Metagenome / Metatranscriptome Family F104499

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F104499
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	88 residues
Representative Sequence	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHW
Number of Associated Samples	90
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (31.000 % of family members)
Environment Ontology (ENVO)	Unclassified (43.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (41.000 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
Powered by MSAViewer

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.48% β-sheet: 11.83% Coil/Unstructured: 52.69%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF00211	Guanylate_cyc	75.00
PF13519	VWA_2	2.00
PF00232	Glyco_hydro_1	1.00
PF01814	Hemerythrin	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	75.00
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	1.00

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.00%
Host-Associated	Host-Associated	1.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.00%
Plants	Host-Associated → Plants	1.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	60.00%
Leaf	Host-Associated → Plants → Leaf	1.00%
Marine	Environmental → Aquatic → Marine	39.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	6.00%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	32.00%
Lake	Environmental → Aquatic → Freshwater → Lake	27.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic	19.00%
River	Environmental → Aquatic → Freshwater → River	13.00%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	8.00%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	32.00%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	27.00%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	13.00%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	11.00%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.00%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	2.00%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	31.00%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.00%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	1.00%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	6.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	22.00%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	13.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	8.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.00%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.00%
Freshwater And Marine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Freshwater And Marine	1.00%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	1.00%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	9.00%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.00%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000883	Estuary microbial communities from the Columbia River - 5 PSU	Environmental	Open in IMG/M
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003404	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD	Environmental	Open in IMG/M
3300003499	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN	Environmental	Open in IMG/M
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300007546	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02	Environmental	Open in IMG/M
3300007547	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02	Environmental	Open in IMG/M
3300007549	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02	Environmental	Open in IMG/M

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
EsDRAFT_101467622	3300000883	Freshwater And Marine	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADSFGDL
B570J14230_101632861	3300001282	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAXFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGAGIHVWASLLEREAPHWFDDERGF
JGI25909J50240_10404591	3300003393	Freshwater Lake	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLE
JGI25909J50240_11077361	3300003393	Freshwater Lake	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAA
JGI25920J50251_100730452	3300003404	Freshwater Lake	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGIGIQVWASLLEREAP
JGI25930J51415_10213003	3300003499	Freshwater Lake	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGIGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADS
Ga0066179_100485253	3300004126	Freshwater Lake	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEW
Ga0049080_100301503	3300005582	Freshwater Lentic	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRF
Ga0102874_12469592	3300007546	Estuarine	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADSFGDLV
Ga0102875_11768941	3300007547	Estuarine	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYW
Ga0102879_11540721	3300007549	Estuarine	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWIEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADS
Ga0102880_10320201	3300007550	Estuarine	MTQPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGL
Ga0102881_11968341	3300007551	Estuarine	MTQPTPGYYLPAQFAIGPDGQTPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADSFGD
Ga0102913_11117762	3300007560	Estuarine	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVE
Ga0102914_10128823	3300007561	Estuarine	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQL
Ga0102917_10183901	3300007590	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQVWASLLER
Ga0102918_10705021	3300007593	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDCKWVEWYRDVVTAANGVGIQVWASLLEREAPHWFD
Ga0102918_12170912	3300007593	Estuarine	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPR
Ga0102919_11490161	3300007597	Estuarine	MTHPTPGFYLPAQFAVGPDGQAPFRTHFEEILNSYAIAGATQLRLGFDWSQ
Ga0102896_11453502	3300007618	Estuarine	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIHVWASLLEREAPHWFDDERGFSDAKNAG
Ga0102872_10271621	3300007621	Estuarine	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRF
Ga0102870_11226312	3300007625	Estuarine	MTVPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGVTQLRLGFDWS
Ga0102895_11276792	3300007629	Estuarine	MTEPTLGFYLPAQFAIGPNGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHW
Ga0102903_10098911	3300007630	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQVWASLLEREAPHWFD
Ga0102894_11375001	3300007632	Estuarine	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVITAANGVGIQVWASLLEREAPHWFDDERG
Ga0102865_10294683	3300007639	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYR
Ga0102910_10415821	3300007667	Estuarine	MTEPTPGFYLPAQFAVGPNGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYR
Ga0102899_10732971	3300007706	Estuarine	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGV
Ga0105749_11592661	3300007864	Estuary Water	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQV
Ga0105745_11380032	3300007972	Estuary Water	MTHPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVITAANGVGIQVWASLLEREAPHWFDDE
Ga0105746_10135931	3300007973	Estuary Water	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYW
Ga0105746_10865791	3300007973	Estuary Water	MTHPTPGFYLPAQFAVGPDGLAPFRTHFAEILNSYAIAGATQLRLGFDWSQLQPR
Ga0105747_10338901	3300007974	Estuary Water	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRF
Ga0105748_102549842	3300007992	Estuary Water	MTEPTLGFYLPAQFAIGPNGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNA
Ga0108970_113217251	3300008055	Estuary	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQP
Ga0102891_11257131	3300008950	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGI
Ga0102888_10619651	3300008995	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINA
Ga0102864_10598882	3300009051	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQVWASLLEREAPHWFDDER
Ga0102815_108114882	3300009080	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGVGIQVWASLLEREAPHWFDDERGYSDAKNAGRYWP
Ga0102890_10355431	3300010309	Estuarine	MTDPTPGYYLPAQFAIGPDGQTPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVVWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAAD
Ga0102883_12325411	3300010312	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQVWASLLEREAPHWF
Ga0153799_10580722	3300012012	Freshwater	MTEPTLGFYLPSQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDLSQLPPSTGVLDGKWVEWYLDVINAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADSFGD
Ga0164293_103442851	3300013004	Freshwater	MTEPTLGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADSFGDL
Ga0164293_104261931	3300013004	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFD
Ga0164292_110392351	3300013005	Freshwater	MTEPTLGFYLPSQFAIGPDGQAPFRAHFEEIINSYALAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLER
Ga0164292_110392361	3300013005	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAHFEEILNSYAIAGATQLRLGFVWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLER
Ga0211733_102711441	3300020160	Freshwater	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGF
Ga0211735_111005841	3300020162	Freshwater	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVMNAANG
Ga0208857_10105211	3300020542	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAHFEEILNSYAIAGATQLRLGFDWSQLQPRA
Ga0208853_10562621	3300020546	Freshwater	MTEPTLGFYLPSQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYR
Ga0208082_10312953	3300020563	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVV
Ga0207909_10164631	3300020572	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRANFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANGAGIHVWASLLEREAPHWFDDERGFS
Ga0208221_10285941	3300020574	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVMNAANGVGIQVWASLLEREAPHWFDDERGFSDAKN
Ga0208053_10078423	3300020575	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLD
Ga0214168_10466793	3300021140	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAHFEEILNSYAIAGATQLRLGFDWSQLQPRAGG
Ga0194041_100882391	3300021340	Anoxic Zone Freshwater	MTDPTPGYYLPAQFAVGPDGLAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGG
Ga0194045_11022201	3300021516	Anoxic Zone Freshwater	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEIINSYAIAGARQLRLGFDWSQLQPRAGGLDGKWIEWYRDVINAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEIAA
Ga0244775_108512401	3300024346	Estuarine	MTEPTPGFYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRD
Ga0255246_10610371	3300024863	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFEDERGFSD
Ga0256315_10555412	3300026417	Freshwater	MTEPTPGFYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGIGKSKIRV
Ga0255110_10064961	3300027132	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDD
Ga0255073_10579031	3300027135	Freshwater	MTEPTPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVIN
Ga0255104_10085893	3300027146	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWY
Ga0255113_11017392	3300027147	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGIGIQVWA
Ga0255083_10375261	3300027153	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQV
Ga0255078_10800371	3300027156	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQP
Ga0208166_10073831	3300027215	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRA
Ga0208928_10129763	3300027217	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADS
Ga0208025_10304712	3300027225	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVTAANGVGIQVWASLLEREAPHWFDD
Ga0208931_10300871	3300027246	Estuarine	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVG
Ga0255133_11020641	3300027368	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHW
Ga0255125_10820452	3300027534	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGIGIQ
Ga0255123_10252451	3300027589	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDTKNAGRYW
Ga0255120_10041614	3300027594	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFV
Ga0255119_11044131	3300027596	Freshwater	MTEPTPGFYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAAN
Ga0209355_12663271	3300027744	Freshwater Lake	MTEPNPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVITAANGVGIQVWASLLEREAPHWFDDE
Ga0209355_12687152	3300027744	Freshwater Lake	MTEPTLGFYLPSQFAIGPDGQAPFRAHFEEIINSYALAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIHVWASLLEREAPHWFDDERGFSDAKNAGR
Ga0208671_101401991	3300027757	Estuarine	MTEPTLGFYLPAQFAIGPNGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAAD
Ga0209353_101000331	3300027798	Freshwater Lake	MTEPTLGFYLPSQFAIGPDGQAPFRAHFEEIINSYALAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIHVWASLLEREAPHWFDDER
Ga0209358_100371483	3300027804	Freshwater Lake	MTEPTPGFYLPAQFAVGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWIEWYRDVINAANGVGVQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMTADSFGDLV
Ga0209230_105932401	3300027836	Freshwater And Sediment	MTEPTPGFYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAANSVGI
Ga0315907_112848121	3300031758	Freshwater	MTEPNPGFYLPAQFAVGPDGLAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVITAANGVGIQVCASLLEREAPHWFDDE
Ga0334980_0121711_865_1077	3300033816	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRANFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVI
Ga0334989_0345074_2_289	3300033984	Freshwater	MTEPTLGFYLPSQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDD
Ga0334989_0367199_544_747	3300033984	Freshwater	MTDLTPGFYLPSQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYR
Ga0334989_0402292_506_703	3300033984	Freshwater	MTQPTPGYYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEW
Ga0334989_0566229_1_339	3300033984	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRASGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRF
Ga0334989_0611481_317_520	3300033984	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYR
Ga0334979_0081258_1877_2047	3300033996	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAG
Ga0335002_0416108_2_187	3300034020	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRANFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGK
Ga0335004_0025246_4008_4307	3300034021	Freshwater	MTEPTLGFYLPSQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVMNAANGVGIHVWASLLEREAPHWFDDERGF
Ga0335005_0325901_545_904	3300034022	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHWFDDERGFSDAKNAGRYWPRFVEMAADS
Ga0334990_0602480_298_576	3300034068	Freshwater	MTDPTPGYYLPAQFAIGPDGQAPFRTHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGVGIQVWASLLEREAPHW
Ga0335022_0643309_216_527	3300034095	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVITAANGVGIQVWASLLEREAPHWFDDERGFSDAK
Ga0335025_0578174_2_226	3300034096	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVINAAN
Ga0335036_0286142_3_263	3300034106	Freshwater	MTQPFSGFYLPSKFAVGDDGQAPFRAHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVMNAANGVGIQVWASLLE
Ga0335068_0232240_1_303	3300034116	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAANGIGIQVWASLLEREAPHWFDDERGFS
Ga0335017_0291230_752_910	3300034167	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQ
Ga0335061_0303756_2_250	3300034168	Freshwater	MTQTTPGYYLPAQFAIGPDGQAPFRTHFEEILNSYAIAGATQLRLGFDWSQLQPRAGGLDGKWIEWYRDVINAANGVGIEVWA
Ga0334997_0796153_157_384	3300034280	Freshwater	MTDPTPGFYLPAQFAIGPDGQAPFRAHFEEIINSYAIAGATQLRLGFDWSQLQPRAGGLDGKWVEWYRDVVNAAN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104499

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences