NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104705

Metagenome Family F104705

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104705
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 50 residues
Representative Sequence MTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTNRFLTACGV
Number of Associated Samples 77
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 89.90 %
% of genes near scaffold ends (potentially truncated) 19.00 %
% of genes from short scaffolds (< 2000 bps) 73.00 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (43.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater
(44.000 % of family members)
Environment Ontology (ENVO) Unclassified
(79.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(84.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.
1TBL_comb47_HYPODRAFT_1000447123
2JGI24219J26650_10050197
3JGI26470J50227_10093001
4Ga0007811_10040023
5Ga0007875_10217783
6Ga0031655_103683801
7Ga0007829_100172972
8Ga0069718_154153992
9Ga0065177_100019010
10Ga0065177_10996302
11Ga0065173_10739711
12Ga0065171_10391542
13Ga0065171_10763001
14Ga0065171_10768592
15Ga0007791_101230022
16Ga0007795_102370222
17Ga0007827_100451673
18Ga0007876_10595692
19Ga0007876_10764345
20Ga0007876_10827744
21Ga0007819_10913671
22Ga0007857_10700332
23Ga0007859_10391393
24Ga0007866_10250496
25Ga0007866_10630502
26Ga0007852_11217182
27Ga0007805_10244961
28Ga0007828_10061243
29Ga0075464_106696742
30Ga0108970_101522453
31Ga0105105_108878682
32Ga0105093_107553952
33Ga0114973_1000015057
34Ga0114973_100149866
35Ga0105098_101930912
36Ga0114962_100126377
37Ga0114962_103168082
38Ga0114977_104441783
39Ga0114978_1000223315
40Ga0114978_101249974
41Ga0114981_106554842
42Ga0105102_103845252
43Ga0114976_101065873
44Ga0114976_101294261
45Ga0114972_105113533
46Ga0114951_100811453
47Ga0114964_102887122
48Ga0136644_105220991
49Ga0133913_1032174812
50Ga0133913_104167923
51Ga0133913_110764702
52Ga0133913_111773403
53Ga0133913_119453911
54Ga0133913_121669732
55Ga0164294_110669031
56Ga0164296_11298005
57Ga0181350_10024793
58Ga0181350_10230575
59Ga0207193_16164072
60Ga0211732_12728431
61Ga0211733_100354923
62Ga0214237_10381791
63Ga0214192_10165202
64Ga0194047_103078251
65Ga0212088_102127294
66Ga0248169_11450610
67Ga0214921_10000016121
68Ga0208504_10146961
69Ga0208382_10187233
70Ga0208738_10189885
71Ga0208738_10625132
72Ga0208250_10084493
73Ga0208743_10004773
74Ga0208380_10133995
75Ga0208380_10160492
76Ga0208874_10091692
77Ga0208616_10041882
78Ga0208253_10473232
79Ga0208744_10453852
80Ga0208379_10673034
81Ga0208379_11172242
82Ga0208741_100114715
83Ga0208741_100562004
84Ga0208386_100143111
85Ga0208867_10248232
86Ga0208498_10263512
87Ga0208499_10592192
88Ga0208916_104199122
89Ga0209188_11020333
90Ga0209297_13249811
91Ga0209087_100415411
92Ga0209087_10923734
93Ga0209500_1000037658
94Ga0209500_100004697
95Ga0209777_102067832
96Ga0209668_1000013143
97Ga0316232_13009032
98Ga0335002_0699884_217_372
99Ga0335020_0116573_543_698
100Ga0335020_0560312_41_196
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 74.51%    β-sheet: 0.00%    Coil/Unstructured: 25.49%
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Variant

5101520253035404550MTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTNRFLTACGVSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
57.0%43.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Sediment
Freshwater Sediment
Freshwater
Freshwater
Freshwater Lake
Lentic
Freshwater
Freshwater Lake Sediment
Freshwater
Anoxic Zone Freshwater
Freshwater Lake
Freshwater Lake Hypolimnion
Freshwater
Freshwater Lake Sediment
Aqueous
Estuary
4.0%44.0%3.0%3.0%7.0%25.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
TBL_comb47_HYPODRAFT_10004471233300000553FreshwaterMAREIKEMPDRKSARIAAEAFAQVARAVNPRFNFDRFYTACGV*
JGI24219J26650_100501973300002098LenticMTRKHFIAMAKEIAQMTDRKSARIAAEAFAQVARGVNSRFDTNRFLTACGV*
JGI26470J50227_100930013300003375FreshwaterMTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVACSTNPRFDFNRFYTACGV*
Ga0007811_100400233300003787FreshwaterMTRKHFVAMAREIAEMTDRKSARIAAEAFAAVARTVNSRFDTNRFLTACGV*
Ga0007875_102177833300003823FreshwaterMTRKHFVAMAREIAEMTDRKSARIAAEAFAAVARTVNSRF
Ga0031655_1036838013300003852Freshwater Lake SedimentMTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTNRFLTACGV*
Ga0007829_1001729723300004095FreshwaterMTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTQRFLTACGV*
Ga0069718_1541539923300004481SedimentMSKKHFVAMAKEISSMPDRNAARITAESFARVAQTANPRFDLNRFLTACGVA*
Ga0065177_1000190103300004685FreshwaterMTRKHFVAMAQEIAQMPDRESARIAAEAFAAVARTVNSRFDTERFLTACGV*
Ga0065177_109963023300004685FreshwaterMTRKHFVAMAREIAQMPDRESARIAAQAFAAVARTVNSRFNTERFLTACGV*
Ga0065173_107397113300004686FreshwaterMTKKHFIAMAREISQMPDRKSARIAAEAFAQVARAVNPRFDFDRFYTACGV*
Ga0065171_103915423300004692FreshwaterMTRKHFIAMAQEISQMPDRKSARIAAEAFAAVARTVNSRFDTERFLTACGV*
Ga0065171_107630013300004692FreshwaterMTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV*
Ga0065171_107685923300004692FreshwaterMTTKHFIAMAREISQMPDRKSARIAAEAFAQVARAVNPRFDFDRFYTACGV*
Ga0007791_1012300223300004772FreshwaterMTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARLVNSRFDTNRFLTACGV*
Ga0007795_1023702223300004773FreshwaterMTRKHFIAMAKEIAQMTDRKSARIAAEAFAQVARLVNSRFDTNRFLTACGV*
Ga0007827_1004516733300004777FreshwaterMTRKHFVAMAREISQMPDRESARIAAQTFAAVARTVNSRFDTNRFL
Ga0007876_105956923300006071FreshwaterMSRKHFIAMAKEIAQMPDRKSARIAAEAFAQVARSVNSRFDLDRFYTACGV*
Ga0007876_107643453300006071FreshwaterAMAREIAEMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV*
Ga0007876_108277443300006071FreshwaterMTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPRFNFDRFYTACGV*
Ga0007819_109136713300006105FreshwaterMTKKHFIAMAREIAEMPDRKSARIAAEAFAQVARAVNPRFDFNR
Ga0007857_107003323300006112FreshwaterMTKKHFIAMAQEISQMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV*
Ga0007859_103913933300006118FreshwaterMTRKHFVAMAREISQMPDRESARIAAQTFAAVARTVNSRFDTNRFLIACGV*
Ga0007866_102504963300006119FreshwaterMTKKHFIAMAQEISQMPDRKSARIAAEAFAAVARTVNSRFDTERFLTACGV*
Ga0007866_106305023300006119FreshwaterMTRKHFVAMAQEIAQMPDRKSARTVAEAFAQVARLTNPRFDFNRFYTACGV*
Ga0007852_112171823300006123FreshwaterMTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPRFDLNRFYTACGV*
Ga0007805_102449613300006127FreshwaterMTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPR
Ga0007828_100612433300006128FreshwaterMTRKHFIAMAQEIAQMTDRKSARIAAEAFAQVARSVNSRFNTERFLTACGV*
Ga0075464_1066967423300006805AqueousMSKKHFVAMAKEISSMPDRNAARIVAESFARVASGANPRFDLNRFLTACGV*
Ga0108970_1015224533300008055EstuaryMTKKHFIAMAKEISQMPDRKSARITAEAFCKVAQTTNPRFNQSRFLEACGV*
Ga0105105_1088786823300009009Freshwater SedimentMTRKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFDRFFTACGV*
Ga0105093_1075539523300009037Freshwater SedimentMTRKHFIAMAKEISQMPDRKSAKIAAEAFAQVAHSVNPRFDFGRFFTACG
Ga0114973_10000150573300009068Freshwater LakeMTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNSRFDTTRFLTACGV*
Ga0114973_1001498663300009068Freshwater LakeMTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV*
Ga0105098_1019309123300009081Freshwater SedimentMTKKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNPRFDQARFLTACGV*
Ga0114962_1001263773300009151Freshwater LakeMTKKHFIAMAKEISQMADRKSARVAAEAFAQVARSVNPRFDQTKFLTACGV*
Ga0114962_1031680823300009151Freshwater LakeMTRKHFIAMAQEIAQMADRKSARIAAEAFAQVARSVNSRFDTNRFLTACGV*
Ga0114977_1044417833300009158Freshwater LakeMTRKHFIAMAKEIAQMADRKSARIAAEAFAQVASTTNSRFDTQRFLTACGV*
Ga0114978_10002233153300009159Freshwater LakeMTRKHFVAMAREIAQMTDRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV*
Ga0114978_1012499743300009159Freshwater LakeMTKKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFDRFFTACGV*
Ga0114981_1065548423300009160Freshwater LakeMTRKHFIAMAKEIAQMADRESARIAAEAFAQVARTTNSRFDTNRFLTACGV*
Ga0105102_1038452523300009165Freshwater SedimentMTKKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNPRFDQTRFLTACGV*
Ga0114976_1010658733300009184Freshwater LakeMTKKHFIAMAKEISEMPDRKSAKIAAEAFAQVARSINPRFDFGRFFTACGV*
Ga0114976_1012942613300009184Freshwater LakeHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFNRFLTACGV*
Ga0114972_1051135333300009187Freshwater LakeTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV*
Ga0114951_1008114533300009502FreshwaterMTRKHFVAMAREIANMQDRNAAKTVALAFAQVAGSVNPRFDFNRFYIACGV*
Ga0114964_1028871223300010157Freshwater LakeMTRKHFIAMAKEISQMPDRKSARIAAEAFAQVARSVNPRFDFG
Ga0136644_1052209913300010334Freshwater LakeMTKKHFIAMAKEISQMADRKSARVAAEAFAQVARSVNPRFDQTKFLTACG
Ga0133913_10321748123300010885Freshwater LakeMTKKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFNRFLTACGV*
Ga0133913_1041679233300010885Freshwater LakeMSKKHFVAMAKEISSMPDRNAARTVAESFARVAQAANPRFDLNRFLTACGV*
Ga0133913_1107647023300010885Freshwater LakeMTRKHFIAMAKEISQMPDRKSARIAAEAFAQVARSVNPRFDFGRFLTACGV*
Ga0133913_1117734033300010885Freshwater LakeMSKKHFVAMAREISSMPDRTAARTVAESFARVASGANPRFDLNRFLTACGV*
Ga0133913_1194539113300010885Freshwater LakeMTRKHFVAMAKEIAQMPDRKSARIAAEAFAQVARSVNPRFDFGRFFTACGV*
Ga0133913_1216697323300010885Freshwater LakeMTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARAVNSRFDTNRFLTACGV*
Ga0164294_1106690313300013006FreshwaterMTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARGVNSRFDTNRFLTA
Ga0164296_112980053300013093FreshwaterSKKLGADMTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVACSTNPRFDFNRFYTACGV*
Ga0181350_100247933300017716Freshwater LakeMSKKHFVAMAREISLMPDRDAARIVAESFARVAAGANPRFDLNRFLTACGV
Ga0181350_102305753300017716Freshwater LakeMSKKHFVAMAREISSMPDRKAARTVAESFARVAQASNPRFDLNRFLTACGV
Ga0207193_161640723300020048Freshwater Lake SedimentMTRKHFVAMAKEIAQMADRKSARIAAEAFAQVARSVNPRFDQARFLTACGV
Ga0211732_127284313300020141FreshwaterFVAMAKEISSMPDRSAARIVAESFARVASGANPRFDLNRFLTACGV
Ga0211733_1003549233300020160FreshwaterMSKKHFVAMAKEISSMPDRSAARIVAESFARVASGANPRFDLNRFLTACGV
Ga0214237_103817913300020711FreshwaterMTRKHFIAMAREIKEMPDRKSARIAAEAFAQVARAVNPRFNFDRFYTACGV
Ga0214192_101652023300021142FreshwaterMTRKHFIAMAKEINQMSDRKSAKIAAEAFAQVARSVNPRFDFGRFFTACGV
Ga0194047_1030782513300021354Anoxic Zone FreshwaterMTRKHFIAMAKEISQMADRKSARIAAEAFAQVARTTNSRFDTNRFLTACGV
Ga0212088_1021272943300022555Freshwater Lake HypolimnionMTRKHFVAMAREIANMQDRNAAKTVALAFAQVAGSVNPRFDFNRFYIACGV
Ga0248169_114506103300022602FreshwaterMTRKHFVAMAQEIAQMPDRKSARTVAEAFAQVARLTNPRFDFNRFYTACGV
Ga0214921_100000161213300023174FreshwaterMTKKHFIAMAKEISQMSDRKSARITAEAFCKVAQTTNPRFNQARFLEACGV
Ga0208504_101469613300025358FreshwaterMTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVACSTNPRFDFNRFYTACGV
Ga0208382_101872333300025369FreshwaterMTRKHFVAMAREIAEMTDRKSARIAAEAFAAVARTVNSRFDTNRFLTACGV
Ga0208738_101898853300025379FreshwaterMTRKHFVAMAREIAQMPDRESARIAAQAFAAVARTVNSRFNTERFLTACGV
Ga0208738_106251323300025379FreshwaterMTKKHFIAMAREIAEMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV
Ga0208250_100844933300025383FreshwaterMTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPRFDLNRFYTACGV
Ga0208743_100047733300025390FreshwaterMTRKHFVAMAQEIAQMPDRESARIAAEAFAAVARTVNSRFDTERFLTACGV
Ga0208380_101339953300025392FreshwaterMTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV
Ga0208380_101604923300025392FreshwaterMTRKHFIAMAQEISQMPDRKSARIAAEAFAAVARTVNSRFDTERFLTACGV
Ga0208874_100916923300025396FreshwaterMTKKHFIAMAQEISQMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV
Ga0208616_100418823300025417FreshwaterMTRKHFIAMAQEIAQMTDRKSARIAAEAFAQVARSVNSRFNTERFLTACGV
Ga0208253_104732323300025418FreshwaterMTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPRFNFDRFYTACGV
Ga0208744_104538523300025450FreshwaterMAREIAEMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV
Ga0208379_106730343300025598FreshwaterAMAKEIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV
Ga0208379_111722423300025598FreshwaterMTRKHFVAMAQEIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV
Ga0208741_1001147153300025723FreshwaterMTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTQRFLTACGV
Ga0208741_1005620043300025723FreshwaterMAREIAEMTDRKSARIAAEAFAAVARTVNSRFDTNRFLTACGV
Ga0208386_1001431113300025781FreshwaterMTRKHFIAMAQEIAQMTDRKSARIAAEAFAQVARLVNSRFN
Ga0208867_102482323300025782FreshwaterMTRKHFIAMAREIAQMTDRKSARIAAEAFAAVARTVNSRFDTERFLTACGV
Ga0208498_102635123300025785FreshwaterMSRKHFIAMAKEIAQMPDRKSARIAAEAFAQVARSVNSRFDLDRFYTACGV
Ga0208499_105921923300025789FreshwaterMTRKHFVAMAREIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV
Ga0208916_1041991223300025896AqueousMSKKHFVAMAKEISSMPDRNAARIVAESFARVASGANPRFDLNRFLTACGV
Ga0209188_110203333300027708Freshwater LakeMTKKHFIAMAKEISQMADRKSARVAAEAFAQVARSVNPRFDQTKFLTACGV
Ga0209297_132498113300027733Freshwater LakeMTKKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPR
Ga0209087_1004154113300027734Freshwater LakeMTKKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFDRFFTACGV
Ga0209087_109237343300027734Freshwater LakeHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFNRFLTACGV
Ga0209500_10000376583300027782Freshwater LakeMTRKHFVAMAREIAQMTDRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV
Ga0209500_1000046973300027782Freshwater LakeMTKKHFIAMAKEISQMTDRTSARITAEAFCKVAQSVNSRFDQAKFLEACKV
Ga0209777_1020678323300027896Freshwater Lake SedimentMTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTNRFLTACGV
Ga0209668_10000131433300027899Freshwater Lake SedimentMTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNSRFDTQRFLTACGV
Ga0316232_130090323300032605FreshwaterMTRKHFIAMANEIAQMPDRASARIVAEAFAQVARSVNSRFDLNRFYTACGV
Ga0335002_0699884_217_3723300034020FreshwaterMTRKHFVAMAREISQMPDRKSARIAAEAFAQVARSVNPRFDLNRFLTACGV
Ga0335020_0116573_543_6983300034082FreshwaterMSKKHFVAMAREISSMPDRKSARTVAESFARVAQAANPRFDLNRFLTACGV
Ga0335020_0560312_41_1963300034082FreshwaterMTRKHFVAMAKEIAQMPDRKSARIAAEAFAQVARSVNPRFDFGRFLTACGV


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