Basic Information | |
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Family ID | F104705 |
Family Type | Metagenome |
Number of Sequences | 100 |
Average Sequence Length | 50 residues |
Representative Sequence | MTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTNRFLTACGV |
Number of Associated Samples | 77 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 89.90 % |
% of genes near scaffold ends (potentially truncated) | 19.00 % |
% of genes from short scaffolds (< 2000 bps) | 73.00 % |
Associated GOLD sequencing projects | 64 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (43.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (44.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (79.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (84.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 74.51% β-sheet: 0.00% Coil/Unstructured: 25.49% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Sediment Freshwater Sediment Freshwater Freshwater Freshwater Lake Lentic Freshwater Freshwater Lake Sediment Freshwater Anoxic Zone Freshwater Freshwater Lake Freshwater Lake Hypolimnion Freshwater Freshwater Lake Sediment Aqueous Estuary |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
TBL_comb47_HYPODRAFT_1000447123 | 3300000553 | Freshwater | MAREIKEMPDRKSARIAAEAFAQVARAVNPRFNFDRFYTACGV* |
JGI24219J26650_10050197 | 3300002098 | Lentic | MTRKHFIAMAKEIAQMTDRKSARIAAEAFAQVARGVNSRFDTNRFLTACGV* |
JGI26470J50227_10093001 | 3300003375 | Freshwater | MTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVACSTNPRFDFNRFYTACGV* |
Ga0007811_10040023 | 3300003787 | Freshwater | MTRKHFVAMAREIAEMTDRKSARIAAEAFAAVARTVNSRFDTNRFLTACGV* |
Ga0007875_10217783 | 3300003823 | Freshwater | MTRKHFVAMAREIAEMTDRKSARIAAEAFAAVARTVNSRF |
Ga0031655_103683801 | 3300003852 | Freshwater Lake Sediment | MTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTNRFLTACGV* |
Ga0007829_100172972 | 3300004095 | Freshwater | MTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTQRFLTACGV* |
Ga0069718_154153992 | 3300004481 | Sediment | MSKKHFVAMAKEISSMPDRNAARITAESFARVAQTANPRFDLNRFLTACGVA* |
Ga0065177_100019010 | 3300004685 | Freshwater | MTRKHFVAMAQEIAQMPDRESARIAAEAFAAVARTVNSRFDTERFLTACGV* |
Ga0065177_10996302 | 3300004685 | Freshwater | MTRKHFVAMAREIAQMPDRESARIAAQAFAAVARTVNSRFNTERFLTACGV* |
Ga0065173_10739711 | 3300004686 | Freshwater | MTKKHFIAMAREISQMPDRKSARIAAEAFAQVARAVNPRFDFDRFYTACGV* |
Ga0065171_10391542 | 3300004692 | Freshwater | MTRKHFIAMAQEISQMPDRKSARIAAEAFAAVARTVNSRFDTERFLTACGV* |
Ga0065171_10763001 | 3300004692 | Freshwater | MTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV* |
Ga0065171_10768592 | 3300004692 | Freshwater | MTTKHFIAMAREISQMPDRKSARIAAEAFAQVARAVNPRFDFDRFYTACGV* |
Ga0007791_101230022 | 3300004772 | Freshwater | MTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARLVNSRFDTNRFLTACGV* |
Ga0007795_102370222 | 3300004773 | Freshwater | MTRKHFIAMAKEIAQMTDRKSARIAAEAFAQVARLVNSRFDTNRFLTACGV* |
Ga0007827_100451673 | 3300004777 | Freshwater | MTRKHFVAMAREISQMPDRESARIAAQTFAAVARTVNSRFDTNRFL |
Ga0007876_10595692 | 3300006071 | Freshwater | MSRKHFIAMAKEIAQMPDRKSARIAAEAFAQVARSVNSRFDLDRFYTACGV* |
Ga0007876_10764345 | 3300006071 | Freshwater | AMAREIAEMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV* |
Ga0007876_10827744 | 3300006071 | Freshwater | MTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPRFNFDRFYTACGV* |
Ga0007819_10913671 | 3300006105 | Freshwater | MTKKHFIAMAREIAEMPDRKSARIAAEAFAQVARAVNPRFDFNR |
Ga0007857_10700332 | 3300006112 | Freshwater | MTKKHFIAMAQEISQMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV* |
Ga0007859_10391393 | 3300006118 | Freshwater | MTRKHFVAMAREISQMPDRESARIAAQTFAAVARTVNSRFDTNRFLIACGV* |
Ga0007866_10250496 | 3300006119 | Freshwater | MTKKHFIAMAQEISQMPDRKSARIAAEAFAAVARTVNSRFDTERFLTACGV* |
Ga0007866_10630502 | 3300006119 | Freshwater | MTRKHFVAMAQEIAQMPDRKSARTVAEAFAQVARLTNPRFDFNRFYTACGV* |
Ga0007852_11217182 | 3300006123 | Freshwater | MTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPRFDLNRFYTACGV* |
Ga0007805_10244961 | 3300006127 | Freshwater | MTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPR |
Ga0007828_10061243 | 3300006128 | Freshwater | MTRKHFIAMAQEIAQMTDRKSARIAAEAFAQVARSVNSRFNTERFLTACGV* |
Ga0075464_106696742 | 3300006805 | Aqueous | MSKKHFVAMAKEISSMPDRNAARIVAESFARVASGANPRFDLNRFLTACGV* |
Ga0108970_101522453 | 3300008055 | Estuary | MTKKHFIAMAKEISQMPDRKSARITAEAFCKVAQTTNPRFNQSRFLEACGV* |
Ga0105105_108878682 | 3300009009 | Freshwater Sediment | MTRKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFDRFFTACGV* |
Ga0105093_107553952 | 3300009037 | Freshwater Sediment | MTRKHFIAMAKEISQMPDRKSAKIAAEAFAQVAHSVNPRFDFGRFFTACG |
Ga0114973_1000015057 | 3300009068 | Freshwater Lake | MTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNSRFDTTRFLTACGV* |
Ga0114973_100149866 | 3300009068 | Freshwater Lake | MTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV* |
Ga0105098_101930912 | 3300009081 | Freshwater Sediment | MTKKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNPRFDQARFLTACGV* |
Ga0114962_100126377 | 3300009151 | Freshwater Lake | MTKKHFIAMAKEISQMADRKSARVAAEAFAQVARSVNPRFDQTKFLTACGV* |
Ga0114962_103168082 | 3300009151 | Freshwater Lake | MTRKHFIAMAQEIAQMADRKSARIAAEAFAQVARSVNSRFDTNRFLTACGV* |
Ga0114977_104441783 | 3300009158 | Freshwater Lake | MTRKHFIAMAKEIAQMADRKSARIAAEAFAQVASTTNSRFDTQRFLTACGV* |
Ga0114978_1000223315 | 3300009159 | Freshwater Lake | MTRKHFVAMAREIAQMTDRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV* |
Ga0114978_101249974 | 3300009159 | Freshwater Lake | MTKKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFDRFFTACGV* |
Ga0114981_106554842 | 3300009160 | Freshwater Lake | MTRKHFIAMAKEIAQMADRESARIAAEAFAQVARTTNSRFDTNRFLTACGV* |
Ga0105102_103845252 | 3300009165 | Freshwater Sediment | MTKKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNPRFDQTRFLTACGV* |
Ga0114976_101065873 | 3300009184 | Freshwater Lake | MTKKHFIAMAKEISEMPDRKSAKIAAEAFAQVARSINPRFDFGRFFTACGV* |
Ga0114976_101294261 | 3300009184 | Freshwater Lake | HFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFNRFLTACGV* |
Ga0114972_105113533 | 3300009187 | Freshwater Lake | TRKHFIAMAKEIAQMADRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV* |
Ga0114951_100811453 | 3300009502 | Freshwater | MTRKHFVAMAREIANMQDRNAAKTVALAFAQVAGSVNPRFDFNRFYIACGV* |
Ga0114964_102887122 | 3300010157 | Freshwater Lake | MTRKHFIAMAKEISQMPDRKSARIAAEAFAQVARSVNPRFDFG |
Ga0136644_105220991 | 3300010334 | Freshwater Lake | MTKKHFIAMAKEISQMADRKSARVAAEAFAQVARSVNPRFDQTKFLTACG |
Ga0133913_1032174812 | 3300010885 | Freshwater Lake | MTKKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFNRFLTACGV* |
Ga0133913_104167923 | 3300010885 | Freshwater Lake | MSKKHFVAMAKEISSMPDRNAARTVAESFARVAQAANPRFDLNRFLTACGV* |
Ga0133913_110764702 | 3300010885 | Freshwater Lake | MTRKHFIAMAKEISQMPDRKSARIAAEAFAQVARSVNPRFDFGRFLTACGV* |
Ga0133913_111773403 | 3300010885 | Freshwater Lake | MSKKHFVAMAREISSMPDRTAARTVAESFARVASGANPRFDLNRFLTACGV* |
Ga0133913_119453911 | 3300010885 | Freshwater Lake | MTRKHFVAMAKEIAQMPDRKSARIAAEAFAQVARSVNPRFDFGRFFTACGV* |
Ga0133913_121669732 | 3300010885 | Freshwater Lake | MTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARAVNSRFDTNRFLTACGV* |
Ga0164294_110669031 | 3300013006 | Freshwater | MTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARGVNSRFDTNRFLTA |
Ga0164296_11298005 | 3300013093 | Freshwater | SKKLGADMTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVACSTNPRFDFNRFYTACGV* |
Ga0181350_10024793 | 3300017716 | Freshwater Lake | MSKKHFVAMAREISLMPDRDAARIVAESFARVAAGANPRFDLNRFLTACGV |
Ga0181350_10230575 | 3300017716 | Freshwater Lake | MSKKHFVAMAREISSMPDRKAARTVAESFARVAQASNPRFDLNRFLTACGV |
Ga0207193_16164072 | 3300020048 | Freshwater Lake Sediment | MTRKHFVAMAKEIAQMADRKSARIAAEAFAQVARSVNPRFDQARFLTACGV |
Ga0211732_12728431 | 3300020141 | Freshwater | FVAMAKEISSMPDRSAARIVAESFARVASGANPRFDLNRFLTACGV |
Ga0211733_100354923 | 3300020160 | Freshwater | MSKKHFVAMAKEISSMPDRSAARIVAESFARVASGANPRFDLNRFLTACGV |
Ga0214237_10381791 | 3300020711 | Freshwater | MTRKHFIAMAREIKEMPDRKSARIAAEAFAQVARAVNPRFNFDRFYTACGV |
Ga0214192_10165202 | 3300021142 | Freshwater | MTRKHFIAMAKEINQMSDRKSAKIAAEAFAQVARSVNPRFDFGRFFTACGV |
Ga0194047_103078251 | 3300021354 | Anoxic Zone Freshwater | MTRKHFIAMAKEISQMADRKSARIAAEAFAQVARTTNSRFDTNRFLTACGV |
Ga0212088_102127294 | 3300022555 | Freshwater Lake Hypolimnion | MTRKHFVAMAREIANMQDRNAAKTVALAFAQVAGSVNPRFDFNRFYIACGV |
Ga0248169_11450610 | 3300022602 | Freshwater | MTRKHFVAMAQEIAQMPDRKSARTVAEAFAQVARLTNPRFDFNRFYTACGV |
Ga0214921_10000016121 | 3300023174 | Freshwater | MTKKHFIAMAKEISQMSDRKSARITAEAFCKVAQTTNPRFNQARFLEACGV |
Ga0208504_10146961 | 3300025358 | Freshwater | MTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVACSTNPRFDFNRFYTACGV |
Ga0208382_10187233 | 3300025369 | Freshwater | MTRKHFVAMAREIAEMTDRKSARIAAEAFAAVARTVNSRFDTNRFLTACGV |
Ga0208738_10189885 | 3300025379 | Freshwater | MTRKHFVAMAREIAQMPDRESARIAAQAFAAVARTVNSRFNTERFLTACGV |
Ga0208738_10625132 | 3300025379 | Freshwater | MTKKHFIAMAREIAEMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV |
Ga0208250_10084493 | 3300025383 | Freshwater | MTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPRFDLNRFYTACGV |
Ga0208743_10004773 | 3300025390 | Freshwater | MTRKHFVAMAQEIAQMPDRESARIAAEAFAAVARTVNSRFDTERFLTACGV |
Ga0208380_10133995 | 3300025392 | Freshwater | MTRKHFVAMAKEIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV |
Ga0208380_10160492 | 3300025392 | Freshwater | MTRKHFIAMAQEISQMPDRKSARIAAEAFAAVARTVNSRFDTERFLTACGV |
Ga0208874_10091692 | 3300025396 | Freshwater | MTKKHFIAMAQEISQMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV |
Ga0208616_10041882 | 3300025417 | Freshwater | MTRKHFIAMAQEIAQMTDRKSARIAAEAFAQVARSVNSRFNTERFLTACGV |
Ga0208253_10473232 | 3300025418 | Freshwater | MTRKHFIAMAKEISQMSDRKSARIAAEAFAQVARAVNPRFNFDRFYTACGV |
Ga0208744_10453852 | 3300025450 | Freshwater | MAREIAEMPDRKSARIAAEAFAQVARAVNPRFDFNRFYTACGV |
Ga0208379_10673034 | 3300025598 | Freshwater | AMAKEIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV |
Ga0208379_11172242 | 3300025598 | Freshwater | MTRKHFVAMAQEIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV |
Ga0208741_100114715 | 3300025723 | Freshwater | MTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTQRFLTACGV |
Ga0208741_100562004 | 3300025723 | Freshwater | MAREIAEMTDRKSARIAAEAFAAVARTVNSRFDTNRFLTACGV |
Ga0208386_100143111 | 3300025781 | Freshwater | MTRKHFIAMAQEIAQMTDRKSARIAAEAFAQVARLVNSRFN |
Ga0208867_10248232 | 3300025782 | Freshwater | MTRKHFIAMAREIAQMTDRKSARIAAEAFAAVARTVNSRFDTERFLTACGV |
Ga0208498_10263512 | 3300025785 | Freshwater | MSRKHFIAMAKEIAQMPDRKSARIAAEAFAQVARSVNSRFDLDRFYTACGV |
Ga0208499_10592192 | 3300025789 | Freshwater | MTRKHFVAMAREIAQMPDRKSARTVAEAFAQVARSVNSRFDLNRFYTACGV |
Ga0208916_104199122 | 3300025896 | Aqueous | MSKKHFVAMAKEISSMPDRNAARIVAESFARVASGANPRFDLNRFLTACGV |
Ga0209188_11020333 | 3300027708 | Freshwater Lake | MTKKHFIAMAKEISQMADRKSARVAAEAFAQVARSVNPRFDQTKFLTACGV |
Ga0209297_13249811 | 3300027733 | Freshwater Lake | MTKKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPR |
Ga0209087_100415411 | 3300027734 | Freshwater Lake | MTKKHFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFDRFFTACGV |
Ga0209087_10923734 | 3300027734 | Freshwater Lake | HFIAMAKEISQMPDRKSAKIAAEAFAQVARSVNPRFDFNRFLTACGV |
Ga0209500_1000037658 | 3300027782 | Freshwater Lake | MTRKHFVAMAREIAQMTDRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV |
Ga0209500_100004697 | 3300027782 | Freshwater Lake | MTKKHFIAMAKEISQMTDRTSARITAEAFCKVAQSVNSRFDQAKFLEACKV |
Ga0209777_102067832 | 3300027896 | Freshwater Lake Sediment | MTRKHFIAMAQEIAQMPDRKSARIAAEAFAQVARSVNSRFDTNRFLTACGV |
Ga0209668_1000013143 | 3300027899 | Freshwater Lake Sediment | MTRKHFIAMAKEIAQMADRKSARIAAEAFAQVARSVNSRFDTQRFLTACGV |
Ga0316232_13009032 | 3300032605 | Freshwater | MTRKHFIAMANEIAQMPDRASARIVAEAFAQVARSVNSRFDLNRFYTACGV |
Ga0335002_0699884_217_372 | 3300034020 | Freshwater | MTRKHFVAMAREISQMPDRKSARIAAEAFAQVARSVNPRFDLNRFLTACGV |
Ga0335020_0116573_543_698 | 3300034082 | Freshwater | MSKKHFVAMAREISSMPDRKSARTVAESFARVAQAANPRFDLNRFLTACGV |
Ga0335020_0560312_41_196 | 3300034082 | Freshwater | MTRKHFVAMAKEIAQMPDRKSARIAAEAFAQVARSVNPRFDFGRFLTACGV |
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