Metagenome / Metatranscriptome Family F104615

Basic Information
Family ID	F104615
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	73 residues
Representative Sequence	MALKDLQKILQQVHEPDEYQLVAHDLTHEYYWIWKLENGKMKDLDLNLRQFRPEHARFDIFINGQYILEDDY
Number of Associated Samples	83
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	34.34 %
% of genes near scaffold ends (potentially truncated)	97.00 %
% of genes from short scaffolds (< 2000 bps)	86.00 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (60.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (29.000 % of family members)
Environment Ontology (ENVO)	Unclassified (46.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 1DelMOSum2011_100675702 2JGI24005J15628_102014612 3JGI26080J50196_10814791 4Ga0078894_105699931 5Ga0075481_100955332 6Ga0075477_102058701 7Ga0098045_11361022 8Ga0098046_10211201 9Ga0099848_10969121 10Ga0102963_14415452 11Ga0102957_12758442 12Ga0102854_10193623 13Ga0114994_106720222 14Ga0115545_10721922 15Ga0115563_11192812 16Ga0115563_13308471 17Ga0115554_11153161 18Ga0115004_107159921 19Ga0129352_110395532 20Ga0182051_13362191 21Ga0182062_12545513 22Ga0181373_10182301 23Ga0181398_10672642 24Ga0181381_10292852 25Ga0187222_10313101 26Ga0181389_10964092 27Ga0181394_12621272 28Ga0181423_12729891 29Ga0181584_104459672 30Ga0181584_107667202 31Ga0181580_102365892 32Ga0181580_106699822 33Ga0181580_107197061 34Ga0181571_100164416 35Ga0181590_102482481 36Ga0181585_101726333 37Ga0181585_103246042 38Ga0181576_100375461 39Ga0181576_105923752 40Ga0181572_101156923 41Ga0181572_102592021 42Ga0180430_108977162 43Ga0181553_103396741 44Ga0181591_106572142 45Ga0181591_106693851 46Ga0181568_100551031 47Ga0181568_106520702 48Ga0181568_114680211 49Ga0181564_107162541 50Ga0181575_103892611 51Ga0211726_101001192 52Ga0181597_100288041 53Ga0211506_10671972 54Ga0211647_102708652 55Ga0211652_102386162 56Ga0211653_101514292 57Ga0211576_105465051 58Ga0211574_102112461 59Ga0211643_101741242 60Ga0211643_105508212 61Ga0213860_103598401 62Ga0213865_103260702 63Ga0222714_102354721 64Ga0222714_102831911 65Ga0222713_101902671 66Ga0255774_100139866 67Ga0255774_100207315 68Ga0255743_105115412 69Ga0255760_105062742 70Ga0255751_101464912 71Ga0233438_100301221 72Ga0233438_100524621 73Ga0244775_105906452 74Ga0244775_112524812 75Ga0228628_11114502 76Ga0209194_11620712 77Ga0209136_10942272 78Ga0209198_12011751 79Ga0208428_11865451 80Ga0209095_10692602 81Ga0209771_11575962 82Ga0209771_11871622 83Ga0209600_11417112 84Ga0209631_101679141 85Ga0247599_10227312 86Ga0247599_11311672 87Ga0255156_10277902 88Ga0208950_10524631 89Ga0209711_1000656310 90Ga0209090_104643662 91Ga0228674_11117351 92Ga0228648_10637342 93Ga0257114_10186111 94Ga0185543_10040565 95Ga0307488_100449295 96Ga0307996_11309902 97Ga0308008_10035571 98Ga0308017_10458881 99Ga0308000_101920651 100Ga0310130_0286877_313_522
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 1DelMOSum2011_100675702 2JGI24005J15628_102014612 3Ga0078894_105699931 4Ga0075481_100955332 5Ga0075477_102058701 6Ga0098045_11361022 7Ga0098046_10211201 8Ga0099848_10969121 9Ga0102963_14415452 10Ga0102957_12758442 11Ga0115545_10721922 12Ga0115563_13308471 13Ga0115004_107159921 14Ga0129352_110395532 15Ga0181373_10182301 16Ga0181398_10672642 17Ga0181394_12621272 18Ga0181585_101726333 19Ga0181576_100375461 20Ga0181576_105923752 21Ga0180430_108977162 22Ga0181553_103396741 23Ga0211726_101001192 24Ga0181597_100288041 25Ga0211506_10671972 26Ga0211652_102386162 27Ga0211576_105465051 28Ga0211574_102112461 29Ga0213860_103598401 30Ga0222714_102831911 31Ga0255774_100207315 32Ga0244775_112524812 33Ga0209194_11620712 34Ga0209771_11871622 35Ga0185543_10040565 36Ga0307996_11309902
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1Ga0228674_11117351 2JGI24005J15628_102014612 3Ga0078894_105699931 4Ga0075477_102058701 5Ga0098046_10211201 6Ga0099848_10969121 7Ga0102963_14415452 8Ga0114994_106720222 9Ga0115563_13308471 10Ga0115004_107159921 11Ga0129352_110395532 12Ga0181389_10964092 13Ga0181394_12621272 14Ga0181584_104459672 15Ga0181584_107667202 16Ga0181580_106699822 17Ga0181585_101726333 18Ga0181572_101156923 19Ga0180430_108977162 20Ga0181553_103396741 21Ga0181568_114680211 22Ga0181564_107162541 23Ga0181575_103892611 24Ga0211726_101001192 25Ga0181597_100288041 26Ga0211506_10671972 27Ga0211647_102708652 28Ga0211652_102386162 29Ga0211653_101514292 30Ga0211576_105465051 31Ga0211574_102112461 32Ga0213860_103598401 33Ga0213865_103260702 34Ga0222714_102831911 35Ga0222713_101902671 36Ga0255774_100207315 37Ga0255760_105062742 38Ga0255751_101464912 39Ga0233438_100301221 40Ga0244775_105906452 41Ga0209194_11620712 42Ga0209136_10942272 43Ga0208428_11865451 44Ga0209771_11575962 45Ga0209771_11871622 46Ga0255156_10277902 47Ga0185543_10040565 48Ga0307996_11309902 49Ga0308000_101920651 50Ga0310130_0286877_313_522
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.00% β-sheet: 15.00% Coil/Unstructured: 68.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF07068	Gp23	8.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	40.00 %
Unclassified	root	N/A	60.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	8.00 %
Unclassified	root	N/A	60.00 %
Viruses	superkingdom	All Organisms → Viruses	32.00 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	7.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.00 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	13.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.00 %
Unclassified	root	N/A	60.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.00 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	13.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.00 %
