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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F104744 |
| Family Type | Metagenome |
| Number of Sequences | 100 |
| Average Sequence Length | 54 residues |
| Representative Sequence | MADSQEKDLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIV |
| Number of Associated Samples | 87 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 10.00 % |
| % of genes from short scaffolds (< 2000 bps) | 9.00 % |
| Associated GOLD sequencing projects | 83 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.47 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (93.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (28.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (44.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 24.68% β-sheet: 19.48% Coil/Unstructured: 55.84% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF02245 | Pur_DNA_glyco | 38.00 |
| PF04828 | GFA | 19.00 |
| PF09084 | NMT1 | 6.00 |
| PF02604 | PhdYeFM_antitox | 2.00 |
| PF13527 | Acetyltransf_9 | 1.00 |
| PF00361 | Proton_antipo_M | 1.00 |
| PF13343 | SBP_bac_6 | 1.00 |
| PF04075 | F420H2_quin_red | 1.00 |
| PF10127 | RlaP | 1.00 |
| PF08378 | NERD | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG2094 | 3-methyladenine DNA glycosylase Mpg | Replication, recombination and repair [L] | 38.00 |
| COG3791 | Uncharacterized conserved protein | Function unknown [S] | 19.00 |
| COG0715 | ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component | Inorganic ion transport and metabolism [P] | 6.00 |
| COG4521 | ABC-type taurine transport system, periplasmic component | Inorganic ion transport and metabolism [P] | 6.00 |
| COG2161 | Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family | Defense mechanisms [V] | 2.00 |
| COG4118 | Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor | Defense mechanisms [V] | 2.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 93.00 % |
| All Organisms | root | All Organisms | 7.00 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300004114|Ga0062593_100385525 | All Organisms → cellular organisms → Bacteria | 1244 | Open in IMG/M |
| 3300004463|Ga0063356_101401734 | All Organisms → cellular organisms → Bacteria | 1029 | Open in IMG/M |
| 3300006852|Ga0075433_10183360 | All Organisms → cellular organisms → Bacteria | 1863 | Open in IMG/M |
| 3300006903|Ga0075426_10039830 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3359 | Open in IMG/M |
| 3300010399|Ga0134127_10062975 | All Organisms → cellular organisms → Bacteria | 3116 | Open in IMG/M |
| 3300010399|Ga0134127_10681652 | Not Available | 1066 | Open in IMG/M |
| 3300011414|Ga0137442_1093618 | Not Available | 652 | Open in IMG/M |
| 3300012944|Ga0137410_11109612 | Not Available | 678 | Open in IMG/M |
| 3300012958|Ga0164299_10897414 | Not Available | 643 | Open in IMG/M |
| 3300027876|Ga0209974_10128906 | All Organisms → cellular organisms → Bacteria | 901 | Open in IMG/M |
| 3300030006|Ga0299907_10200198 | All Organisms → cellular organisms → Bacteria | 1648 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 15.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 8.00% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 7.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 6.00% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 5.00% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 5.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 5.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 3.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 3.00% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 3.00% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 2.00% |
| Groundwater Sand | Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand | 2.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 2.00% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 1.00% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 1.00% |
| Terrestrial | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial | 1.00% |
| Unplanted Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil | 1.00% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.00% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 1.00% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 1.00% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 1.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.00% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.00% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.00% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 1.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.00% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 1.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000363 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000559 | Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly | Environmental | Open in IMG/M |
| 3300000787 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300004480 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 | Environmental | Open in IMG/M |
| 3300004643 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3 | Environmental | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
| 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
| 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Host-Associated | Open in IMG/M |
| 3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
| 3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
| 3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
| 3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
| 3300006853 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4 | Host-Associated | Open in IMG/M |
| 3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300006969 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 | Host-Associated | Open in IMG/M |
| 3300007004 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost | Environmental | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009157 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 | Environmental | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009804 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 | Environmental | Open in IMG/M |
| 3300009817 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 | Environmental | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300010329 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300011414 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2 | Environmental | Open in IMG/M |
| 3300011439 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2 | Environmental | Open in IMG/M |
| 3300012021 | Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1 | Environmental | Open in IMG/M |
| 3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
| 3300012354 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012355 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG | Environmental | Open in IMG/M |
| 3300012360 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG | Environmental | Open in IMG/M |
| 3300012479 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610 | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012948 | Tropical forest soil microbial communities from Panama - MetaG Plot_14 | Environmental | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300012972 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014263 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1 | Environmental | Open in IMG/M |
| 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
| 3300015358 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300017966 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG | Environmental | Open in IMG/M |
| 3300018052 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2 | Environmental | Open in IMG/M |
| 3300018072 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2 | Environmental | Open in IMG/M |
| 3300018075 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1 | Environmental | Open in IMG/M |
| 3300018078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex | Environmental | Open in IMG/M |
| 3300018081 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1 | Environmental | Open in IMG/M |
| 3300021073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo | Environmental | Open in IMG/M |
| 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026325 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes) | Environmental | Open in IMG/M |
| 3300026537 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes) | Environmental | Open in IMG/M |
| 3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027876 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027909 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300030006 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 | Environmental | Open in IMG/M |
| 3300031847 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300033475 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC | Environmental | Open in IMG/M |
| 3300034150 | Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| ICChiseqgaiiFebDRAFT_110142141 | 3300000363 | Soil | MADQPDNDIDKLVANRLREAGLKFAREKAIGGLAPDFIVYAPDGRQFI |
| F14TC_1001327151 | 3300000559 | Soil | MSNQPEKDYEELIADQLREAGIKFATEKAIAGLAPDFIVYAPDG |
| F14TC_1001327802 | 3300000559 | Soil | MSNQPEKDYEELIADQLREAGIKFATEKAIAGLAPDFIVYAP |
| JGI11643J11755_117074411 | 3300000787 | Soil | MADRNDNDIDQLVADRLREAGLKFATEKAIGGLAPDFIVYAPDGRQFIVETRLWDFPGQ |
| JGI1027J12803_1007327512 | 3300000955 | Soil | MSNQPEKDYEQVIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTTEASRQA |
| JGI10216J12902_1001731493 | 3300000956 | Soil | MSNQPEKDYEELIAEQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTTEASRQAQNYQ |
| Ga0062593_1003855251 | 3300004114 | Soil | MAVQEKELEEIIAERLREAGLKFATERAIGGLAPDFIVYAPDGRQFVVETRNWDF |
| Ga0062589_1002357043 | 3300004156 | Soil | MAERPQDEIEKLIADKLSDAGIKFVTQQAIAGLAADFIVYAPDGRQFIVEAKNWDFPGLKAEASRQ |
| Ga0063356_1014017341 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MADPDDNDIDKLVANRLREAGLKFATEKAIGGLAPDFIVYAPDGRQFIVETRLWDF |
| Ga0063356_1030911152 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MADSQDKNLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIV |
| Ga0062592_1019058931 | 3300004480 | Soil | MADSQDKNLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGR |
| Ga0062591_1005173292 | 3300004643 | Soil | MAGSDDKDLEDIVAARLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLTTEAS |
| Ga0065705_101945703 | 3300005294 | Switchgrass Rhizosphere | MSNQPEKDYEELIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTTEASRQAQNYQ |
| Ga0070659_1009302881 | 3300005366 | Corn Rhizosphere | MADSQDKDLEHIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLT |
| Ga0070698_1009959232 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MAEQSEKEIEEIIADRLREAGLKFVTEKAIGGLAPDFIVYGPDGRQFIVE |
| Ga0070684_1002985484 | 3300005535 | Corn Rhizosphere | MARSDDKDLEDIVAARLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDF |
| Ga0068852_1010833431 | 3300005616 | Corn Rhizosphere | MPGSDDKDLEDIVAARLREAGLKFATERAVGGLAPDFVV |
| Ga0068863_1026589231 | 3300005841 | Switchgrass Rhizosphere | MAAARRERRQTMAESQEKELEEVIAERLREAGLKFATERAIGGLAPDFIVYAPDGRQF |
| Ga0068858_1002566821 | 3300005842 | Switchgrass Rhizosphere | MAGSDDKDLEDIVAARLREAGLKFATERAVGGLAPDFVVYAPDGRQFI |
| Ga0068860_1018454801 | 3300005843 | Switchgrass Rhizosphere | MAGSDDKDLEDIVAARLREAGLKFATERAVGGLAPDFVVYAP |
| Ga0081455_108040671 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MSEQPEKDYEELIAEQLREAGIKFATEKAIAGLAPDFIVYAPDG |
| Ga0075417_100908221 | 3300006049 | Populus Rhizosphere | MAEQSEKEIEEIIADRLREAGLKFVREKAIGGLAPDFIVYGPDGRQFIVEARSWDFPGLTTEASRQAQF |
| Ga0075417_104073862 | 3300006049 | Populus Rhizosphere | MAEQSEKEIEEIIADRLREAGLKFVTEKAIGGLAPDFIVYGPDG |
| Ga0079221_100412294 | 3300006804 | Agricultural Soil | MADSQEKDLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLTAEASRQA |
| Ga0079221_112249952 | 3300006804 | Agricultural Soil | MADSQEKDLEDIVAERLREAGLKFATGRAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLTAEASRQA |
| Ga0075428_1003781381 | 3300006844 | Populus Rhizosphere | MSNQPEKDYEELIADQLREAGIKFATEKAIAGLAP |
| Ga0075433_101833601 | 3300006852 | Populus Rhizosphere | MAESQEQELEEVIAERLREAGFKFATERAIGGLAPDFIVYAPDGRQFVVETRNWDFPGLT |
| Ga0075420_1002008854 | 3300006853 | Populus Rhizosphere | MSNQPEKDYEKLIADQLSEAGIRFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDF |
| Ga0075426_100398306 | 3300006903 | Populus Rhizosphere | MAESQEKELEEIIAERLREAGLKFATERAIGGLAPDFIVYAPDGRQFVVETRNWDFPGL |
| Ga0075424_1000374599 | 3300006904 | Populus Rhizosphere | MADSQDKDLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWD |
| Ga0079219_121219041 | 3300006954 | Agricultural Soil | MADSQEKNLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIV |
| Ga0079219_121716021 | 3300006954 | Agricultural Soil | MADSQEKDLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIV |
| Ga0075419_104293733 | 3300006969 | Populus Rhizosphere | MSNQPEKDYEKLIADQLSEAGIKFATEKAIAGLAPDFIVYAP |
| Ga0079218_135853731 | 3300007004 | Agricultural Soil | MAERPQDEIEKLIADKLCDAGIKFVTQQAIAGLAPDFIVYAPDGRQFIVEAKNWDFPGFKAEASRQAQH |
| Ga0075418_106354413 | 3300009100 | Populus Rhizosphere | MSNQPEKDYEELIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFI |
| Ga0066709_1016405752 | 3300009137 | Grasslands Soil | MSNQPEKDYEKLIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWISRG* |
| Ga0114129_107135503 | 3300009147 | Populus Rhizosphere | MAERQQDEVEKLIADKLRDAGIKFVTQQAIGGLAPDFIVY |
| Ga0114129_116631391 | 3300009147 | Populus Rhizosphere | MANSQDKELEEIVAERLREAGLKFATERAVGGLAPDF |
| Ga0105092_109367901 | 3300009157 | Freshwater Sediment | MSNQPEKDYEELIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTTEASRQAQNYQD |
| Ga0105248_112164171 | 3300009177 | Switchgrass Rhizosphere | MAGSDDKDLEDIVAARLREAGLKFATERAVGGLAPDFV |
| Ga0105063_10608411 | 3300009804 | Groundwater Sand | MSNQPEKDYEKLIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPG |
| Ga0105062_10075712 | 3300009817 | Groundwater Sand | MSNQPEKDYEKLIADQLREAGIEFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDF |
| Ga0126380_107725291 | 3300010043 | Tropical Forest Soil | MSNQLEKDYEELIAEQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTTE |
| Ga0126380_118540771 | 3300010043 | Tropical Forest Soil | MSKEPEKDYEELIAEQLREAGIKFVTEKAIAGLAPDFIVY |
| Ga0126384_103799313 | 3300010046 | Tropical Forest Soil | MSKQPEKDYEEVIAEQLREAGIKFVTEKAIAGLAPDFIVYAPDGR |
| Ga0134111_100334453 | 3300010329 | Grasslands Soil | MSDQEKDFERFIADQLREAGMKFATQKALAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTTEASSRRSIIRKL* |
| Ga0126376_121356672 | 3300010359 | Tropical Forest Soil | MSKQPEKDYEEVIAEQLREAGIKFVTEKAIAGLAPDF |
| Ga0126378_101203722 | 3300010361 | Tropical Forest Soil | MADSEEKDLEDIVAERLREAGLKFATERAVGGLAPDFIVYGPDERRFIVQTRN* |
| Ga0126377_109975882 | 3300010362 | Tropical Forest Soil | MSKQPEKDYEEVIAEQLREAGIKFVTEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTTEAS |
| Ga0134125_100153351 | 3300010371 | Terrestrial Soil | MPGSDDKDLEDIVAARLHEAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLTTEAS |
| Ga0134128_110108031 | 3300010373 | Terrestrial Soil | MADSQDKDLEHIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPG |
| Ga0134127_100629751 | 3300010399 | Terrestrial Soil | MADQAEKDIDKIVAERLREAGFKFATEKAIGGLAPDFIVYAPDGRQFIVETRRWDFPGLTAEASRQ |
| Ga0134127_106816521 | 3300010399 | Terrestrial Soil | MADRNDNDIDQLVADRLREAGLKFATEKAIGGLAPDFIVYAPDGRQ |
| Ga0134122_104791743 | 3300010400 | Terrestrial Soil | MADSQDKNLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPD |
| Ga0137442_10936182 | 3300011414 | Soil | MADQTEQDIDKIVAARLREAGLKFATEKAIGGLAPDFIVYAPDG |
| Ga0137432_10323071 | 3300011439 | Soil | MSDLPEKDYEELIAEQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTTEASRQ |
| Ga0120192_100503831 | 3300012021 | Terrestrial | MAESQENELEEIIAERLREAGLKFATERAIGGLAPDFIVYAPDGR |
| Ga0137387_104913311 | 3300012349 | Vadose Zone Soil | MSDQEKDFERFIADQLREAGMKFATQKALAGLAPDFIVYAPDGR |
| Ga0137366_104214181 | 3300012354 | Vadose Zone Soil | MAEQSEKEIEEIIADRLREAGLKFVTEKAIGGLAPDFIVYGPD |
| Ga0137369_100689196 | 3300012355 | Vadose Zone Soil | MAEQSEKEIEEIVADRLREAGLKFVTEKAIGGLAPDFIVFAPDGRRFIVEARSWDFPGLTTE |
| Ga0137369_100692735 | 3300012355 | Vadose Zone Soil | MAEQTEKEIDEIIADRLREAGFKFVTEKAIGGLAPDLIVFAPDGRRFIVEA |
| Ga0137375_106835501 | 3300012360 | Vadose Zone Soil | MAEQSEKEIEEIIADRLREAGLKFVTEKAIGGLAPDFI |
| Ga0157348_10300702 | 3300012479 | Unplanted Soil | MADSQDKDLEDIVAERLREAGLKFATERAVGGLAPDFVVYAP |
| Ga0137407_118116071 | 3300012930 | Vadose Zone Soil | MSDQEKDFERFIADQLREAGMKFATQKALAGLAPDFIVYAPDGRQFIVEVKNWDFPG |
| Ga0137410_111096121 | 3300012944 | Vadose Zone Soil | MAAARRERRQTMAESQEKELEEVIAERLREAGLKFATERAIGGLAPDFIVYAPDGRQFVVET |
