NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104614

Metagenome Family F104614

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104614
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 47 residues
Representative Sequence MGHLDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Number of Associated Samples 88
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 63.00 %
% of genes near scaffold ends (potentially truncated) 37.00 %
% of genes from short scaffolds (< 2000 bps) 78.00 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(21.000 % of family members)
Environment Ontology (ENVO) Unclassified
(56.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(85.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68
1DelMOSum2010_100479633
2JGI20154J14316_101215241
3JGI20160J14292_100460104
4JGI20157J14317_100120594
5GOS2224_10450312
6GOScombined01_1043022452
7Ga0065726_101876
8Ga0073579_16636652
9Ga0073579_16874042
10Ga0078893_105036815
11Ga0075481_100990301
12Ga0075477_100365491
13Ga0105744_11245732
14Ga0102957_10121311
15Ga0102854_11403172
16Ga0115566_105180051
17Ga0115550_11683861
18Ga0115550_12233982
19Ga0102815_103482101
20Ga0115551_11553112
21Ga0115545_12811432
22Ga0115546_11661182
23Ga0115553_11606522
24Ga0115558_10366684
25Ga0115554_13483152
26Ga0115555_12392492
27Ga0115564_101999352
28Ga0129345_13096242
29Ga0129342_12200871
30Ga0129327_100735023
31Ga0181565_106065292
32Ga0181565_107084552
33Ga0181552_104355382
34Ga0181607_107271192
35Ga0181581_101622821
36Ga0181590_110373002
37Ga0181587_100089153
38Ga0181600_102028012
39Ga0181606_102542932
40Ga0181572_104199742
41Ga0181572_106790671
42Ga0181561_103387001
43Ga0181559_107572151
44Ga0181558_104139212
45Ga0181591_101316101
46Ga0181564_105350112
47Ga0194024_10990362
48Ga0194022_10267461
49Ga0181595_102191221
50Ga0206125_100059092
51Ga0206128_10403002
52Ga0206128_13145452
53Ga0206124_100047318
54Ga0181599_12292362
55Ga0206129_100358946
56Ga0181597_104353751
57Ga0211504_10657641
58Ga0211678_102850071
59Ga0211554_103461553
60Ga0206126_101188933
61Ga0206677_100667633
62Ga0255771_10209461
63Ga0233426_100458551
64Ga0233426_101528112
65Ga0233426_102157042
66Ga0255784_101821311
67Ga0228668_10777712
68Ga0228675_10573782
69Ga0233444_103780741
70Ga0228629_11131141
71Ga0228632_10683812
72Ga0209138_11254932
73Ga0208004_10413982
74Ga0209197_10754432
75Ga0208428_11412101
76Ga0209196_10604852
77Ga0209775_10753251
78Ga0209406_10950382
79Ga0209715_10388844
80Ga0209715_10601011
81Ga0208427_10117261
82Ga0209199_12029872
83Ga0208543_11668532
84Ga0209119_11495362
85Ga0209534_103251412
86Ga0209932_10082852
87Ga0228647_10743512
88Ga0228647_11623181
89Ga0233395_11353261
90Ga0228607_10575942
91Ga0228674_10824102
92Ga0228674_12402092
93Ga0228646_10385892
94Ga0302114_100660933
95Ga0315322_107126731
96Ga0315316_108488332
97Ga0315330_100812824
98Ga0315315_101878264
99Ga0315315_103796701
100Ga0315315_108932442
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 41.18%    β-sheet: 0.00%    Coil/Unstructured: 58.82%
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5101520253035404550MGHLDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIESequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
100.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater
Marine
Marine
Seawater
Aqueous
Seawater
Marine Surface Water