Unclassified	root	N/A	60.00 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	7.00 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	7.00 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.00 %
Unclassified	root	N/A	60.00 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	13.00 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	7.00 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.00 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.00 %
Unclassified	root	N/A	60.00 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	7.00 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	13.00 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.00 %
Unclassified	root	N/A	60.00 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	7.00 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.00 %
Unclassified	root	N/A	60.00 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300024255\|Ga0233438_10030122	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3056	Open in IMG/M
(restricted) 3300024255\|Ga0233438_10052462	All Organisms → Viruses → Predicted Viral	2066	Open in IMG/M
3300000115\|DelMOSum2011_c10067570	All Organisms → Viruses → Predicted Viral	1307	Open in IMG/M
3300001589\|JGI24005J15628_10201461	Not Available	558	Open in IMG/M
3300003345\|JGI26080J50196_1081479	Not Available	568	Open in IMG/M
3300005662\|Ga0078894_10569993	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1011	Open in IMG/M
3300006868\|Ga0075481_10095533	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1107	Open in IMG/M
3300006869\|Ga0075477_10205870	Not Available	804	Open in IMG/M
3300006922\|Ga0098045_1136102	Not Available	570	Open in IMG/M
3300006990\|Ga0098046_1021120	All Organisms → Viruses → Predicted Viral	1646	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.00%
Terrestrial	Environmental → Terrestrial	1.00%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.00%
Freshwater	Environmental → Aquatic → Freshwater	3.00%
Marine	Environmental → Aquatic → Marine	93.00%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	13.00%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	1.00%
Inlet	Environmental → Aquatic → Marine → Inlet	3.00%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	35.00%
Lake	Environmental → Aquatic → Freshwater → Lake	1.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.00%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.00%
Oceanic	Environmental → Aquatic → Marine → Oceanic	8.00%
Pelagic	Environmental → Aquatic → Marine → Pelagic	8.00%
River	Environmental → Aquatic → Freshwater → River	1.00%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.00%
Strait	Environmental → Aquatic → Marine → Strait	6.00%
