Basic Information | |
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Family ID | F104739 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 51 residues |
Representative Sequence | MNWNAELTVCFVSTSVVNVAFAASYHLPAAASPPTSCAAATISKFLSFSSA |
Number of Associated Samples | 93 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 6.06 % |
% of genes near scaffold ends (potentially truncated) | 31.00 % |
% of genes from short scaffolds (< 2000 bps) | 88.00 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.38 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (99.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (45.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (54.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 48.10% β-sheet: 0.00% Coil/Unstructured: 51.90% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.38 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Watersheds Sediment Freshwater Sediment Peatland Groundwater Polar Desert Sand Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Glacier Forefield Soil Grasslands Soil Surface Soil Soil Soil Agricultural Soil Soil Grass Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Arabidopsis Rhizosphere Avena Fatua Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
E4A_08813190 | 2170459003 | Grass Soil | MNWNAELTVCFVSTSVVNVAFAASYHLPAAASPPTSCAAATISKFLSFSSA |
Ga0062595_1009492471 | 3300004479 | Soil | ELIVCFVSTSAVNVAPAASYHWPAAASPPVSCAAATISKFWSFSSP* |
Ga0066671_106645941 | 3300005184 | Soil | QTPIGTLMNWKFELTVCWRSISVVNVAFAASYHLPAAASPPVSCAAATISKLLPFSS* |
Ga0070676_102980483 | 3300005328 | Miscanthus Rhizosphere | LINWNAELTVCEVSTSVVKVAFAASYHLPAAASPPVSCAAAMISKFRSFSSA* |
Ga0070670_1010236202 | 3300005331 | Switchgrass Rhizosphere | SSIQMPIGTLINWNAELMACVVSTSVVKVAFAASYHLPAAASPPVSCAAEMISKFRSFSSA* |
Ga0070670_1016734721 | 3300005331 | Switchgrass Rhizosphere | QTPDGTFTNWNAELTLWRVSSSCVNVACAASYHLPASASPPMSWAAATISKFFPLSSS* |
Ga0068869_1006122462 | 3300005334 | Miscanthus Rhizosphere | MNWKTELTVCLVSTSCVNVAFAASYHLPAAASPPTSCAAAMSSKFSSFSSA* |
Ga0068868_1004019653 | 3300005338 | Miscanthus Rhizosphere | IQIPIGTLMNWYAELTPCFASISVVYVAFAASYHLPAAASPPTSCAAAMSSKFSSFSSA* |
Ga0070669_1005359912 | 3300005353 | Switchgrass Rhizosphere | LINWNAELTVWVASTSVVNVAFAASYHLPAAGSPPVSCATAMISKFLSFSSA* |
Ga0070675_1006425732 | 3300005354 | Miscanthus Rhizosphere | LINWNAELMACVVSTSVVKVAFAASYHLPAAASPPVSCAAAMISKFRSFSSA* |
Ga0070698_1008934192 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | LANWNAELTAWFASTSVVNVALAASYHGPAAASPPVSCAAATISRFACFSSL* |
Ga0070699_1018896892 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | AELTACVVSTSVVNVAFAASYHLPAAASPPTSCAAATIPKFLSLSSS* |
Ga0070741_101168682 | 3300005529 | Surface Soil | MNWNAELTAWRTSMSVVNVAFAASYHLPAACSPAVSWAAATISKPRGFSSS* |
Ga0070672_1001365372 | 3300005543 | Miscanthus Rhizosphere | MPIGTLIKWNAELTACVVSISVVKAAFAASYHLPAAASPPVSCAAAMISKFRSFSSA* |
Ga0066903_1002794213 | 3300005764 | Tropical Forest Soil | MNWNAELIAWFASTSVVNVALAASYHRPAAASPPVSCATATISKFASFSSL* |
Ga0068870_112527592 | 3300005840 | Miscanthus Rhizosphere | MPIGTLINWNAELMACVVSTSVVKVAFAASYHLPAAASPPVSCAAEMISKFRSFSSA* |
Ga0075024_1001093512 | 3300006047 | Watersheds | MNWNTELTVCLVSTSVVNVAFAASYHFPAAASPPTSCAAATISKLRSFSSA* |
Ga0075417_101212442 | 3300006049 | Populus Rhizosphere | LTNWNAELTAWVASTSVVNVALAASYHFPAAASPPVSCAAATISKFLSFSSL* |
Ga0079221_103206352 | 3300006804 | Agricultural Soil | MNWYAVLTACWASISVVYVAFAASYHLPAAASPPVSCAAAMISKF* |
Ga0075428_1004593561 | 3300006844 | Populus Rhizosphere | LLNWNAELTVWLASTSVVNVALAASYHFPAAASPPVSCAAATISKFASFSSV* |
Ga0075436_1001325341 | 3300006914 | Populus Rhizosphere | NAELTAWLASTSVVKVALAASYQRPAAASPPVSCAAATISKFLSFSSV* |
Ga0079218_122897992 | 3300007004 | Agricultural Soil | STQTPVGTLVNWNAELTACAGSISVVYVALAASYHLPAAASPPVSCAAAMISKFLPFSSS |
Ga0075435_1006457031 | 3300007076 | Populus Rhizosphere | MNWYAVLTACWVSISVEYVAFAASYHLPAAASPPVSCAAAMISKF* |
Ga0099791_104402362 | 3300007255 | Vadose Zone Soil | MNCKTELTVCFASTSVVNVAFAASYHLPAAASPPVSCAAATISKLLSFSSA* |
Ga0099830_101526972 | 3300009088 | Vadose Zone Soil | LTNWNAELTVCFASTSAVKVAFAASYHLPAAASPPVSCAAAMISKFLSFSSV* |
Ga0099827_101308613 | 3300009090 | Vadose Zone Soil | MNWNAELTVCFASTSAVKVAFAASYHLPAAASPPVSCAAAMISKFLSFSSV* |
Ga0105240_104150702 | 3300009093 | Corn Rhizosphere | MNWNTELTVCLVSTSVVNVAFAASYHLPAAASPPTSCAAAISSKFLSFSSA* |
Ga0075418_108766842 | 3300009100 | Populus Rhizosphere | LLNWNAELTAWLASTSVVNVALAASYHFPAAASPPVSCAAATISKFASFSSL* |
Ga0105247_113056721 | 3300009101 | Switchgrass Rhizosphere | TVCRVSISCVNVASAASYQRPAAASPPTSCAAAMISMFLSFSSL* |
Ga0105242_114228222 | 3300009176 | Miscanthus Rhizosphere | ELIVCFVSTSAVNVAPAASYHWPAAASPPVSCAAAIISKFRSFSSA* |
Ga0105249_111132682 | 3300009553 | Switchgrass Rhizosphere | MPIGTLINWNAELTVWVASTSVVNVAFAASYHLPAAGSPPVSCATEMISKFLSFSSA* |
Ga0116135_12994672 | 3300009665 | Peatland | MPIGTLMNWYAVLTLCWASISVVKVAFAASYHFPAAASPPVSCAAAIISKFWSCSSV* |
