Basic Information | |
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Family ID | F104669 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 50 residues |
Representative Sequence | MNTLARNGGLWIAVGTAAGAAVGVALGVASVGLAIGLALGILGGYLARR |
Number of Associated Samples | 74 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 64 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.63 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (20.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (38.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (46.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.14% β-sheet: 0.00% Coil/Unstructured: 42.86% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.63 |
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Visualization |
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Freshwater Sediment Freshwater Lake Sediment Freshwater Sediment Sediment Wetland Sediment Estuarine Natural And Restored Wetlands Wetland Sediment Groundwater Sediment Soil Terrestrial Soil Soil Soil Soil Soil Natural And Restored Wetlands Switchgrass Rhizosphere Peat Soil Sediment Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
LWAeNNiSIP_4835080 | 2046860007 | Freshwater Sediment | MNTLARNGGFWIVVGTAAGTATGMALGVASVGLALGLALGILGGCLTRR |
JGIcombinedJ13530_1047684151 | 3300001213 | Wetland | MNTLTRNGGFWIVAGTAAGTAIGMLLGVASVGLALGFALGILGGCLARR* |
Ga0031656_101093411 | 3300003858 | Freshwater Lake Sediment | MNTLARNGGFWIAAGTAAGTAIGMALGVASVGLALGLALGILGGCLTRR* |
Ga0031656_101173963 | 3300003858 | Freshwater Lake Sediment | VNTLARNGGFWIAAGTAAGTAIGMALGAASVGLALGLALGILGGCLTRR* |
Ga0031654_100054764 | 3300003861 | Freshwater Lake Sediment | MSTLARSGGLWIVVGTGIGTALGVAFGVGSVGLAFGLALGIVVGCLARR* |
Ga0055494_100008544 | 3300004048 | Natural And Restored Wetlands | MNTLARNGGLWIVVGTATGTAVGVVFGVASVGLALGFAVGILGGCLARR* |
Ga0055491_101752122 | 3300004050 | Natural And Restored Wetlands | MNTLARNGGLWIVVGTATGTAVGVVFGVASVGLALGFAVGLLGGCLARR* |
Ga0062589_1024064552 | 3300004156 | Soil | PGPVHDLGGPTMNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR |
Ga0063356_1035585852 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MNTLSRNGGLWIAVGTAAGVLVGVVFGMASVGLALGLLLGIAGGFVARR* |
Ga0070676_101492643 | 3300005328 | Miscanthus Rhizosphere | MGCGKLLPVLAATPGPVHDLGGPTMNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR* |
Ga0070676_113701111 | 3300005328 | Miscanthus Rhizosphere | KGERGPINHPGGPAMTTLSRNGGFWIAVGTATDTLAGVALGLASVGLALGLALGILGGYLARR* |
Ga0070676_114002781 | 3300005328 | Miscanthus Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLALGLILGIAGGFLARR* |
Ga0070690_1000281581 | 3300005330 | Switchgrass Rhizosphere | MNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR* |
Ga0070670_1000040524 | 3300005331 | Switchgrass Rhizosphere | MNTLSRNGGLWIAIGTAAGVLTGAAFGMASVGLALGLVLGIAGGFVARR* |
Ga0070670_1001339763 | 3300005331 | Switchgrass Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLALGLVLGIAGGFVARR* |
Ga0070677_107800692 | 3300005333 | Miscanthus Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGVAFGMASVGLALGLVLGIAGGFVARR* |
Ga0070666_103761171 | 3300005335 | Switchgrass Rhizosphere | MTTLSRNGGFWIAVGTATGTLVGVTLGVASVGLAAGLALGILGGYLARR* |
Ga0070666_111302051 | 3300005335 | Switchgrass Rhizosphere | VLAATPGPVHDLGGPTMNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR* |
Ga0070668_1006509552 | 3300005347 | Switchgrass Rhizosphere | MNTLSRNGGLWIAVGTAAGVLIGVVFGMASVGLALGLVLGIAGGFVARR* |
Ga0070671_1005541073 | 3300005355 | Switchgrass Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLAFGLVLGIAGGFVARR* |
Ga0070688_1011433463 | 3300005365 | Switchgrass Rhizosphere | TLSRNGGLWIAIGTAAGVLVGLAFGMASVGLALGLVLGIAGGFVARR* |
Ga0070688_1011775442 | 3300005365 | Switchgrass Rhizosphere | MNTLSRNGGLWIAVGTAAGVLIGVVFGMASVGLALGLLLGIAGGFVARR* |
Ga0070678_1002855711 | 3300005456 | Miscanthus Rhizosphere | MQTLSRNGGVWIAVGTGAGAAVGVAFGVASIGLAVGLALGLIGGYLARRR* |
Ga0070665_1017081741 | 3300005548 | Switchgrass Rhizosphere | TMNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLALGLVLGIAGGFVARR* |
Ga0068854_1022612861 | 3300005578 | Corn Rhizosphere | MHTLSRNGGLWIAIGTAAGVLAGAAFGMASVGLAFGLVLGIAGGFVAR |
Ga0068863_1018619381 | 3300005841 | Switchgrass Rhizosphere | RGPSMTTLSRNGGFWIAVGTATGTLVGVTLGVASVGLAAGLALGILGGYLARR* |
Ga0075428_1002134903 | 3300006844 | Populus Rhizosphere | MNTLSRNGGVWIAVGTAAGALAGVAFGMASVGLALGLLLGIVGSCVARR* |
Ga0105090_100714032 | 3300009075 | Freshwater Sediment | MNTLARNGGFWIAAGTAAGTAIGMALGAASVGLALGLALGILGGCLMRR* |
Ga0105248_103538692 | 3300009177 | Switchgrass Rhizosphere | MHTLSRNGGLWIAIGTAAGVLAGAAFGMASVGLALGLILGIAGGFLARR* |
Ga0134127_101451481 | 3300010399 | Terrestrial Soil | SCCGGLLPVLAATPGPVHDLGGPTMNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR* |
Ga0134122_111550621 | 3300010400 | Terrestrial Soil | MTTLSRNGGFWIAVGTATGTLVGVALGLASVGLAAGLALGILGGYLA |
Ga0134121_121141592 | 3300010401 | Terrestrial Soil | MNTLSRNGGLWIAVGTGAGALIGVVVGMASVGLALGFVLGIVGGYLARR* |
Ga0157374_116577381 | 3300013296 | Miscanthus Rhizosphere | MTTLSRNGGFWIAVGTATGTLGGVTLGVASVGLAAGLALGILGGYLARR* |
Ga0157378_123175143 | 3300013297 | Miscanthus Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLALGLVLGIAGGFVAR |
Ga0157376_102458891 | 3300014969 | Miscanthus Rhizosphere | LLPVLAATPGPVHDLGGPTMNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR* |
Ga0132258_103872644 | 3300015371 | Arabidopsis Rhizosphere | MNTLSRNGGLWIAVGTAAGALVGVMLGVASVGLALGLVLGIVGGYIARR* |
Ga0132257_1027204442 | 3300015373 | Arabidopsis Rhizosphere | MNTLSRNGGLWIAVGTAAGALVGVLLGMASVGLALGLVLGIVGGY |
Ga0132257_1039281831 | 3300015373 | Arabidopsis Rhizosphere | LWIAIGTAAGVLTGAAFGMASVGLALGLILGIAGGFVARR* |
Ga0184628_101286841 | 3300018083 | Groundwater Sediment | MNTLSRNGGLWIAVGTAAGVLIGVVFGMASVGLALGLVLGIAGGFVARR |
Ga0190274_106226983 | 3300018476 | Soil | MTTLSKNGGFWIAVGTGTGTLIGVALGLASVGLALGLALGILGGYLARR |
Ga0210341_16851813 | 3300021337 | Estuarine | MNTLARSGGLWIAVGTATGTAVGLVFGVASVGLALGFAVGILGGCLARR |
Ga0224500_100363831 | 3300022213 | Sediment | MNTLARNGGLWIVVGTATGTAVGVVFGVASVGLALGFAVGILGGCLARR |
Ga0210376_10581543 | 3300022385 | Estuarine | RMNTLARSGGLWIAVGTATGTAVGLVFGVASVGLALGFAVGILGGCLARR |