Unclassified	Environmental → Aquatic → Marine → Unclassified	18.00%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.00%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	29.00%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	1.00%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	18.00%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	13.00%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	8.00%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	8.00%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	6.00%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.00%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.00%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.00%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.00%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.00%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.00%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.00%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.00%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	1.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.00%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.00%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	1.00%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	1.00%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	9.00%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	8.00%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	5.00%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.00%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	1.00%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.00%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	8.00%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.00%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	2.00%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.00%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	29.00%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	7.00%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	6.00%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	2.00%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300003345	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental	Open in IMG/M
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2011_100675702	3300000115	Marine	MALKDLVKILEQVHEPDEYKLVVHDMNHGDYWIWKLKDGKMKDLDLEIRENRPEHARFDVFVNGQYI
JGI24005J15628_102014612	3300001589	Marine	MALKDLQDILKQVHEPDEYKLVVENMNHTIYWVWKLENAKLKDLDLNLRKYRPEHARFDIFINGQYILEDDYEFNSIGRDIHI
JGI26080J50196_10814791	3300003345	Marine	MALKDLQDILKQVHEPDEYSLVAENMNHSLYWVWKLENAKLKDLDLNLRNKRPEHARFDIFINGQYILE
Ga0078894_105699931	3300005662	Freshwater Lake	MIKELQKILQQVHEPNEYQLIHHDMDHPLYWIWKIENAKMKDLNLNLRQFRKEHARFDIFINGQYILEKDYIAEQSGKDFHIKFIKA
