NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104605

Metagenome / Metatranscriptome Family F104605

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104605
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 48 residues
Representative Sequence PKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine
(22.000 % of family members)
Environment Ontology (ENVO) Unclassified
(49.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(59.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56
1M3P_100035814
2B570J29606_10002541
3JGI24768J34885_101949351
4JGI25908J49247_100047931
5JGI25910J50241_101646431
6JGI25922J50271_100989031
7JGI25926J51410_10728742
8JGI25925J51416_100282731
9JGI25928J51866_10621472
10Ga0068872_102367291
11Ga0049080_101758032
12Ga0049084_102144372
13Ga0075473_102747801
14Ga0102873_10079903
15Ga0102873_10927011
16Ga0102874_11954722
17Ga0102880_10878161
18Ga0102916_10120483
19Ga0102917_12904752
20Ga0102921_12004922
21Ga0102896_11705352
22Ga0102863_10384951
23Ga0102878_10162043
24Ga0102902_12368471
25Ga0102868_10186973
26Ga0102862_11043601
27Ga0105745_13206551
28Ga0105746_10467082
29Ga0105747_10032194
30Ga0102893_10534621
31Ga0108970_110095342
32Ga0114341_101145193
33Ga0114341_105355591
34Ga0114344_10063848
35Ga0114336_11193962
36Ga0114336_13347301
37Ga0114337_13490861
38Ga0102829_11271932
39Ga0102886_10304982
40Ga0102892_10964622
41Ga0114973_103989591
42Ga0102814_104932171
43Ga0114980_102140761
44Ga0114980_103266772
45Ga0114977_100090161
46Ga0114981_101256421
47Ga0114976_105459501
48Ga0114976_105693871
49Ga0151620_10117521
50Ga0157210_10362582
51Ga0157498_10007931
52Ga0164293_108114422
53Ga0164293_108572991
54Ga0164295_113237052
55Ga0187842_12015622
56Ga0211736_101717031
57Ga0208232_10137921
58Ga0207934_10193721
59Ga0222713_104957792
60Ga0222712_104215181
61Ga0214921_102080611
62Ga0256318_10334802
63Ga0255252_11120771
64Ga0256317_11116922
65Ga0208546_11066211
66Ga0256315_10574041
67Ga0208443_10374452
68Ga0255106_10314092
69Ga0255098_10009761
70Ga0255110_10115561
71Ga0255110_10641712
72Ga0255083_10810171
73Ga0255111_10172663
74Ga0255078_10876352
75Ga0208931_10140273
76Ga0255126_10135941
77Ga0208168_10368782
78Ga0208811_10323331
79Ga0255133_10990812
80Ga0209356_11373072
81Ga0208960_11241532
82Ga0208960_11589971
83Ga0209617_103853832
84Ga0209442_10594313
85Ga0209087_11858751
86Ga0209500_104583361
87Ga0209191_10315123
88Ga0255257_10121141
89Ga0247832_11775701
90Ga0247832_11887491
91Ga0315908_113852811
92Ga0315904_100234041
93Ga0334980_0044557_1_153
94Ga0334994_0100130_432_593
95Ga0334994_0542931_347_493
96Ga0334986_0098891_1160_1321
97Ga0335005_0019104_432_593
98Ga0334990_0139762_187_348
99Ga0334990_0505422_221_382
100Ga0335037_0130411_1238_1369
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.00%    β-sheet: 0.00%    Coil/Unstructured: 68.00%
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5101520253035404550PKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYKSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater
Freshwater And Sediment
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Freshwater, Surface Ice
Freshwater
Freshwater
Lotic
Freshwater
Freshwater
Aqueous
Estuary Water
Estuarine
Estuarine Water
Estuary
9.0%4.0%14.0%6.0%10.0%14.0%3.0%22.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
M3P_1000358143300000268LoticMPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
B570J29606_100025413300002304FreshwaterLLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDIIPARPAYK*
JGI24768J34885_1019493513300002447Freshwater And SedimentMPNPKTYEIYILLLKRNLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
JGI25908J49247_1000479313300003277Freshwater LakeMPNPKTYEIYILLLKCNLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
JGI25910J50241_1016464313300003388Freshwater LakeTYEIYILLLKCNLIKRKYQTVNPINAEGQKDNGAKAVDDISPARPAYK*
JGI25922J50271_1009890313300003413Freshwater LakeMHNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
JGI25926J51410_107287423300003490Freshwater LakeYTLLLKGNLIKRKYQIINPINAEGQNDNGAKAVDDINPARPAYK*
JGI25925J51416_1002827313300003497Freshwater LakeMPNPKTYEMYILLLKCDLVKRKYQIVSPINAEGQKDXGAKAVDDISPARPAYK*
JGI25928J51866_106214723300003616Freshwater LakeMPNPNTYEIYILLLKCNLIKRKYQTVNPINAEGQKDNGAKAVDDISPARPAYE*
Ga0068872_1023672913300005528Freshwater LakeKTPKPKIYETYTRLLKRILIKRKYQTVSPIKAEGQKEKGAKAVDAITPATPAYK*
Ga0049080_1017580323300005582Freshwater LenticMPNPKTYDIYILLLKRNLIRRKHQTVSPINAEGQKDNGAKAVDDISPARPAYK*
Ga0049084_1021443723300005585Freshwater LenticTYEIYILLLKCNLIKRKYQTVNPINAEGQKDNGAKAVDDISPARPAYE*
Ga0075473_1027478013300006875AqueousYTRLLKRILIKRKYQTVSPIKAEGQKEKGAKAVDAITPATPAYK*
Ga0102873_100799033300007545EstuarineLLKCNLIKRKYQIINPINAEGQKDNGAKAVDDINPARPAYK*
Ga0102873_109270113300007545EstuarineETYTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPATPAYK*
Ga0102874_119547223300007546EstuarineMYETYTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPATPAYK*
Ga0102880_108781613300007550EstuarineLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPATPAYK*
Ga0102916_101204833300007585EstuarineMPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKVVDD
Ga0102917_129047523300007590EstuarineNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK*
Ga0102921_120049223300007603EstuarineRMPNPKTYEIYILLLKCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK*
Ga0102896_117053523300007618EstuarineRLLKRILIKRKYQTVSPIKAEGHKEKGAKAVDAITPATPAYK*
Ga0102863_103849513300007622EstuarineTYTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPATPAYK*
Ga0102878_101620433300007624EstuarineNLIKRKYQIVNPINAEGQNDNGAKAVDDINPARPAYK*
Ga0102902_123684713300007644EstuarineMPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGKKDNGAKAVDDINPARPAYK*
Ga0102868_101869733300007653EstuarineIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
Ga0102862_110436013300007670EstuarineRILIKRKYQTVSPIKAEGQKDKGAKAVDAITPATPAYK*
Ga0105745_132065513300007972Estuary WaterNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGTKAVDDISPARPAYK*
Ga0105746_104670823300007973Estuary WaterMPNPKTYEIYILLLKCNLIKRKYQIINPINAEGQKDNGAKAVEDINPARPAYK*
Ga0105747_100321943300007974Estuary WaterILIKRKYQTVSPIKAEGHKEIGAKAVDAITPATPAYK*
Ga0102893_105346213300008052EstuarinePKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
Ga0108970_1100953423300008055EstuaryKRIPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGTKAVDDISPARPAYK*
Ga0114341_1011451933300008108Freshwater, PlanktonYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
Ga0114341_1053555913300008108Freshwater, PlanktonMHNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISP
Ga0114344_100638483300008111Freshwater, PlanktonPKPKMYERYTRLLKRILIKRKYQTVSPIKAEGQKDKGANAVDAITPATPAYK*
Ga0114336_111939623300008261Freshwater, PlanktonMPNPKTYEMYILLLKCDLVKRKYQIVSPINAEGQKDKGAKAVDDISPARPAYK*
Ga0114336_133473013300008261Freshwater, PlanktonPKIYETYTRLLKRILIKRKYQTVSPIKAEGQKDKGANAVDAITPATPAYK*
Ga0114337_134908613300008262Freshwater, PlanktonPKIYETYTRLLKRILIKRKYQTVSPIKAEGHKEKGAKAVDAITPASPAYK*
Ga0102829_112719323300009026EstuarineMPNPKTYEKYILLLKCNLIKRKYQNVSPINAEGQKDNGAKAVDDISPARPAYK*
Ga0102886_103049823300009052EstuarineMPNPKTYEIYILLLKCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK*
Ga0102892_109646223300009057EstuarineMPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDINPARPAYK*
Ga0114973_1039895913300009068Freshwater LakeEIYILLLKCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK*
Ga0102814_1049321713300009079EstuarineTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
Ga0114980_1021407613300009152Freshwater LakeMYETYTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAIAPAPPAYK*
Ga0114980_1032667723300009152Freshwater LakeMPNPKTYEIYILLLKCNLIKRKYQTVSPINADGQKDNGAKAVDDISPARPAYK*
Ga0114977_1000901613300009158Freshwater LakeTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPATPAYK*
Ga0114981_1012564213300009160Freshwater LakePKMYETYTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPATPAYK*
Ga0114976_1054595013300009184Freshwater LakeNKTPKPKMYETYTRLLNRILINRKYQIVSPIKAEGQKDKGAKALDAITPATPACK*
Ga0114976_1056938713300009184Freshwater LakePNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
Ga0151620_101175213300011268FreshwaterMHNPKTYEMYILLLKCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK*
Ga0157210_103625823300012665FreshwaterCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK*
Ga0157498_100079313300012666Freshwater, Surface IceMPNPKTYDIYILLLKRNLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK*
Ga0164293_1081144223300013004FreshwaterMHNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDSGAKAVDDISPARPPYK*
Ga0164293_1085729913300013004FreshwaterYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDIIPARPAYK*
Ga0164295_1132370523300013014FreshwaterPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVEDISPARPAYK*
Ga0187842_120156223300018790FreshwaterMPNPKTYEIYILLLKRNLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0211736_1017170313300020151FreshwaterMYETYTRFLNRILINRKYQIVSPIKAEGQKDKGAKAVDAI
Ga0208232_101379213300020527FreshwaterMPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0207934_101937213300020561FreshwaterMHNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDSGAKAVDDISPARPPYK
Ga0222713_1049577923300021962Estuarine WaterMHNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0222712_1042151813300021963Estuarine WaterPKPKMYETYTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDSITPATPANK
Ga0214921_1020806113300023174FreshwaterKRILIKRKYQTVSPIKAEGHKEKGAKAVDAITPATPAYK
Ga0256318_103348023300024485FreshwaterMPNPKTYEIYILLLKRDLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0255252_111207713300024853FreshwaterLKCNLIKRKYQTVSPINAEGQKYNGAKAVDDISPARPAYK
Ga0256317_111169223300024862FreshwaterLLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0208546_110662113300025585AqueousLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPATPAYK
Ga0256315_105740413300026417FreshwaterLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0208443_103744523300027084EstuarineLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0255106_103140923300027125FreshwaterMPNPKTYEIYILLLKCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK
Ga0255098_100097613300027126FreshwaterMYETYTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPATPAYK
Ga0255110_101155613300027132FreshwaterNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0255110_106417123300027132FreshwaterEIYILLLKRNLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0255083_108101713300027153FreshwaterYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDTSPARPAYK
Ga0255111_101726633300027154FreshwaterTYEIYILLLKRNLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0255078_108763523300027156FreshwaterGKRMPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0208931_101402733300027246EstuarineMPNPKTYEIYILLLKCNLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0255126_101359413300027295FreshwaterYILLLKCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK
Ga0208168_103687823300027305EstuarineKAYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0208811_103233313300027314EstuarinePKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0255133_109908123300027368FreshwaterLLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDTSPARPAYK
Ga0209356_113730723300027644Freshwater LakeMPNPKTYEMYILLLKCDLVKRKYQIVSPINAEGQKDKGAKAVDDISPARPAYK
Ga0208960_112415323300027649Freshwater LenticCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK
Ga0208960_115899713300027649Freshwater LenticTYEIYILLLKCNLIKRKYQTVNPINAEGQKDNGAKAVDDISPARPAYE
Ga0209617_1038538323300027720Freshwater And SedimentMPNPKTYEIYILLLKCDLIKRKYQIVNPINAEAQKDNGAKAVDDISPARPAYK
Ga0209442_105943133300027732Freshwater LakeLLLKCNLIKRKYQIINPINAEGQKDNGAKAVDDISPARPAYK
Ga0209087_118587513300027734Freshwater LakeMPNPKTYEIYILLLKCNLIKRKYQTVSPINADGQKDNGAKAVDDISPARPAYK
Ga0209500_1045833613300027782Freshwater LakeNLIKRKYQTVSPINADGQKDNGAKAVDDISPARPAYK
Ga0209191_103151233300027969Freshwater LakeMYETYTRLLNRILINRKYQIASPIKAEGQKDKGAKAVDAIAPAPPAYK
Ga0255257_101211413300028257FreshwaterMHNPKRYEMYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
(restricted) Ga0247832_117757013300028557FreshwaterYNLLLKFSLIRRKYQIVNPIKAEGQNDNGAKAVDDINPATPAYK
(restricted) Ga0247832_118874913300028557FreshwaterYNLLLKFSLIRRKYQIVNPIKAEGQNDNGAKAVDDINPATPACK
Ga0315908_1138528113300031786FreshwaterNPKTYEIYILLLKRNLIRRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0315904_1002340413300031951FreshwaterMYETYTRLLNRILINRKYQMVSPIKAEGQKDKGAKAVDAITPATPAYK
Ga0334980_0044557_1_1533300033816FreshwaterMHNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDISPARPA
Ga0334994_0100130_432_5933300033993FreshwaterMHNPKTYEMYILLLKCNLIKRKYQTISPINAEGQKDNGAKAVDDISPARPAYK
Ga0334994_0542931_347_4933300033993FreshwaterMYETYTRLLNRILINRKYQIVSPIKAEGQKDKGAKAVDAITPSTPAYK
Ga0334986_0098891_1160_13213300034012FreshwaterMHNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDSGAKAVDDISPARPAYK
Ga0335005_0019104_432_5933300034022FreshwaterMPNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDSGAKAVDDISPARPAYK
Ga0334990_0139762_187_3483300034068FreshwaterMPNPKTYEIYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDDIIPARPAYK
Ga0334990_0505422_221_3823300034068FreshwaterMPNPKTYEIYILLLKCNLTKRKYQTVSPINAEGQKDNGAKAVDDISPARPAYK
Ga0335037_0130411_1238_13693300034107FreshwaterMHNPKTYEMYILLLKCNLIKRKYQTVSPINAEGQKDNGAKAVDD


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