| Ga0126375_104343813 | 3300012948 | Tropical Forest Soil | MSEQPEKDYEELIAEQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLT |
| Ga0126375_114112151 | 3300012948 | Tropical Forest Soil | MSNQLEKDYEELIAEQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLT |
| Ga0164299_108974142 | 3300012958 | Soil | MAESQEKELEEVIAERLREAGLKFATERAIGGLAPHFIVYAPDGRQFVVETRNWDFPGL |
| Ga0134077_104642282 | 3300012972 | Grasslands Soil | MAEQSEKEIEEIIADRLREADLKFVTEKAIGGLAPDFIVFAPDGRRFIVEARSWDFPGLTTEASRQAQFY |
| Ga0157378_125444302 | 3300013297 | Miscanthus Rhizosphere | MADSQDKNLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVET |
| Ga0075324_11343042 | 3300014263 | Natural And Restored Wetlands | MADQPDNDIDKLVANRLRAAGLKFAREKAIGGLAPDFIVYAPDGRQFIVETRR |
| Ga0157376_127954722 | 3300014969 | Miscanthus Rhizosphere | MADSQDKNLEDIVAARLREAGLKFATERAVGGLAP |
| Ga0134089_102078311 | 3300015358 | Grasslands Soil | MAENSEKEIEEIIADRLREADLKFVTEKAIGGLAPDFIVFAPDGRRFIVEARSWDFP |
| Ga0132257_1023045102 | 3300015373 | Arabidopsis Rhizosphere | MADSQEKDLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLTAEASRQ |
| Ga0132255_1046448122 | 3300015374 | Arabidopsis Rhizosphere | MADSQDKDLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLTTE |
| Ga0132255_1058880962 | 3300015374 | Arabidopsis Rhizosphere | MPGSDDKDLEDIVAARLREAGLKFATERAVGGLAPDFVVYAPDGRQ |
| Ga0182041_103636351 | 3300016294 | Soil | MSNQPEKDYEQVIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKN |
| Ga0187776_110124512 | 3300017966 | Tropical Peatland | MTDEEKDFEKIIAEQLRDAGIKFATQKALAGLAPDFIVYAPDGRQFIVEVKDWDFPGLTT |
| Ga0184638_10407374 | 3300018052 | Groundwater Sediment | VSNQPEKDYEKLIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFI |
| Ga0184635_102505531 | 3300018072 | Groundwater Sediment | MSNQPEKDYEKLIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWD |
| Ga0184632_100885653 | 3300018075 | Groundwater Sediment | MSNQPEKDYEKLIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIV |
| Ga0184612_106295931 | 3300018078 | Groundwater Sediment | MSNQPEKDYEKLIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVEVKNWDFPGLT |
| Ga0184625_100767101 | 3300018081 | Groundwater Sediment | MSNQPEKDYEKLIADQLREAGIKFATEKAIAGLAPDFIVYAPDGRQFIVE |
| Ga0210378_100077341 | 3300021073 | Groundwater Sediment | MADQTEEEIETIIADRLREAGLRFETERAVGGLAPDFIVYAPDGRRFIVETRSWDFPGQTTEASRQAHHY |
| Ga0207654_102744861 | 3300025911 | Corn Rhizosphere | MADSQDKDLEHIVAERLREAGLKFATERAVGGLAPDFVVY |
| Ga0207690_118369262 | 3300025932 | Corn Rhizosphere | MADSQDKDLEHIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLTTEASRQAQHYQ |
| Ga0207670_112191512 | 3300025936 | Switchgrass Rhizosphere | MADSQDKNLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETK |
| Ga0209152_103962571 | 3300026325 | Soil | MSDQEKDFERFIADQLREAGMKFATQKALAGLAPDFIVYAPDGRQFIVEVKNWDFPGLTT |
| Ga0209157_12119582 | 3300026537 | Soil | MAENSEKEIEEIIADRLREADLKFVTEKAIGGLAPDFIVFAPDGRRFIV |
| Ga0209814_101931833 | 3300027873 | Populus Rhizosphere | MAENSEKEIEEIIADRLREAGLKFVTEKAIGGLAPDFIVY |
| Ga0209814_102057851 | 3300027873 | Populus Rhizosphere | MAEQSEKEIEEIIADRLREAGLKFVTEKAIGGLAPDFIVY |
| Ga0209974_101289061 | 3300027876 | Arabidopsis Thaliana Rhizosphere | MAGQPDNDIDKLVADRLREAGLKFATEKAIGGLAPDFIVYAPDGRQFIVETRRWDF |
| Ga0209382_110472502 | 3300027909 | Populus Rhizosphere | MSNQPEKDYEKLIADQLSEAGIRFATEKAIAGLAPDFIVY |
| Ga0209382_120626642 | 3300027909 | Populus Rhizosphere | MAEQSEKEIEEIIADRLREAGLKFVREKAIGGLAPDFIVYGPDGRQFIVEARSWDFPGLTTEAS |
| Ga0299907_102001983 | 3300030006 | Soil | MADHAGNDIDKIVAERLREAGLKFATEKAIGGLAPDFIVYAPDGRQFIVETRRWNFPGLNDGS |
| Ga0310907_100829431 | 3300031847 | Soil | MADSQDKNLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLTAEASR |
| Ga0306926_109005411 | 3300031954 | Soil | MAESQEKEVEEIVAERLREAGLEFATERAVGGLAPDFIVYA |
| Ga0307471_1003699921 | 3300032180 | Hardwood Forest Soil | MAAARRERRQTMAESQEKELEEVIAERLREAGLKFATERAIGGLAPDFIVYAPDGRQFVVETRNWDF |
| Ga0310811_101880201 | 3300033475 | Soil | MADSQDKDLEDIVAERLREAGLKFATERAVGGLAPDFVVYAPDGRQFIVETKNWDFPGLT |
| Ga0364933_040776_3_209 | 3300034150 | Sediment | MAESQEKELEEVIAERLREAGLKFATERAIGGLAPDFIVYAPDGRQFVVETRNWDFPGLTTEASRQAQH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |