sequence MTNNFLQDSKGNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRR
Number of Associated Samples 76
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 18.00 %
% of genes near scaffold ends (potentially truncated) 34.00 %
% of genes from short scaffolds (< 2000 bps) 72.00 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (73.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(40.000 % of family members)
Environment Ontology (ENVO) Unclassified
(40.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(88.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 54.72%    β-sheet: 0.00%    Coil/Unstructured: 45.28%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF05954Phage_GPD 5.00
PF14088DUF4268 4.00
PF02945Endonuclease_7 3.00
PF05489Phage_tail_X 3.00
PF09374PG_binding_3 2.00
PF00004AAA 2.00
PF13539Peptidase_M15_4 2.00
PF12571DUF3751 1.00
PF09684Tail_P2_I 1.00
PF06995Phage_P2_GpU 1.00
PF01381HTH_3 1.00
PF00436SSB 1.00
PF00664ABC_membrane 1.00
PF02498Bro-N 1.00
PF16316DUF4956 1.00
PF00334NDK 1.00
PF16363GDP_Man_Dehyd 1.00
PF13580SIS_2 1.00
PF16576HlyD_D23 1.00
PF04471Mrr_cat 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3500Phage protein DMobilome: prophages, transposons [X] 5.00
COG5004P2-like prophage tail protein XMobilome: prophages, transposons [X] 3.00
COG0105Nucleoside diphosphate kinaseNucleotide transport and metabolism [F] 1.00
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 1.00
COG2965Primosomal replication protein NReplication, recombination and repair [L] 1.00
COG3499Phage protein UMobilome: prophages, transposons [X] 1.00
COG3617Prophage antirepressorMobilome: prophages, transposons [X] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A73.00 %
All OrganismsrootAll Organisms27.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001355|JGI20158J14315_10001174All Organisms → cellular organisms → Bacteria19331Open in IMG/M
3300001959|GOS2247_1026057Not Available1330Open in IMG/M
3300002228|S2T7FKBa104N_1288969Not Available1190Open in IMG/M
3300002228|S2T7FKBa104N_1539802All Organisms → cellular organisms → Bacteria → Proteobacteria15274Open in IMG/M
3300002483|JGI25132J35274_1005770All Organisms → cellular organisms → Bacteria3118Open in IMG/M
3300002483|JGI25132J35274_1020887Not Available1543Open in IMG/M
3300004097|Ga0055584_100259682Not Available1775Open in IMG/M
3300004277|Ga0066611_10203892Not Available675Open in IMG/M
3300005433|Ga0066830_10003949All Organisms → cellular organisms → Bacteria2687Open in IMG/M
3300005510|Ga0066825_10006437All Organisms → cellular organisms → Bacteria → Proteobacteria3845Open in IMG/M
3300005510|Ga0066825_10108810Not Available1011Open in IMG/M
3300006025|Ga0075474_10099558Not Available940Open in IMG/M
3300006802|Ga0070749_10350771Not Available820Open in IMG/M
3300006889|Ga0056107_106889Not Available672Open in IMG/M
3300006916|Ga0070750_10086574Not Available1465Open in IMG/M
3300006916|Ga0070750_10213044Not Available850Open in IMG/M
3300006916|Ga0070750_10396592Not Available577Open in IMG/M
3300007560|Ga0102913_1123981Not Available836Open in IMG/M
3300008012|Ga0075480_10625536Not Available508Open in IMG/M
3300009426|Ga0115547_1114112All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.882Open in IMG/M
3300009440|Ga0115561_1253038Not Available657Open in IMG/M
3300010885|Ga0133913_11402535Not Available1777Open in IMG/M
3300011189|Ga0136558_1126394Not Available611Open in IMG/M
3300017697|Ga0180120_10099807Not Available1264Open in IMG/M
3300017950|Ga0181607_10607433Not Available574Open in IMG/M
3300017968|Ga0181587_10381714Not Available934Open in IMG/M
3300017969|Ga0181585_10089437All Organisms → cellular organisms → Bacteria → Proteobacteria2329Open in IMG/M
3300018041|Ga0181601_10407531Not Available725Open in IMG/M
3300018048|Ga0181606_10375360Not Available766Open in IMG/M
3300018415|Ga0181559_10222671Not Available1074Open in IMG/M
3300018417|Ga0181558_10206980Not Available1121Open in IMG/M
3300018421|Ga0181592_10531964Not Available807Open in IMG/M
3300018428|Ga0181568_10586949Not Available880Open in IMG/M
3300018868|Ga0187844_10085855Not Available1435Open in IMG/M
3300019737|Ga0193973_1048684Not Available571Open in IMG/M
3300020159|Ga0211734_10505629All Organisms → cellular organisms → Bacteria → Proteobacteria5868Open in IMG/M
3300021373|Ga0213865_10426710Not Available582Open in IMG/M
3300021958|Ga0222718_10058544Not Available2409Open in IMG/M
3300021964|Ga0222719_10514510Not Available715Open in IMG/M
3300024180|Ga0228668_1000087All Organisms → cellular organisms → Bacteria → Proteobacteria49800Open in IMG/M
3300024180|Ga0228668_1000147All Organisms → cellular organisms → Bacteria → Proteobacteria33420Open in IMG/M
3300024180|Ga0228668_1000222All Organisms → cellular organisms → Bacteria → Proteobacteria26167Open in IMG/M
3300024180|Ga0228668_1000771All Organisms → cellular organisms → Bacteria → Proteobacteria11981Open in IMG/M
3300024180|Ga0228668_1001687All Organisms → cellular organisms → Bacteria → Proteobacteria7184Open in IMG/M
3300024180|Ga0228668_1006132All Organisms → cellular organisms → Bacteria → Proteobacteria3203Open in IMG/M
3300024180|Ga0228668_1019752Not Available1533Open in IMG/M
3300024180|Ga0228668_1025648Not Available1289Open in IMG/M
3300024192|Ga0228637_1002175All Organisms → cellular organisms → Bacteria → Proteobacteria4616Open in IMG/M
3300024192|Ga0228637_1039141Not Available963Open in IMG/M
3300024192|Ga0228637_1100413Not Available574Open in IMG/M
3300024226|Ga0228667_1025993Not Available1175Open in IMG/M
3300024231|Ga0233399_1032648All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1480Open in IMG/M
3300024235|Ga0228665_1120748Not Available539Open in IMG/M
3300024236|Ga0228655_1022917All Organisms → cellular organisms → Bacteria1545Open in IMG/M
3300024250|Ga0228677_1023066All Organisms → cellular organisms → Bacteria → Proteobacteria1131Open in IMG/M
3300024281|Ga0228610_1004207Not Available1306Open in IMG/M
3300024281|Ga0228610_1026924Not Available723Open in IMG/M
3300024281|Ga0228610_1028544Not Available709Open in IMG/M
3300024293|Ga0228651_1076372Not Available779Open in IMG/M
3300024294|Ga0228664_1060278Not Available895Open in IMG/M
3300024315|Ga0228618_1029286Not Available821Open in IMG/M
3300024318|Ga0233400_1047791Not Available1094Open in IMG/M
3300024318|Ga0233400_1130375Not Available536Open in IMG/M
3300024319|Ga0228670_1089866All Organisms → Viruses628Open in IMG/M
3300024359|Ga0228628_1063525Not Available762Open in IMG/M
3300024359|Ga0228628_1105291Not Available529Open in IMG/M
3300024415|Ga0228662_1154290All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → unclassified Autographiviridae → Synechococcus phage S-SRP01501Open in IMG/M
(restricted) 3300024519|Ga0255046_10642360Not Available512Open in IMG/M
(restricted) 3300024521|Ga0255056_10174488Not Available933Open in IMG/M
3300025131|Ga0209128_1033138Not Available2071Open in IMG/M
3300025151|Ga0209645_1009811Not Available3886Open in IMG/M
3300025483|Ga0209557_1046699Not Available1123Open in IMG/M
3300025663|Ga0209775_1168906Not Available607Open in IMG/M
3300025815|Ga0208785_1037993Not Available1424Open in IMG/M
3300025860|Ga0209119_1071894Not Available1632Open in IMG/M
3300025876|Ga0209223_10037111All Organisms → cellular organisms → Bacteria → Proteobacteria3112Open in IMG/M
3300025876|Ga0209223_10052459All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2475Open in IMG/M
3300025876|Ga0209223_10058171Not Available2311Open in IMG/M
3300025876|Ga0209223_10071308Not Available2010Open in IMG/M
3300025876|Ga0209223_10152614Not Available1184Open in IMG/M
3300025880|Ga0209534_10164818Not Available1152Open in IMG/M
3300025890|Ga0209631_10003137All Organisms → cellular organisms → Bacteria19302Open in IMG/M
3300026123|Ga0209955_1062785Not Available728Open in IMG/M
3300026201|Ga0208127_1020777Not Available2284Open in IMG/M
3300026201|Ga0208127_1123920Not Available645Open in IMG/M
3300026506|Ga0228604_1015321Not Available1030Open in IMG/M
3300026506|Ga0228604_1075665Not Available568Open in IMG/M
3300026511|Ga0233395_1154783Not Available537Open in IMG/M
3300026517|Ga0228607_1078894Not Available833Open in IMG/M
3300028008|Ga0228674_1199466Not Available643Open in IMG/M
3300028129|Ga0228634_1015458Not Available2448Open in IMG/M
3300028135|Ga0228606_1087494Not Available805Open in IMG/M
3300028196|Ga0257114_1007511All Organisms → cellular organisms → Bacteria6038Open in IMG/M
3300028279|Ga0228613_1133711Not Available580Open in IMG/M
3300028280|Ga0228646_1018103Not Available1750Open in IMG/M
3300028418|Ga0228615_1020476All Organisms → cellular organisms → Bacteria → Proteobacteria2267Open in IMG/M
3300028419|Ga0228625_1001749All Organisms → cellular organisms → Bacteria → Proteobacteria7265Open in IMG/M
3300031999|Ga0315274_10816527Not Available986Open in IMG/M
3300034072|Ga0310127_113880Not Available1135Open in IMG/M
3300034073|Ga0310130_0000237All Organisms → cellular organisms → Bacteria → Proteobacteria45958Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater40.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine11.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine10.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh9.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous7.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine3.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.00%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water2.00%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment1.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.00%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.00%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Gulf → Unclassified → Seawater1.00%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake1.00%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water1.00%
Marine Gutless Worms SymbiontHost-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001355Pelagic Microbial community sample from North Sea - COGITO 998_met_08EnvironmentalOpen in IMG/M
3300001959Mangrove swamp microbial communities from Isabella Island, Equador - GS032EnvironmentalOpen in IMG/M
3300002228Marine microbial communities from the Baltic Sea - S2t7 FKBa (104N)EnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004277Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200mEnvironmentalOpen in IMG/M
3300005433Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45BEnvironmentalOpen in IMG/M
3300005510Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006889Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius crassitunicatus.2Host-AssociatedOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007560Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02EnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300011189Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #833EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017968Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017969Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018041Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018048Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018415Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018868Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50EnvironmentalOpen in IMG/M