Freshwater To Marine Saline Gradient
Estuary Water
Marine
Seawater
Estuarine
Salt Marsh
Marine
Pelagic Marine
Seawater
Pelagic Marine
Marine
Pond Water
Saline
4.0%6.0%11.0%3.0%4.0%7.0%21.0%3.0%17.0%6.0%5.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1004796333300000101MarineMAXCGXXNEYARKAXLIVTGEPAKINQKSSTAAKFYKHFXIE*
JGI20154J14316_1012152413300001348Pelagic MarineMGHLDRPPIMAMCGRLNEYARRACLIVTGEPAKINQKSSTAAKFYKHFAIE*
JGI20160J14292_1004601043300001349Pelagic MarineMAMCGRLNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE*
JGI20157J14317_1001205943300001352Pelagic MarineMGHLDRPPIMAIVASRNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE*
GOS2224_104503123300001952MarineMAICGHRNEYARKACLIVTGEPAKINQKSSTAAKFYKHFIIE*
GOScombined01_10430224523300002040MarineMAMCGRLNEYARKACLIVTGEPAKINQKSSTAAKFYKHFVIE*
Ga0065726_1018763300004369SalineMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIHKYFAIE*
Ga0073579_166366523300005239MarineMGHLDRPPIMAICGRLNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE*
Ga0073579_168740423300005239MarineMCHLDGSPIMAKCGHLNEYARKAYLIVTGEPGKINQKLSTAAKFYKHFAIE*
Ga0078893_1050368153300005837Marine Surface WaterMAMCGRLNEYARKACLIVTGEPDKINQKSSIAAKFYKHFAIE*
Ga0075481_1009903013300006868AqueousEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE*
Ga0075477_1003654913300006869AqueousMCHLDRPPIMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIHKYFAIE*
Ga0105744_112457323300007863Estuary WaterAWEIMCHLVGSPIMAKYGHLNEYARNAYLIVTGEPSKINQKLSTAANSCKHFAIE*
Ga0102957_101213113300009027Pond WaterMGHLDRPPIIAICGHLNEYARKASLIVTGESAKINQKSSTAAKFYKHFAIE
Ga0102854_114031723300009058EstuarineMCHLDESPIMAKYGYLNEYARKAYLIVTGEPGKINQKLSTAPNSHKHFAIE*
Ga0115566_1051800513300009071Pelagic MarineMGHLDRPPIMAMCGRLNEYARKACLIVTGEPDKINQKSSIAAKFYKHFAIE*
Ga0115550_116838613300009076Pelagic MarineIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE*
Ga0115550_122339823300009076Pelagic MarineMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIYKYFAIE*
Ga0102815_1034821013300009080EstuarineMSHLDRPPIMAKCGRRNEHARKACLIVTGEPAKINQKSSTAAKFYKHFAIE*
Ga0115551_115531123300009193Pelagic MarineMGHLDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE*
Ga0115545_128114323300009433Pelagic MarineMAKCGQRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE*
Ga0115546_116611823300009435Pelagic MarineMAMCGRLNEYARRACLIVTGEPTKINQKSSTAAKFYKHFAIE*
Ga0115553_116065223300009445Pelagic MarineMAREIMGHLDRPPIMAMCGRLNEYARKACLIVTGEPDKINQKSSIAAKFYKHFAIE*
Ga0115558_103666843300009449Pelagic MarineAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIYKYFAIE*
Ga0115554_134831523300009472Pelagic MarineMCHLDGSPIRAKYGHLNEYARKAYLIVTGEPGKINQILSTAPNSHKQFAIE*
Ga0115555_123924923300009476Pelagic MarineMCHLDGLPIMAKYGHLNEYARKAYLIVTGEPGKINQILSTAPNSHKQFAIE*
Ga0115564_1019993523300009505Pelagic MarineMGHLDRPPIMAKCGQRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE*
Ga0129345_130962423300010297Freshwater To Marine Saline GradientHLNEYARTAYLIVTGEPAKINQKSSTAAEIHKYFAIE*
Ga0129342_122008713300010299Freshwater To Marine Saline GradientDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAEIHKYFAIE*
Ga0129327_1007350233300013010Freshwater To Marine Saline GradientMGHLDRPPIMAMCGRLNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE*
Ga0181565_1060652923300017818Salt MarshMGHLDRPPIMAKCGQRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181565_1070845523300017818Salt MarshHLDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE
Ga0181552_1043553823300017824Salt MarshMGHLDRPPILAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYMHFAIE
Ga0181607_1072711923300017950Salt MarshMAKCGQRNEYARKASLIVTGKPAKINQKSSTAAKFYKHFAIE
Ga0181581_1016228213300017962Salt MarshRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181590_1103730023300017967Salt MarshHLDRPPIIAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181587_1000891533300017968Salt MarshMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181600_1020280123300018036Salt MarshMGHLDRPPIMAKCGQRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE
Ga0181606_1025429323300018048Salt MarshMGHLDRPPFMAICGHRNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181572_1041997423300018049Salt MarshMAKCGQRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181572_1067906713300018049Salt MarshPFMAICGHRNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181561_1033870013300018410Salt MarshMGHLDRPPIMAMCGRLNEYARKACLIVTGEPDKINQKSSIAAKFYKHFAIE
Ga0181559_1075721513300018415Salt MarshMGHLDRPPIMAMCGRLNEYARTACLIVTGEPDKINQKSSIAAKFYKHFAIE
Ga0181558_1041392123300018417Salt MarshMAMCGRLNEYARKACLIVTGEPDKINQKSSIAAKFYKHFAIE
Ga0181591_1013161013300018424Salt MarshMGHLDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181564_1053501123300018876Salt MarshPPFMAICGHRNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0194024_109903623300019765FreshwaterRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE
Ga0194022_102674613300019937FreshwaterRLPIMAMCGRLNEYARRACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181595_1021912213300020053Salt MarshMAREIMGHLDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE
Ga0206125_1000590923300020165SeawaterMGHLDRPPIMAMCGRLNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0206128_104030023300020166SeawaterMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIYKYFAIE
Ga0206128_131454523300020166SeawaterDRPPIMAKCGQRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0206124_1000473183300020175SeawaterMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIHKYFAIE
Ga0181599_122923623300020178Salt MarshMAKCGQRNEYARKASLIVTGGPAKINQKSSTAAKFYKHFVIE
Ga0206129_1003589463300020182SeawaterMGHLDRPPIMAMCGRLNEYARRACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0181597_1043537513300020194Salt MarshPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYMHFAIE
Ga0211504_106576413300020347MarineMCHLDESPIMARYGHLNEYARKAYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0211678_1028500713300020388MarineGSPTTAKYGHLNEYARRAYLIVTRETGKINQKLSTAPSSYKYFAID
Ga0211554_1034615533300020431MarineMCHLDRLPIMAQYGHLNECARQAYLIVTGEPAKINQKSSTAPNFYKHFAIE
Ga0206126_1011889333300020595SeawaterGQRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0206677_1006676333300021085SeawaterMCHLDESPIMAKYGHLNEYARKTYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0255771_102094613300022900Salt MarshMGHLDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE
(restricted) Ga0233426_1004585513300022920SeawaterMAMIGHLNEYAKTAYLIVTGEPAKINQKSSTAAEIYKYFAID
(restricted) Ga0233426_1015281123300022920SeawaterMCHLDGLPIMAKYGHLNEYARKAYLIVTGEPGKINQKLSTAPNSHKHFAIE
(restricted) Ga0233426_1021570423300022920SeawaterHLGGSPIMAKYGHLTEYVRKAYLIVTGEPGKINQKLSTAPNSYKHFGIE