Ga0075481_100955332	3300006868	Aqueous	MAIKDLEQILRQVHEPDEYSLVPENMNHTLYWVWKLENGKLKDLDNNLRNNRPDHARFDIFINGQYILEDDYIFEG
Ga0075477_102058701	3300006869	Aqueous	MGVNELVKILEQVHEPDEFQLVAHDLDHEVFYIWKLENGKMKDLNLNLREFRKEHSRFDIFINGQYILERDYITEHSGKDFLVKF
Ga0098045_11361022	3300006922	Marine	MALKDLQKILQQVHEPDEYQLAVHDMNHQNYWIWKLENGKMKDLDLNLRQFRPEHARFDIFINGQYILEDDYVQEHSGKNLLVKFKK
Ga0098046_10211201	3300006990	Marine	MAIKDLANILAQVHEPDEYKLVAHDLEHPTYYIWKLDNVKMKDLKLFLRPFRKEHARFDIFINGQYILEKDYVTEHSGNTFFVK
Ga0099848_10969121	3300007541	Aqueous	MAIKDLQKILTQVHEPDEYQLVPHNLSHPLYWIWKVENASLKDLNSFLRPYRKEHARFDIFINGQY
Ga0102963_14415452	3300009001	Pond Water	MIKDLQKILKQVHDPNEYQLVSHDLNHPLYWIFKAENVKLKHLELKLREFRKEHARFDIFINGQYILEKDYIFE
Ga0102957_12758442	3300009027	Pond Water	MGVNELVKILEQVHEPDEFQLVAHDLDHAVFYIWKLENGKMKDLNLNLREFRKEHARF
Ga0102854_10193623	3300009058	Estuarine	MAIKDLAKILAQVHEPDEYKLVVHDLGHPIYYIWKLDNVKMKDLKLFLRPFRKEHARFDIFINGQYILEK
Ga0114994_106720222	3300009420	Marine	MALKDLENILKQVHEPDEYKLVVHDMNHSVYWIWKLENAKLKDLDKSLRVFRPEHARFDIFINGQYILENDYDFEIPGKDIWVKFKK
Ga0115545_10721922	3300009433	Pelagic Marine	MALKDLQKILQQVHEPDEYPLVAHDMNHEHYWVWKLENGKMKDLNLNLRQFRPEHARFDIFINGQY
Ga0115563_11192812	3300009442	Pelagic Marine	MALKDLQKILQQVHEPDEYPLVAHDMNHEHYWVWKLENGKMKDLDLNLRQFRPEHARFDIFINGQYILEDDYVQEHSGKNLLVK
Ga0115563_13308471	3300009442	Pelagic Marine	MAIKDLKKILKQVHEPDEYQLTPENMNHPLYWIWKLANGRMKDLDTLLRGFRPEHARFDIFINGQFIIEDDYLFEHSGKDFL
Ga0115554_11153161	3300009472	Pelagic Marine	MGVNQLVKILEQVHEPDEFQLVAHDLNHGLYYIWKLENAKMKDLNVNLREFRKEHARFDIFINGQYILEKDYITAHNGKDF
Ga0115004_107159921	3300009526	Marine	MALKDLQKILTQVHSPNEYQLVSHNPNHPLYWIWKIPNAKLSDLDLKLRKFRNDHARFDIFINGQYVLEKD
Ga0129352_110395532	3300012528	Aqueous	MAIKDLRKILEQVHEFDEYQLTPVNLTHPNYFIWKVPGVKMKDLNLNLRKNRKEHSRFDIFINGQFIL
Ga0182051_13362191	3300016727	Salt Marsh	MIKDLQKLLKQVHEPDEYQLVPHNMTHPLYWIWKIENGKMKDLDIKLRPFRNEHARFDIFINGQYI
Ga0182062_12545513	3300016751	Salt Marsh	MAIKDLQKILKQVHEPDEYQLIPHNMTHGLYWIWKLENAKMKDLNTYLREFRKEHARFDIFI
Ga0181373_10182301	3300017721	Marine	MAIKDLKKILKQVHEPDEYQLTPENMNHPLYWIWKLANGRMKDLDILLRDFRPEHARFD
Ga0181398_10672642	3300017725	Seawater	MAIKDLQKLLKQVHDPNEYDLVAHDLNHPIHWYFKVENAMMKDLDIKIRPFRKEHARFDI
Ga0181381_10292852	3300017726	Seawater	MAIKDLAKILAQVHEPDEYKLVAHDLTHPTYYIWKLDNVKMKDLKLFLRPFRKEHARFDIFINGQYILEKD
Ga0187222_10313101	3300017734	Seawater	MAIKDLAKILAQVHEPDEYKLVAHDLTHPTYYIWKLDNVKMKDLKLFLRPFRKEHARFDIFINGQYILEKDYITEHSGNTF
Ga0181389_10964092	3300017746	Seawater	MAIKDLVKILEQVHEPDEYQLTVQDLNHPIYWIWKLENGGMKDLDLNLRQFRKEHARFDIFINGQYVLE
Ga0181394_12621272	3300017776	Seawater	MGVNELKKILEQVHELNEFKLVVESLTHPLYYIWKLPDVKMKDLDIKLRQFRKEHARFDIFINGQYILEDDYIA
Ga0181423_12729891	3300017781	Seawater	MAIKDLQKLLKQVHDPNEYDLVAHDLNHPIHWYFKVENAMMKDLDIKIRPFRKEHARFDIFINGQY