3300019737Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_9-10_MGEnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024192Seawater microbial communities from Monterey Bay, California, United States - 47DEnvironmentalOpen in IMG/M
3300024226Seawater microbial communities from Monterey Bay, California, United States - 81DEnvironmentalOpen in IMG/M
3300024231Seawater microbial communities from Monterey Bay, California, United States - 43DEnvironmentalOpen in IMG/M
3300024235Seawater microbial communities from Monterey Bay, California, United States - 79DEnvironmentalOpen in IMG/M
3300024236Seawater microbial communities from Monterey Bay, California, United States - 67DEnvironmentalOpen in IMG/M
3300024250Seawater microbial communities from Monterey Bay, California, United States - 58D_rEnvironmentalOpen in IMG/M
3300024281Seawater microbial communities from Monterey Bay, California, United States - 11DEnvironmentalOpen in IMG/M
3300024293Seawater microbial communities from Monterey Bay, California, United States - 63DEnvironmentalOpen in IMG/M
3300024294Seawater microbial communities from Monterey Bay, California, United States - 78DEnvironmentalOpen in IMG/M
3300024315Seawater microbial communities from Monterey Bay, California, United States - 20DEnvironmentalOpen in IMG/M
3300024318Seawater microbial communities from Monterey Bay, California, United States - 46DEnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300024359Seawater microbial communities from Monterey Bay, California, United States - 34DEnvironmentalOpen in IMG/M
3300024415Seawater microbial communities from Monterey Bay, California, United States - 76DEnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300024521 (restricted)Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025663Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025815Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025860Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300026123Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026201Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes)EnvironmentalOpen in IMG/M
3300026506Seawater microbial communities from Monterey Bay, California, United States - 4DEnvironmentalOpen in IMG/M
3300026511Seawater microbial communities from Monterey Bay, California, United States - 27DEnvironmentalOpen in IMG/M
3300026517Seawater microbial communities from Monterey Bay, California, United States - 8DEnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028129Seawater microbial communities from Monterey Bay, California, United States - 42DEnvironmentalOpen in IMG/M
3300028135Seawater microbial communities from Monterey Bay, California, United States - 7DEnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028279Seawater microbial communities from Monterey Bay, California, United States - 14DEnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300028418Seawater microbial communities from Monterey Bay, California, United States - 16DEnvironmentalOpen in IMG/M
3300028419Seawater microbial communities from Monterey Bay, California, United States - 30DEnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300034072Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-AEnvironmentalOpen in IMG/M
3300034073Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XLEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI20158J14315_10001174253300001355Pelagic MarineMTNKFLTDSKGNKSSKRLWGSILLGSGIIFSIILFSYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK*
GOS2247_102605743300001959MarineQGNKSSKRLWGSILLSIGILFSIILFGYSLYEGAADATTALGIINMFLISGGGLLGIGVFEKGIKGRNKC*
S2T7FKBa104N_128896943300002228MarineMACKFLEDSKGNKSSKRLWGSILLTIGIVFSSILFFYSLKAGAKDAATALGIINMFLISGGGLLGIGVFEKVIKK*
S2T7FKBa104N_1539802113300002228MarineMACKFLEDSKGNKSSKRLWGSILLSIGIAFSSILFFYSLKAGAKDAATALGIINMFLISGGGLLGIGVFEKAINKIDEDK*
JGI25132J35274_100577033300002483MarineMQNNYLQDSKGNKSSKRLWGSILLSIGIVFSMILFGFSLXAGXXDASTALGIINIFLIAGGSMLGIGVFEKAVKK*
JGI25132J35274_102088743300002483MarineMQNNYLQDSKGNKSSKRLWGSILLFIGIVFSMILFGFSLVTGAKDASTALGIINIFLIAGGSMLGIGVFEKAIKK*
Ga0055584_10025968223300004097Pelagic MarineMNQFLQDTTGNKSSKRLWGSILLGTGILFSSILFAYSLFKGASDASTALGIINIFLIAGGSLLGVGVFENAINKKSL*
Ga0066611_1020389213300004277MarineNKFLQDSKGNKSSKRLWGSVLLGAGIIFSTILFSYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK*
Ga0066830_1000394933300005433MarineMQNNYLQDSKGNKSSKRLWGSILLSIGIVFSMILFGFSLVAGAKDASTALGIINIFLIAGGSMLGIGVFEKAVKK*
Ga0066825_1000643753300005510MarineMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCSKD*
Ga0066825_1010881033300005510MarineMTNNFLQDCQGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGVGVFEKGINIKRRCSKD*
Ga0075474_1009955833300006025AqueousMTNNFLQDSKGNKSSKRLWGSILLATGIVFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGVGVFEKGINIKRRCSKD*
Ga0070749_1035077113300006802AqueousMENNFLHDSNGNKSSKRLWGSIILTFGILFSITLFFYSIYRGAEDSVTAMSIINMFLLSGGGLLGI
Ga0056107_10688923300006889Marine Gutless Worms SymbiontLGSILLATGIVFSTILFAYSLYRGAADAATVLGIINMLLISGGGLLGIGVFEKGINIERRCSKD*
Ga0070750_1008657423300006916AqueousMKKDFLQDSKGNKSSKRLWGSILLTFGLVFSTILFVFSLLAGAADPATAISIINIFLFAGGSLLGVGVFEKGIKHRNGK*
Ga0070750_1021304433300006916AqueousMNNYFQDSKGNKSSKRLCGSILLLLGVCFSMVLFYFSLYKNASDPITAMNLINMFLISGGSLLGIGVFEKTINKK*
Ga0070750_1039659213300006916AqueousMSHSYLRDSRGNKSSKRIWGSVILFTGLVFSVILFFYSLFKGASDAATALGIINMFLI
Ga0102913_112398123300007560EstuarineMNKIPCKFLEDFRGNKSSKRLWGSILLTTGILFSTILFFYSLNAGAKDAATALGIINTFLISGSGLLGISVFEKAIKREEDK*
Ga0075480_1062553623300008012AqueousMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCLKD*
Ga0115547_111411223300009426Pelagic MarineMKNNFLQDSNGNKSSKRLWGSLLLGIGILFSSILFACSLYKGAEDATTALGIINMFLISGGGLLGIGVFEKGIGGKNKC*
Ga0115561_125303823300009440Pelagic MarineMTNKFLQDSKGNKSSKRLWGSILLGSGIIFSTILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK*
Ga0133913_1140253533300010885Freshwater LakeMNKIPCKFLEDSRGNKSSKRLWGSILLTTGILFSAILFFYSLKTGAKDASTALGIINTFLISGSGLLGISVFEKAIKQEEGK*
Ga0136558_112639423300011189Saline LakeMTNKFLQDSKGNKSSKRLWGSILLGSGITFSIILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFE
Ga0180120_1009980723300017697Freshwater To Marine Saline GradientMTNNFLQDSKGNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCSKD
Ga0181607_1060743323300017950Salt MarshMRNNFLQDSKGNKSSKRLWGSILLSIGISFSVILFAYSLYKGAADATTALGIINMFLISGGGLLGIGVFEKGIKGKNKC
Ga0181587_1038171423300017968Salt MarshMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKKRCLKD
Ga0181585_1008943743300017969Salt MarshMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCLKD
Ga0181601_1040753123300018041Salt MarshMRNNFLQDSKGNKSSKRLWGSILLSIGISFSVILFAYSLYKGAADATTALGIINMFLISGGGLLGIGVFEKGIRGKNKC
Ga0181606_1037536013300018048Salt MarshKGNKSSKRLWGSILLGSGIIFSTILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0181559_1022267143300018415Salt MarshMTNKFLQDSKGNKSSKRLWGSILLGSGIIFSTILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFE
Ga0181558_1020698043300018417Salt MarshNKSSKRLWGSILLGSGIIFSIILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIRK
Ga0181592_1053196413300018421Salt MarshMTNNFLQGSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCLKD
Ga0181568_1058694923300018428Salt MarshMTNNFLQDCQGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRKCSKD
Ga0187844_1008585543300018868FreshwaterMNKIPCKFLEDFRGNKSSKRLWGSILLTTGILFSTILFFYSLNAGAKDAATALGIINTFLISGSGLLGISVFEKAIKREEDK
Ga0193973_104868413300019737SedimentMTNNFLQDSKGNKSSKRLWGSIILGTGILFSKILFYYSLFKGAADAATALGIINIFLISGGGLLGIGVFEKAINKK
Ga0211734_1050562943300020159FreshwaterMNKIPCKFLEDSKGNKSSKRLWGSILLTIGILFSAILFFYSLKTGAKDATTALGIINTFLISGSSLLGISVFEKAIKQE
Ga0213865_1042671023300021373SeawaterNNRLINMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRKCSKD
Ga0222718_1005854443300021958Estuarine WaterMNNYFQDSKGNKSSKRLCGSILLLLGVCFSMVLFYFSLYKNASDPITAMNLINMFLISGGSLLGIGVFEKTINKK
Ga0222719_1051451023300021964Estuarine WaterMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIRRKCSKD
Ga0228668_1000087403300024180SeawaterMNNNFLQDSKGNKSSKRLWGSILLGSGIIFSTILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0228668_1000147253300024180SeawaterMINKFLQDSKGNKSSKRLWGSILLTIGVMFSVILFVYSLYQGAADAATALGIINMFLISGGGLLGISVFEKGINIKRKCSKG
Ga0228668_100022293300024180SeawaterMTNNFLQDSKGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGVGVFEKGINIKRKCSKD
Ga0228668_100077173300024180SeawaterMTNNFLQDSKGNKSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRKCLKD
Ga0228668_100168753300024180SeawaterMNMTNNFLQDSRGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGVGVFEKGINIKRRCSKD
Ga0228668_100613243300024180SeawaterMTNNFLQDSKGNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRR
Ga0228668_101975243300024180SeawaterMTNNFLQDSKGNKSSKRLWGSILLTIGVMFSVILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0228668_102564823300024180SeawaterMTNNFLQDSKGNKSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCSKD
Ga0228637_100217563300024192SeawaterMTNNFLQDSKGNKSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLG
Ga0228637_103914123300024192SeawaterMTNNFLQDSKGNKSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGKNIKRRCSKD
Ga0228637_110041313300024192SeawaterGSIFLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRKCLKD
Ga0228667_102599333300024226SeawaterMTNNFLQDSKGNKSSKRLWGSILLTIGVMFSVILFAYSLYQGAADSATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0233399_103264813300024231SeawaterMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGI
Ga0228665_112074813300024235SeawaterKGNKSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRKCLKD
Ga0228655_102291713300024236SeawaterKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCLKD
Ga0228677_102306643300024250SeawaterMTNNFLQDSKGNKSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKE
Ga0228610_100420713300024281SeawaterINNRLTKTMTNNFLQDSKGNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRR
Ga0228610_102692423300024281SeawaterMTNKFLQDSKGNKSSKRLWGSILLGSGIIFSIILFAYSLYQGAADAATALGIINMFLIAGGSLIGIGVFEKGIKK
Ga0228610_102854423300024281SeawaterMNNNFLQDSKGNKSYKRLWGSILLGSGIIFSTILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0228651_107637223300024293SeawaterMTNNFLQDSKGNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINLKRRCLKD
Ga0228664_106027833300024294SeawaterNKSSKRLWGSILLGSGIIFSIILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0228618_102928613300024315SeawaterSKVNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRR
Ga0233400_104779113300024318SeawaterNKSSKRLWGSILLGSGIIFSIILFAYSLYQGAADAPTALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0233400_113037523300024318SeawaterMTNNFLQDSKGNKSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCLKD
Ga0228670_108986623300024319SeawaterMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGG
Ga0228628_106352513300024359SeawaterMTNNFLQDSRGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLL
Ga0228628_110529123300024359SeawaterMTNNFLQDSKGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGVGVF
Ga0228662_115429013300024415SeawaterMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYQGAADAATALGIINMFLIAGGSLLGI
(restricted) Ga0255046_1064236023300024519SeawaterMLEDSKGNTSSKRIWGSIILGLGMLLAAILFYFSIAKGAEDASTALGIINMFLIAGSSLLGIGVFEK
(restricted) Ga0255056_1017448823300024521SeawaterMNKFLQDSKGNKSSKRLWGSILLGSGILFSIILFFYSIWYKAGDAPTALGIINMFLISGGALLGVGVFEYLRKKK
Ga0209128_103313823300025131MarineMQNNYLQDSKGNKSSKRLWGSILLSIGIVFSMILFGFSLVAGAKDASTALGIINIFLIAGGSMLGIGVFEKAVKK
Ga0209645_100981143300025151MarineMQNNYLQDSKGNKSSKRLWGSILLFIGIVFSMILFGFSLVTGAKDASTALGIINIFLIAGGSMLGIGVFEKAIKK
Ga0209557_104669923300025483MarineMTNNFLQDSKGNKSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRKCSKD
Ga0209775_116890623300025663MarineMTNKFLQDSRGNKSSKRLWGSILLGSGIIFSIILFAYSLYQGAADAPTALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0208785_103799343300025815AqueousMTNNFLQDSKGNKSSKRLWGSILLATGIVFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGVGVFEKGINIKRRCSKD
Ga0209119_107189433300025860Pelagic MarineMTNKFLQDSKGNKSSKRLWGSILLGSGIIFSTILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0209223_1003711123300025876Pelagic MarineMNNNYLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGTADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0209223_1005245953300025876Pelagic MarineMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGVNIKRRCLKD
Ga0209223_1005817153300025876Pelagic MarineLFEFDLRQAPKRLWGSILLGSGIIFSIILFAYSLYQGAADAATALGIINMFLIAGGSLLGIRVFEKGIKK
Ga0209223_1007130843300025876Pelagic MarineMTNKFLQDSKGNKSSKRLWGSILLSIGIAFSVILFVYSLYEGAADASTALGIINMFLIAGGSLLGIGVFEKGIRK
Ga0209223_1015261413300025876Pelagic MarineSLLLGIGILFSSILFACSLYKGAEDATTALGIINMFLISGGGLLGIGVFEKGIGGKNKC
Ga0209534_1016481823300025880Pelagic MarineMTNKFLQDSKGNKSSKRLWGSILLTIGVMFSVILFTYSLYQGAADAPTALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0209631_10003137223300025890Pelagic MarineMTNKFLTDSKGNKSSKRLWGSILLGSGIIFSIILFSYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0209955_106278513300026123WaterMTNNFLQDSKGNKSSKRLCGSILLATGIIFSTILFAYSLYRGAADAATALVIINMFLISGGGLLEIGVFE
Ga0208127_102077733300026201MarineMTNNFLQDSKGNKSSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCSKD
Ga0208127_112392023300026201MarineMTNNFLQDCQGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGVGVFEKGINIKRRCSKD
Ga0228604_101532113300026506SeawaterSSKRLWGSILLCSGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRKCLKD
Ga0228604_107566513300026506SeawaterMNMTNNFLQDSRGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGV
Ga0233395_115478323300026511SeawaterMTNNFLQDSRGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGVGVFEKGINIKRRCSKD
Ga0228607_107889423300026517SeawaterMTNNFLQDSKGNKYSKRLWGSILLATGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRRCLKD
Ga0228674_119946613300028008SeawaterLWGSILLGSGIIFSIILFAYSLYQGAADAPTALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0228634_101545853300028129SeawaterKGNKSSKRLWGSILLGSGIIFSIILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIKK
Ga0228606_108749433300028135SeawaterRLTKTMTNNFLQDSKGNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGINIKRR
Ga0257114_100751143300028196MarineMTNKFLQDSKGNKSSKRLWGSILLGSGIIFSIILFAYSLYQGAADAATALGIINMFLIAGGSLLGIGVFEKGIRK
Ga0228613_113371113300028279SeawaterMTNNFLQDSKGNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADAATALGIINMFLISGGGLLGIGVFEKGI
Ga0228646_101810313300028280SeawaterMTNNFLQDSKGNKSSKRLWGSILLAIGIIFSTILFAYSLYRGAADVATALGIINMFLISGGGLLGIGVFEKGINIKRR
Ga0228615_102047653300028418SeawaterMNMTNNFLQDSRGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGISVFEKGINIKRKCSKG
Ga0228625_1001749103300028419SeawaterMNMTNNFLQDSRGNKSSKRLWGSILLGIGIIFSVILFAYSLYEGAADAATALGIINMFLISGGGLLGVGVFEKGINIKRRC
Ga0315274_1081652713300031999SedimentMSDYLQDANGNKSSKRLWGSILLTLGIVASAILFYYSLLIGSKDAATALGVINIFLIAGSSLLGIGVFEKAVKNDK
Ga0310127_113880_1_2373300034072Fracking WaterCKFLEDSKGNKSSKRLWGSILLTIGIAFSSILFFYSLKAGAKDAATALGIINMFLISGGGLLGIGVFEKAINKIEEDK
Ga0310130_0000237_41008_412593300034073Fracking WaterMNKNPCKFLEDSKGNKSSKRLWGSILLTIGIAFSSILFFYSLKAGAKDAATALGIINMFLISGGGLLGIGVFEKAINKIEEDK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.