Ga0255784_1018213113300023108Salt MarshHRNEYARTACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0228668_107777123300024180SeawaterMCHLVGSPIMAKYGHLNEYARNAYLIVTGEPSKINQKLSTAANYCKHFAIE
Ga0228675_105737823300024247SeawaterMCHLVGSPIMAKYGHLNEYARNAYLIVTGEPGKINQKLSTAPNSYKHFAIE
(restricted) Ga0233444_1037807413300024264SeawaterMCHLGGSPIMAKYGHLTEYVRKAYLIVTGEPGKINQKLSTAPNSYKHFGIE
Ga0228629_111311413300024296SeawaterMCHLVGSPIMAKYGHLNEYARKAYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0228632_106838123300024420SeawaterMCHLVGSPIMAKYGHLNEYARKTYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0209138_112549323300025617MarineGRLNEYARKACLIVTGEPDKINQKSSIAAKFYKHFAIE
Ga0208004_104139823300025630AqueousMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAKFYKHFVIE
Ga0209197_107544323300025637Pelagic MarinePPIMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIHKYFAIE
Ga0208428_114121013300025653AqueousMARKIMCHLDRPPIMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIHKYFAIE
Ga0209196_106048523300025654Pelagic MarineMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0209775_107532513300025663MarineMAKYGHLTEYVRKAYLIVTGEPGKINQKLSTAPNSYKHFG
Ga0209406_109503823300025694Pelagic MarineMGHLDRPPIMAMCGRLNEYARRACLIVTGEPTKINQKSSTAAKFYKHFAIE
Ga0209715_103888443300025699Pelagic MarineHLDRPPIMAMIGHLNEYARTAYLIVTGEPAKINQKSSTAAEIYKYFAIE
Ga0209715_106010113300025699Pelagic MarineDRPPIMAMCGRLNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0208427_101172613300025771AqueousMGHLDRPPIMAKCGHRNEYARKASLIVTGEPAKINQKSLTAAKFYKHFV
Ga0209199_120298723300025809Pelagic MarineMAMCGRLNEYARKACLIVTGEPAKINQKSSTAAKFYEHFAIE
Ga0208543_116685323300025810AqueousPIMAKCGHRNEYARKASLIVTGEPAKINQKSSTAAKFYKHFVIE
Ga0209119_114953623300025860Pelagic MarineMAMCGRLNEYARRACLIVTGEPAKINQKSSTAAKFYKHFAIE
Ga0209534_1032514123300025880Pelagic MarineNLAMAREIMCHLDGSPIRAKYGHLNKYARKAYLIVTGEPGKINQILSTALNSHKQFAIE
Ga0209932_100828523300026183Pond WaterMGHLDRPPIMAMCGRLNEYARKACLIVTGEPAKINQKSSTAAKFYKHFAIGALPLNVGVF
Ga0228647_107435123300026505SeawaterMCHLDESPIMARYGHLNEYARKSYLIVTGEPGKINQKLSTAPNSYKYFVI
Ga0228647_116231813300026505SeawaterIMCHLDESPIMARYGHLNEYARKSYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0233395_113532613300026511SeawaterMCHLVGSPIMAKYGHLNEYARNAYLIVTGEPSKINQKLSTAANS
Ga0228607_105759423300026517SeawaterMCHFDESPIMAKYGHLNEYARKAYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0228674_108241023300028008SeawaterMCHLDESPIMAKYGHLNEYARNAYLIVTGEPSKINQKLSTAANSCKHFAIE
Ga0228674_124020923300028008SeawaterHLDESPIMAKYGHLNEYDRKTYLIVTCEPGKINQKLSTAPNSYKHFAIE
Ga0228646_103858923300028280SeawaterMCHLVGSPIMAKYGHLNEYARKAYLIVTGEPGKINQKLSTAANSCKHFAIE
Ga0302114_1006609333300031621MarineMAMSGHLNEYARTVFLIVTAEPAKINQKSSTAAEIYKYFAIE
Ga0315322_1071267313300031766SeawaterMCHLDGSPIMAKYGHLTEYARKAYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0315316_1084883323300032011SeawaterMCHLVGSPIKAKYGHLNEYARNAYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0315330_1008128243300032047SeawaterMCHLDESPIMAKYGHLNEYARNAYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0315315_1018782643300032073SeawaterMCHLDGSPIMARYGHLNECAKKAYLIVTGESGKINQKLLTAPNSYKHFAID
Ga0315315_1037967013300032073SeawaterMAKYGHLNEYARKAYLIVTGEPGKINQKLSTAPNSYKHFAIE
Ga0315315_1089324423300032073SeawaterMCHLDESPIMAKYGHLNEYARKAYLIVTGEPGKINQKLSTAPNSYKHFAID


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