Ga0126384_105097651 | 3300010046 | Tropical Forest Soil | TLMNWYAELTACCVSIKVVKVAFAASYHLPAAASPPVSCAAATISKF* |
Ga0126376_108049493 | 3300010359 | Tropical Forest Soil | MPIGTLMNWYAELTACCVSIKVVKVAFAASYHLPAAASPPVSCAAATISKF* |
Ga0126379_115050932 | 3300010366 | Tropical Forest Soil | MNWKAELTACCVSISVVNVALAASYHLPAAASPPVSWAAATISKFWSCSSV* |
Ga0126381_1029913372 | 3300010376 | Tropical Forest Soil | WKAELTACCVSISVVNVALAASYDLPAAASPPVSWAAATISKFWSCSSV* |
Ga0136847_116811143 | 3300010391 | Freshwater Sediment | LTNWNTELTVCFVSTSVVNVAFAASYHLPAAASPPVSSAAATISKFLSFSSS* |
Ga0126383_107983262 | 3300010398 | Tropical Forest Soil | MGTLMNWYAELTACCVSIKVVKVALAASYHLPAAASPPVSCAAATISKF* |
Ga0126383_116377302 | 3300010398 | Tropical Forest Soil | MPIGTLMNWKAELTACCVSISVVNVALAASYHLPAAASPPVSWAAATISKFWSCSSV* |
Ga0134122_101444854 | 3300010400 | Terrestrial Soil | VCLVSISVVNVAFAASYHLPAAASPPTSCAASMISKFVLLSSA* |
Ga0134122_105497402 | 3300010400 | Terrestrial Soil | MNWKSELTVCFTSTSVVNVALAASYHLPAAASPPVSCAAAMISKFRPFSSA* |
Ga0134122_130951482 | 3300010400 | Terrestrial Soil | LTNWNVELTACCRSISVVKVALAASYHLPAAASPPVSCAAATISKLRAFSSW* |
Ga0134121_101162124 | 3300010401 | Terrestrial Soil | LTNWNTELTVCVASTRVVNVALAASYHLPAAASPPVSCAAATISKFLSFSSL* |
Ga0136638_105180772 | 3300012094 | Polar Desert Sand | VNWNAELTACFASTNVVYVARATSYHFPAAVSPAVSWAAAMISKLLLFSSS* |
Ga0137388_106979942 | 3300012189 | Vadose Zone Soil | LTNWNAELTVCFASTSAVKVAFAASYHLPAAASPPVSCAAAMISKFPSFSSV* |
Ga0150985_1152714782 | 3300012212 | Avena Fatua Rhizosphere | MNWYSELMVCFVSTSCVNVAFAASYHLPAAASPPVSCAAAMSSKF* |
Ga0137368_101974903 | 3300012358 | Vadose Zone Soil | MNWNAELIACFASTSVVNVAFAVSYHLPAAASPPVSWAAATIAKFRSLSSS* |
Ga0137375_106813222 | 3300012360 | Vadose Zone Soil | MNWNAELIACFASTSVVNVAFAVSYHLPAAASPPVSSAAATISKFRSLSSS* |
Ga0157299_103593112 | 3300012899 | Soil | LIKWNAELTACVVSISVVKAAFAASYHLPAAASPPVSCAAAMISKFRSFSSA* |
Ga0157290_103568302 | 3300012909 | Soil | ELTACVVSTSVVYVAFAASYHLPAAASPPVSCAAAMISKFLPFSSS* |
Ga0137394_108667621 | 3300012922 | Vadose Zone Soil | LRSWNAELTLCVASTSVVNVAFAASYHLPAAASPPVSCAAATISKLLSFSSA* |
Ga0137404_121673492 | 3300012929 | Vadose Zone Soil | MNWKTELTVCLVSTSCVKVAFAASYHLPAAASPPTSCAAAMISKFLSFSSA* |
Ga0137410_121187562 | 3300012944 | Vadose Zone Soil | LCVASTSVVNVAFAASYHLPAAASPPVSCAAATISKLLSFSSA* |
Ga0126375_118650781 | 3300012948 | Tropical Forest Soil | NAELTAWLVSTSVVYVAFAASYHLPAAASPPVSCAAATISKFLSLSSL* |
Ga0164301_111712292 | 3300012960 | Soil | VCLASTSVVNAAFAASYHLPAAASPPVSCAAAMISKFLSFSSA* |
Ga0164304_115645822 | 3300012986 | Soil | WNVELTACCRSISVVKVALAASYHLPAAASPPVSCAAATISKLRAFSC* |
Ga0157378_120813982 | 3300013297 | Miscanthus Rhizosphere | MPIGTLINWNTELTVCVVSTSVVKVAFAASYHLPAAASPPVSCAAAMISKFRSFSSA* |
Ga0163162_123677732 | 3300013306 | Switchgrass Rhizosphere | MPIGTLINWNAELTVWVASTSVVNVAFAASYHLPAAASPPTSCAAATISKFLSFSSA* |
Ga0157375_105083893 | 3300013308 | Miscanthus Rhizosphere | MPIGTLINWNAELTVWVASTSVVKVAFAASYHLPAAASPPVSCAAAMISKSLSFSSA* |
Ga0134081_102931312 | 3300014150 | Grasslands Soil | NTELTVCFASTSVVKVAFAASYHWPAAASPPVSCAAAISSKFLSFSSA* |
Ga0137411_13571714 | 3300015052 | Vadose Zone Soil | MPAGTLINWNAELTVCLVSTSVVNVAFAASYHLPAAAHRATSWAAATISKFLSLSSS* |
Ga0167652_10402772 | 3300015164 | Glacier Forefield Soil | MNWNTELTVCFVSTSVVNVAFAASYHLPAAASPPVSWAAAMISKFRSFSSA* |
Ga0167648_10527262 | 3300015171 | Glacier Forefield Soil | MNWNTELTVCFVSTSVVNVALAASYHLPAAASPPTSCAAATISKFLSFSSS* |
Ga0137403_106492482 | 3300015264 | Vadose Zone Soil | MNWKTELTVCLVSTSCVNVAFAASYHLPAAASPPTSCAAAMISKFLSFSSA* |
Ga0132258_122803661 | 3300015371 | Arabidopsis Rhizosphere | ELTVCRVSISCVNVALAASYQRPAAASPPTSCAAAMISMFLSFSSL* |
Ga0132256_1032029521 | 3300015372 | Arabidopsis Rhizosphere | NAELTAWFASTSVVYVAFAASYHLPAAASPPVSCAAATISKFLSFSSV* |
Ga0132257_10000546911 | 3300015373 | Arabidopsis Rhizosphere | WNAELTACFASTSVVKVAFAASYHLPAAASPPVSCATATISKFLPFSSS* |
Ga0190274_107982682 | 3300018476 | Soil | MNWKTELTVCLVSTSCVNVAFAASYHLPAAASPPTSCAAAMISKFLSFSSV |
Ga0193728_10963942 | 3300019890 | Soil | MNWKTELTVCFVSTSCVNVAFAASYHLPAAASPPTSCAAAMISKFWSFSSA |
Ga0210378_100995142 | 3300021073 | Groundwater Sediment | MNWKTELTVCFVSTSVVNVALAASYHLPAAASPPVSCAAAMISKFWSFSSA |
Ga0213853_110265242 | 3300021861 | Watersheds | MNWKTELTVCLVSTSWVNAAFAASYHLPAAASPPTSWAAAMISKFLFFSSA |
Ga0247802_10650492 | 3300023077 | Soil | MPIGTLIKWNAELTACVVSISVVKAAFAASYHLPAAASPPVSCAAAMISKFRSFSSA |
Ga0179591_10689503 | 3300024347 | Vadose Zone Soil | MNWKTELTVCLVSTSCVNVAFAASYHLPAAASPPTSCAAAMISKFLSFSSA |
Ga0179591_11820412 | 3300024347 | Vadose Zone Soil | MNWNSELTVCFVSTSCVNVAFAASYHLPAAASPPTSCAAAMISKLRSFSSA |
Ga0207645_111620012 | 3300025907 | Miscanthus Rhizosphere | LINWNAELTVCEVSTSVVKVAFAASYHLPAAASPPVSCAAAMISKFRSFSSA |
Ga0207643_101143121 | 3300025908 | Miscanthus Rhizosphere | NAELTACVVSTSVVKVAFAASYHFPAAASPPVSCAAATISKFRSFSSA |
Ga0207646_114044461 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | TVCFGSTSVVNVAFAASYHFPAAASPPESCAAATISKFLSFSSS |
Ga0207681_113245442 | 3300025923 | Switchgrass Rhizosphere | ELTVWVASTSVVNVAFAASYHLPAAGSPPVSCATAMISKFLSFSSA |
Ga0207650_108262501 | 3300025925 | Switchgrass Rhizosphere | INWNAELMACVVSTSVVKVAFAASYHLPAAASPPVSCAAATISKFRSFSSA |
Ga0207687_105917892 | 3300025927 | Miscanthus Rhizosphere | MNWKTELTVCLVSTSCVNVAFAASYHLPAAASPPTSCAAAMSSKFLSFSSA |
Ga0207701_103722382 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MPVGTFTNWNRELTVWFASTSVVKVALAASYHLPAAASPPVSCAAAMISKFRDLSSV |
Ga0207712_101213054 | 3300025961 | Switchgrass Rhizosphere | LINWNAELTVWVASTSVVNVAFAASYHLPAAGSPPVSCATEMISKFLSFSSA |
Ga0207658_105311222 | 3300025986 | Switchgrass Rhizosphere | LINWNAELTACVVSTSVVKVAFAASYHLPAAASPPVSCAAATISKFRSFSSA |
Ga0207677_103294171 | 3300026023 | Miscanthus Rhizosphere | TPIGTLMNWKTELTVCLVSTNCVNVAFAASYHLPAAASPPTSCAAAMSSKFSSFSSA |
Ga0207703_113204472 | 3300026035 | Switchgrass Rhizosphere | MNWKTELTVCLVSTSCVNVAFAASYHLPAAASPPTSCAAAMSSKFSSFSSA |
Ga0207676_113314732 | 3300026095 | Switchgrass Rhizosphere | LINWNAELTLCKVSTSVVKVAFAASYHLPAAASPPVSCAAAMISKFRSFSSA |
Ga0209515_100179072 | 3300027835 | Groundwater | MHWNTELTECVVSTSVVNVAFAASYHVPAAASPPTSCAAATISKFLSFSSA |
Ga0209283_109270462 | 3300027875 | Vadose Zone Soil | LTNWNAELTVCFASTSAVKVAFAASYHLPAAASPPVSCAAAMISKFLSFSSV |
Ga0209069_101953452 | 3300027915 | Watersheds | MNWNTELTVCLVSTSVVNVAFAASYHFPAAASPPTSCAAATISKLRSFSSA |
Ga0209069_106046202 | 3300027915 | Watersheds | MNWKSELISCFASTSVVNVAFAASYHLPAAASPPVSCAAETISKFLSFSSP |
Ga0307284_103964192 | 3300028799 | Soil | TPIGTLANWNTELTVCFVSTSVVNVAPAASYHLPAAASPPMSCAAATISKWWPLSSA |
Ga0307503_108596632 | 3300028802 | Soil | IQMPVGTLISWNAELTACVVSTSVVKVAFAASYHLPAAASPPVSCAAAMISKFRSFSSA |
Ga0307312_106615372 | 3300028828 | Soil | LINWNAELTACVVSTSVVKVALAASYHLPAAASPPVSCAAAMISKFRSFSSA |
Ga0307506_101941982 | 3300031366 | Soil | MNWNSELTVCFVSTSCVNVAFAASYHLPAAASPPTSCAAAMISKFWPFSSA |
Ga0310888_109749422 | 3300031538 | Soil | LTVWFVSTSVVKVALAASYHLPAAASPPVSCAAAMISKFRDFSSV |
Ga0310813_110650561 | 3300031716 | Soil | PASSIQMPVGTLINWNAELTACVVSTSVVKVAFAASYHLPAAASPPVSCAAATISRFRSFSSA |
Ga0315290_112568541 | 3300031834 | Sediment | ELTVCFTSTSVVKVACAASYHFPAAASPPVSCAAATISKFVPLSAA |
Ga0315281_103017122 | 3300032163 | Sediment | MNWNTELTVCFVSMSAVNVAFAASYHAPAAASPPVSCAAAMISKFLSFSCA |
Ga0315281_112616562 | 3300032163 | Sediment | MNWNTELTVWLVSTSVVNVAFAASYHLPAAASPPTSCAAATISKCLSFSSA |
Ga0315270_104042242 | 3300032275 | Sediment | LLNWNTELTVCLVSTSVVYVAFAASYHLPAAGSPSVSCAAVTISRFLSFSSA |
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