Ga0207688_110030792 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MNTLSRNGGLWIAIGTAAGVLTGAAFGIASVGLALGLVLGIAGGFVARR |
Ga0207680_108275712 | 3300025903 | Switchgrass Rhizosphere | MTTLSRNGGFWIAVGTATGTLVGVTLGVASVGLAAGLALGILGGYLARR |
Ga0207645_101496131 | 3300025907 | Miscanthus Rhizosphere | MNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR |
Ga0207643_101214224 | 3300025908 | Miscanthus Rhizosphere | LGGPTMNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR |
Ga0207662_110326502 | 3300025918 | Switchgrass Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLAFGLVLGIAGGFVARG |
Ga0207681_100187856 | 3300025923 | Switchgrass Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLALGLVLGIAGGFVARR |
Ga0207681_115882481 | 3300025923 | Switchgrass Rhizosphere | MTTLSRNGGFWIAVGTATGTLAGVALGLASVGLALGLALGILGGYLARR |
Ga0207650_100531805 | 3300025925 | Switchgrass Rhizosphere | MNTLSRNGGLWIAIGTAAGVLTGAAFGMASVGLALGLVLGIAGGFVARR |
Ga0207650_100576585 | 3300025925 | Switchgrass Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLAFGLVLGIAGGFVARR |
Ga0207659_100367934 | 3300025926 | Miscanthus Rhizosphere | MGCGKLLPVLAATPGPVHDLGGPTMNTLSRNGGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR |
Ga0207644_110879501 | 3300025931 | Switchgrass Rhizosphere | MHTLSRNGGLWIAIGTAAGVLAGAAFGMASVGLALGLVLGIAGGFIARR |
Ga0207651_120817711 | 3300025960 | Switchgrass Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLAFGLVLG |
Ga0208541_10241821 | 3300026061 | Natural And Restored Wetlands | TLARKGGLWIVVGTATGTAVGVVFGVASVGLALGFAVGILGGCLARR |
Ga0207641_122318913 | 3300026088 | Switchgrass Rhizosphere | TLSRNGGLWIAIGTAAGVLVGLAFGMASVGLAFGLVLGIAGGFVARR |
Ga0207674_107540801 | 3300026116 | Corn Rhizosphere | MNTLSRNGGLWIAVGTAAGVLVGVVFGMASVGLALGLVLGIAGGFVARR |
Ga0207683_104789133 | 3300026121 | Miscanthus Rhizosphere | MNTLSRNGGLWIAIGTAAGVLVGLAFGMASVGLALGLILGIAGGFLARR |
Ga0207683_105583111 | 3300026121 | Miscanthus Rhizosphere | SAMQTLSRNGGVWIAVGTGAGAAVGVAFGVASIGLAVGLALGLIGGYLARRR |
Ga0207698_121923331 | 3300026142 | Corn Rhizosphere | MHTLSRNGGLWIASGTAAGVLAGAAFGMASVGLALGLVLGIAGGFVARR |
Ga0209798_100137736 | 3300027843 | Wetland Sediment | MNTLARNGGFWIAAGTAAGTAIGMALGVASVGLALGLALGLLGSCLTRR |
Ga0209254_100271202 | 3300027897 | Freshwater Lake Sediment | MNTLARNGGFWIAAGTAAGTAIGMALGVASVGLALGLALGILGGCLTRR |
Ga0209254_100324106 | 3300027897 | Freshwater Lake Sediment | VNTLARNGGFWIAAGTAAGTAIGMALGAASVGLALGLALGILGGCLTRR |
Ga0209254_102470413 | 3300027897 | Freshwater Lake Sediment | MNTLARNGGLWIAVCTGVGTAVGVALGAGSVGLAIGLAVGIAAGCLTRR |
Ga0209254_105669912 | 3300027897 | Freshwater Lake Sediment | MSTLARNGGLWIVVGTGAGTAVGMALGVASVGLALGLVLGILGGCLARR |
Ga0209253_104853932 | 3300027900 | Freshwater Lake Sediment | MNTLARNGGFWIAAGTAAGTAIGMALGVASVGLALGLAIGILGGCLARR |
Ga0209048_1000040014 | 3300027902 | Freshwater Lake Sediment | MSTLARSGGLWIVVGTGIGTALGVAFGVGSVGLAFGLALGIVVGCLARR |
Ga0209048_1000124311 | 3300027902 | Freshwater Lake Sediment | MNTLARNGGLWIAVCTGVGTAVGVALGVGSVGLAIGFAVGIAAGCLTRR |
Ga0209048_110328983 | 3300027902 | Freshwater Lake Sediment | LWIAIGTGIGAALGVALDYASVGLALGLAIGILAGSLARR |
Ga0209391_100892473 | 3300027975 | Freshwater Sediment | MNTLARNGGFWIAAGTAAGTAIGMALGAASVGLALGLALGILGGCLMRR |
Ga0268266_100650131 | 3300028379 | Switchgrass Rhizosphere | GGLWIAVGTAAGALVGVMLGVASIGLALGLVLGIVGGYVARR |
Ga0268264_119951532 | 3300028381 | Switchgrass Rhizosphere | MNTLSRNGGLWIAVGTGAGALIGVILGMASVGLALGFILGIIGGYLARR |
Ga0247822_107826283 | 3300028592 | Soil | MNTLSRNGGLWIALGTAAGVLIGVAFGMASVGLALGLVLGIAGGFIARR |
Ga0315290_100084704 | 3300031834 | Sediment | MNTLARNGGLWIAVGTGLGTAVGVALGIGSVGLAIGLVLGIVAGCVARR |
Ga0315290_101016443 | 3300031834 | Sediment | MNTLARNGGLWIAIGTGAGTAIGVALGVASVGLAVGLALGILGGYLARR |
Ga0315290_115319552 | 3300031834 | Sediment | MNTLAKNGGLWIAVGTGAGTAIGMALGVASVGLALGLALGILGGYLARR |
Ga0315290_115827141 | 3300031834 | Sediment | MNTLSKNGGFWIAIGTGTGALVGVALGIASIGLALGLVLGILGGYLARR |
Ga0315297_100134851 | 3300031873 | Sediment | MNTLARNGGLWIAVGTGLGTAVGVALGIGSVGLAIGLALGIVAGCVARR |
Ga0315297_104011213 | 3300031873 | Sediment | GHANGDLAMNTLARNGGLWIAIGTGAGTAIGVALGAASVGLAVGLALGILGGYLARR |
Ga0214473_105233571 | 3300031949 | Soil | MNTLARSGGLWIAVGTGAGTAVGVALGIASVGLAIGLALGILGGYLARR |
Ga0315278_112521331 | 3300031997 | Sediment | MNTLARNGGLWIAVGTGLGAIVGVAFGVGSVGLAIGLVMGIVAGCVARR |
Ga0315278_118739182 | 3300031997 | Sediment | MNTLARNGGFWIAAGTAAGAAIGMALGVASVGLALGLAIGILGGCLARR |
Ga0315278_119510561 | 3300031997 | Sediment | MNTLARNGGLWIAVGTAAGAAVGVALGVASVGLAIGLALGILGGYLAR |
Ga0315284_117172502 | 3300032053 | Sediment | MNTLAKNGGLWIAVGTAAGTAIGMALGVASVGLALGLALGILGGYLARR |
Ga0315281_114351321 | 3300032163 | Sediment | MNTLARNGGLWIAIGTGAGTAIGVALGAASVGLAVGLALGILGGYLARR |
Ga0315283_101186681 | 3300032164 | Sediment | MNTLARNGGFWIVAGTAAGTAIGMALGVASVGLALGLAIGILGGCLARR |
Ga0315283_107756621 | 3300032164 | Sediment | RAVRPACAHGGLAMNTLARNGGFWIAAGTAAGTAIGMALGVASVGLALGLALGILGGCLTRR |
Ga0315283_112748432 | 3300032164 | Sediment | MNTLARNGGFWIAAGTAAGTAIGMALGVASVGLALGFALGILGGCLTRR |
Ga0315283_121388102 | 3300032164 | Sediment | MNTLARNGGFWIAAGTAAGTAIGMALGVASVGLALGLALGILGGCLMRR |
Ga0315271_105929702 | 3300032256 | Sediment | MSTLARNGGFWIVVGTGAGAAAGMALGVASVGLALGLVLGILGGYLARR |
Ga0315286_109078723 | 3300032342 | Sediment | TRPGQSNGGLTMNTLARNGGLWIAIGTGAGTAIGVALGVASVGLAVGLALGILGGYLARR |
Ga0315286_112002692 | 3300032342 | Sediment | MNTLARNGGLWIAVGTAAGAAVGVALGVASVGLAIGLALGILGGYLARR |
Ga0315273_104198154 | 3300032516 | Sediment | MNTLSKNGGFWIAIGTGTGALVGVALGIASVGLALGLVLGILGGYLARR |
Ga0335069_116185841 | 3300032893 | Soil | MHTLARSGGFWIAVGSAVGMAAGMALGAASVGLAAGLAIG |
Ga0335084_110481633 | 3300033004 | Soil | MNTLSRNGGLWIAIGTAAGVLAGVAFGMASVGLALGLVLGIAGGFVARR |
Ga0334722_105972452 | 3300033233 | Sediment | MHTLARNGGLWIAIGTATGIAVGVALGIESVGLAVGLAAGILGGYLARR |
Ga0326726_113918702 | 3300033433 | Peat Soil | MSTLSRNGGLWIAVGTGAGALIGVILGVASVGLALGFVLGIVGGYLARR |
Ga0364945_0034698_1119_1268 | 3300034115 | Sediment | MKTLARNGGFWIAVGTGTGTLVGVAVGLASVGLALGLALGILGGYLARR |
Ga0364945_0252943_281_430 | 3300034115 | Sediment | MNTLSRNGGLWIAVGTGAGALIGVMLGMASVGLALGFALGIVGGYLARR |
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