Ga0181584_104459672	3300017949	Salt Marsh	MAIKDLKKILEQVHEPDEYRLVPHNMGHPTYWIWKLENAKMKDLDLLLRPFRKEHARFDIFING
Ga0181584_107667202	3300017949	Salt Marsh	MAIKDLKKILEQVHEPDEYRLVPHDLNHPLYWIWKIENGKLKDLNDFLRPYRKEHARFDIFI
Ga0181580_102365892	3300017956	Salt Marsh	MGVNELVKILEQVHEPDEFQLVAHDLDHEVFYIWKLENGKMKDLNLNLREFRKEHSR
Ga0181580_106699822	3300017956	Salt Marsh	MALKDLKKILEQVHEPDEYQLSVENLNHPDYWIWKLEDGKMKDLDLELREFRPEHARFDIFINGQYILE
Ga0181580_107197061	3300017956	Salt Marsh	MAIKDLKKILEQVHEPDEYQLIPHDLVHPLYWVWKIENAKMKDLNEFLRPFRKEHARFDIFINGQYI
Ga0181571_100164416	3300017957	Salt Marsh	MAIKDLKKILEQVHEPDEYQLIPHDLVHPLYWVWKIENAKMKDLNEFLRPFRKEHARFDIFINGQYILE
Ga0181590_102482481	3300017967	Salt Marsh	MGVNELVKILEQVHEPDEFQLVAHDLDHEVYYIWKLENGKMKDLNLNLREFRKEHARFDIFINGQYI
Ga0181585_101726333	3300017969	Salt Marsh	MAIKDLKKILEQVHEPDEYQLIPHDLVHPLYWVWKIENAKMKDLNEFLRPFRKEHARFDIFINGQYILEKDYIAE
Ga0181585_103246042	3300017969	Salt Marsh	MGVNELVKILEQVHEPDEFQLVAHDLDHEVFYIWKLENGKMKDLNLNLREFRKEHSRFDIFI
Ga0181576_100375461	3300017985	Salt Marsh	MIKDLQKILTEVHEPNEFDLISHDLNHPLYWIFKVENVKMKDLNLKLREFRKEHSRFDIFINGQFIL
Ga0181576_105923752	3300017985	Salt Marsh	MAIKDLVRILTQVHEPDEYRLSAHDMNHSLYWIWKLNDGKLKDLDLELRSFRPEHARFDIFINGQYVLEND
Ga0181572_101156923	3300018049	Salt Marsh	MAIKDLQKILKQVHEPDEYRLVPHDFVHPLYWIWKLENAKMKDLNSYLREFRKEHSRFDIFINGQYILERDYIFQQVN
Ga0181572_102592021	3300018049	Salt Marsh	MAIKDLKKILEQVHEPDEYRLVPHDLNHPLYWIWKIENGKLKDLNDFLRPYRKEHARFDI
Ga0180430_108977162	3300018065	Hypersaline Lake Sediment	MINELKKILDQVHEPDEYKMVSHDLNHPLYYIWKVDGVKLKDLNLELRDKRPEHARFDIFINGQYILEKD
Ga0181553_103396741	3300018416	Salt Marsh	MAISELRKILKQVHSPNEYTLGVHDLKHPRYWIFKVINGKLSDLDSKLRTFRNEHARFDIFINGQY
Ga0181591_106572142	3300018424	Salt Marsh	MGVNELVKILEQVHEPDEYQLIVHDLEHPNFYIWKIENVKMKDLNLNLREFRKEHARFDIFINGQYILEKDYITEHSGNVFY
Ga0181591_106693851	3300018424	Salt Marsh	MAIKDLKKILEQVHEPDEYQLIPHDLVHPLYWVWKIENAKMKDLNEFLRPFRKEHAGLIY
Ga0181568_100551031	3300018428	Salt Marsh	MAIKDLQKILKQVHEPDEYRLVPHDLVHPLYWIWKLENAKMKDLNSYLREFRKEHSRFDIFINGQYILERDYIFQQVNND
Ga0181568_106520702	3300018428	Salt Marsh	MAIKDLVRILKQVHEPDEYRLSAHDMNHSLYWIWKLNDGKLKDLDLELRSFRPEHARFDIFINGQYVLENDYIFEHS
Ga0181568_114680211	3300018428	Salt Marsh	MIKDLQKILKEVHEPNEFQLVSHDLNHPLYWVFKVENVKMKDLNLKLREFRKEHSRFDIFINGQFILEKDY
Ga0181564_107162541	3300018876	Salt Marsh	MAIKDLQKILKQVHEPDEYRLIPHNMVHPLYWIWKIENAKMKDLDSFLRPFRKEHARFDIFINGQYILEKDY
Ga0181575_103892611	3300020055	Salt Marsh	MGVNELVKILEQVHEPDEYQLIVHDLEHPNFYIWKIENVKMKDLNLNLREFRKEHARFDIFINGQYILEKDYITEHSGNVFYV
Ga0211726_101001192	3300020161	Freshwater	MINELNIILKQVHEPDEYTLIPHNLSHPSYWIWKLPNVKMKDLNINLRPFRKEHSRFDIFINGQYILERDYIFEQVNN
Ga0181597_100288041	3300020194	Salt Marsh	MINELKVILEQVHEPNEFRLISHNLTHGIYYIFKLENVKVKDLRLDLREYRKEHARFDVFVNGQYILERDYVTEYK
Ga0211506_10671972	3300020365	Marine	MALKDLVNILTQVHEPDEYQLTAHDMNHTSYWIWKLTDGKMKDLDINLRTFRPEHARFDIFINGQYILENDYVFEQQFHTEPISR
Ga0211647_102708652	3300020377	Marine	MAIKDLEQILKQVHEPDEFSLVPENMNHSTYWIWKLENGKLKDLDTNLRNNRPDHARFDIFINGQYILEDDYIFEGS
Ga0211652_102386162	3300020379	Marine	MAIKDLRKILKQVHEPNEFKLVTHDMSHPIYWIWKLENVKMKDLDIKLRQFRKEHARFDIFINGQYILEKDYTHEHVNNDLR
Ga0211653_101514292	3300020421	Marine	MALKDLVKILEQVHEPDEYKLVPHNMIHTQYWIWKLKDGKLKDLDLEIRQNRPEHARFDVFVNGQYVLEADYDFEV
Ga0211576_105465051	3300020438	Marine	MAIKDLQKLLKQVHDPNEYDLVAHDLNHPIHWYFKVENAMMKDLDIKIRPFRKEHARFDIFINGQYILEKDYIFEQVGKDLMV
Ga0211574_102112461	3300020446	Marine	MAIKDLKKILEQIHEPDEYQLSVENLNHPTYWIWKLEDGKMKDLDLELRALRPEHARFDIFVNGQYVLEQDYI
Ga0211643_101741242	3300020457	Marine	MAIKDLKKILEQIHEPDEYQLSVENLNHPTYWIWKLEDGKMKDLDLELRALRPEHARFDIFVNGQYVLEQD
Ga0211643_105508212	3300020457	Marine	MAIKDLEQILKQVHEPDEFSLVPENMNHSTYWIWKLENGKLKDLDINLRNNRPDHARFDIFINGQYILEDDYIFEGSGTD
Ga0213860_103598401	3300021368	Seawater	MIKDLQKLLKQVHDPNEIQLVSDNLEHPLYYIFKGENIKLKDLDIKLRPFRKEH
Ga0213865_103260702	3300021373	Seawater	MIKDLQKLLKQVHDPNEYQLISHNLVHPLYWIFKVENAKLKDLDIKLRPYRKEHARFDIFINGQYILEKDYLFEQKGKD
Ga0222714_102354721	3300021961	Estuarine Water	MINELNKILKQVHEPDEYRLIPHDMNHRNYWIWKIENVKMKDLNLNLRPFRKEHARFDIFINGQYILEKDYTVEQV
Ga0222714_102831911	3300021961	Estuarine Water	MIKELNKILKQVHEPNEFKLVAHNMTHPLYWIWKVENARMKNLNAFLRPLRVEHARFDIFINGQYILEKDYLFEQSGK
Ga0222713_101902671	3300021962	Estuarine Water	MINELNKILKQVHEPDEYRLIPHDMNHRNYWIWKIENVKMKDLNLNLRPFRKEHARFDIFINGQYILEKDYVFEQ
Ga0255774_100139866	3300023087	Salt Marsh	MAIKDLKKILEQVHEPDEYQLIPHDLVHPLYWVWKIENAKMKDLNEFLRPFRKEHARFD
Ga0255774_100207315	3300023087	Salt Marsh	MAIKDLKIILEQVHELNEYQLVPENMTHQLYWIWKLENAKMKDLKLFLRKYRKEHARFDIFINGQYVLERDYIFEQVGNDFH
Ga0255743_105115412	3300023110	Salt Marsh	MALKDLKKILEQVHEPDEYQLSVENLNHPDYWIWKLEDGKMKDLDLELREFRPEHARFDIFINGQYILEQDYIFEHS
Ga0255760_105062742	3300023115	Salt Marsh	MAIKDLVRILTQVHEPDEYRLSAHDMNHSLYWIWKLNDGKLKDLDLELRSFRPEHARFDIFINGQYVLENDYIFEHSGSKLLIK
Ga0255751_101464912	3300023116	Salt Marsh	MAIKDLQKILKQVHEPDEYQLIPHNMTHGLYWIWKLENAKMKDLNTYLREFRKEHARFDIFINGQYILERDYIKEQVNNDLHIKFKKS
(restricted) Ga0233438_100301221	3300024255	Seawater	MGVNQLVKILEQVHEPDEFQLVAHDLAHGLYYIWKLENAKMKDLNVNLREFRKEHARFDIFINGQYILEKDYITEH
(restricted) Ga0233438_100524621	3300024255	Seawater	MAIKDLKKILKQVHEPDEYQLTPENMNHPLYWIWKLANGRMKDLDILLRDFRPEHARFDIFINGQFIIEDDYLFEHSGKNFLIK
Ga0244775_105906452	3300024346	Estuarine	MIKELNKILLQVHEPNEFRLVPHNMSHPDFWIWKVENVKMKDLNLNLRPLRNEHARFDIFINGQYILEKDYP
Ga0244775_112524812	3300024346	Estuarine	MALKDLENILRQVHEPDEYKLVAHDMNHSVYWIWKLENAKLKDLDVNLRVFRPEHARFD
Ga0228628_11114502	3300024359	Seawater	MALKDLQKILQQVHEPDEYQLVAHDLTHEYYWIWKLENGKMKDLDLNLRQFRPEHARFDIFINGQYILEDDYIQEHSGKNLLVKF
Ga0209194_11620712	3300025632	Pelagic Marine	MALKDLVKILNQVHEPDEYNLVPHDMNHTSYWIWKLKDGKMKDLDLEIRENRPEHARFDVFVNGQYVLEDDYNFKVEGSNLLIQLKKSNF
Ga0209136_10942272	3300025636	Marine	MIKDLQKILKQVHEPDEYQLVPHNMEHPLYWIWKIENGKMKDLDSFLRPYRKEHARFDIFINGQFILERDYIAEQSG
Ga0209198_12011751	3300025640	Pelagic Marine	MALKDLQKILQQVHEPDEYPLVAHDMNHEHYWVWKLENGKMKDLNLNLRQFRPEHARFDIFINGQYILEDDYVQEHSGKNLLVK
Ga0208428_11865451	3300025653	Aqueous	MAIKDLEQILRQVHEPDEYSLVPENMNHTLYWVWKLENGKLKDLDNNLRNNRPDHARF
Ga0209095_10692602	3300025685	Pelagic Marine	MALKDLQKILQQVHEPDEYQLAVHDMNHEHYWVWKLENGKMKDLDLNLRQFRPEHARFDIFINGQY
Ga0209771_11575962	3300025701	Marine	MIKDLQKLLKQVHEPDEYQLVPHNMTHPLYWIWKIENGKMKDLDIKLRPFRNEHARFDIFINGQYILEKDYIF
Ga0209771_11871622	3300025701	Marine	MALKDLQKILKQVHSPNEYSMIPHDLEHHIYWIWKVENGKLSDLNLNLMKLRNEHARFDIFINGQYILEKD
Ga0209600_11417112	3300025821	Pelagic Marine	MAIKDLKKILKQVHEPDEYQLTPENMNHPLYWIWKLANGRMKDLDTLLRGFRPEHARFDIFINGQFIIED
Ga0209631_101679141	3300025890	Pelagic Marine	MGVNQLVKILEQVHEPDEFQLVAHDLNHGLYYIWKLENAKMKDLNVNLREFRKEHARFDIFINGQYILEKDYITAHN
Ga0247599_10227312	3300026470	Seawater	MALKDLQKILQQVHEPDEYQLVAHDLTHYYWIWKLENGKMKDLDLNLRQFRPEHARFDIFINGQYILEDDYIQEHSGKNLLVKF
Ga0247599_11311672	3300026470	Seawater	MAIKDLAKILAQVHEPDEYKLVAHDLTHPTYYIWKLDNVKMKDLKLFLRPFRKEHARFDIFINGQYIL
Ga0255156_10277902	3300026478	Freshwater	MIHELNKILKQVHEPDEYLLVPYDLNHQTYWIWKVDGVKMKDLNLNLRPLRKEHARFDIFINGQYILEK
Ga0208950_10524631	3300027413	Marine	MALKDLQKILQQVHEPDEYQLVAHDLTHEYYWIWKLENGKMKDLDLNLRQFRPEHARFDIFINGQYILEDDYIQEHSG
Ga0209711_1000656310	3300027788	Marine	MALKDLENILKQVHEPDEYKLVAHDMNHSVYWIWKLENAKLKDLDKNLRVFRPEHARFDIFINGQYILDNDYDFE
Ga0209090_104643662	3300027813	Marine	MALKDLENILKQVHEPDEYKLVAHDMNHSVYWIWKLENAKLKDLDKNLRVFRPEHARFDI
Ga0228674_11117351	3300028008	Seawater	MALKDLQKILQQVHEPDEYQLVAHDLTHEYYWIWKLENGKMKDLDLNLRQFRPEHARFDIFINGQYILEDDY
Ga0228648_10637342	3300028126	Seawater	MAIKDLQKLLKQVHDPNEYDLVAHDLNHPIHWYFKVENAMMKDLDIKIRPFRKEHARFDIFINGQYILEKDYIFEQVGND
Ga0257114_10186111	3300028196	Marine	MALKDLENILRQVHEPDEYKLVAHDMNHSVYWIWKLENAKLKDLDVNLRVFRPEHARFDI
Ga0185543_10040565	3300029318	Marine	MAIKDLKQILEQVHEFDEFRLSPFNMNHPTYWIWKLDNAKMKDLKSFLRPYRKEHARFDIFINGQFI
Ga0307488_100449295	3300031519	Sackhole Brine	MGVNQLVKILEQVHEPDEHRLVAHDLNHGLYYVWKLENAKMKDLNENLREFRKEHARFDIFINGQYILEKDYITDHNG
Ga0307996_11309902	3300031589	Marine	MALKDLEQILKQVHEPDEYKLIAHDMDHSLYWIWKLENAKLKDLDEKLRVFRPEHARFDIFINGQYILETDYVFEIPSRDI
Ga0308008_10035571	3300031687	Marine	MALKDLEQILKQVHEPDEYKLIAHDMDHSLYWIWKLENAKLKDLDEKLRVFRPEHARF
Ga0308017_10458881	3300031689	Marine	MALKDLENILKQVHEPDEYKLVAHDMNHSVYWIWKLENAKLKDLDVSLRGFRPEHARFDIFINGQYILEV
Ga0308000_101920651	3300031848	Marine	MALKDLKNILEQVHEPDEYKLVPHDMNHSLYWIWKLENSKLKDLDINLRSFRPEHARFDIFINGQYILEVDYVFEVPGKDIHISFKKA
Ga0310130_0286877_313_522	3300034073	Fracking Water	MIKELRNILQQVHEPDEYTLIPHNLEHPLYWIWKLPNSKMKDLNINLRPYRKEHARFDIFINGQYILEKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters