NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104488

Metagenome / Metatranscriptome Family F104488

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104488
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 58 residues
Representative Sequence MLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Number of Associated Samples 71
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 32.00 %
% of genes near scaffold ends (potentially truncated) 50.00 %
% of genes from short scaffolds (< 2000 bps) 71.00 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (76.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(68.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(77.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 39.29%    β-sheet: 7.14%    Coil/Unstructured: 53.57%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF03992ABM 18.00
PF02777Sod_Fe_C 8.00
PF00355Rieske 7.00
PF12705PDDEXK_1 3.00
PF08811DUF1800 2.00
PF07394DUF1501 2.00
PF04832SOUL 2.00
PF00145DNA_methylase 1.00
PF01555N6_N4_Mtase 1.00
PF00498FHA 1.00
PF04313HSDR_N 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0605Superoxide dismutaseInorganic ion transport and metabolism [P] 8.00
COG5267Uncharacterized conserved protein, DUF1800 familyFunction unknown [S] 2.00
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 1.00
COG0863DNA modification methylaseReplication, recombination and repair [L] 1.00
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 1.00
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A76.00 %
All OrganismsrootAll Organisms24.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002161|JGI24766J26685_10006748Not Available3202Open in IMG/M
3300003499|JGI25930J51415_1050742Not Available714Open in IMG/M
3300003986|Ga0063233_10139463Not Available732Open in IMG/M
3300005525|Ga0068877_10038166All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Nanopelagicus → Candidatus Nanopelagicus hibericus3240Open in IMG/M
3300005525|Ga0068877_10428725Not Available741Open in IMG/M
3300005527|Ga0068876_10021108Not Available4119Open in IMG/M
3300005527|Ga0068876_10355874Not Available822Open in IMG/M
3300005528|Ga0068872_10473540Not Available674Open in IMG/M
3300005585|Ga0049084_10170446Not Available753Open in IMG/M
3300005805|Ga0079957_1106700Not Available1513Open in IMG/M
3300007620|Ga0102871_1238125Not Available501Open in IMG/M
3300007639|Ga0102865_1091282Not Available910Open in IMG/M
3300008055|Ga0108970_11790403Not Available1168Open in IMG/M
3300008108|Ga0114341_10036639All Organisms → cellular organisms → Bacteria3299Open in IMG/M
3300008111|Ga0114344_1198860Not Available637Open in IMG/M
3300008259|Ga0114841_1176388Not Available808Open in IMG/M
3300008261|Ga0114336_1207497Not Available817Open in IMG/M
3300008261|Ga0114336_1318763Not Available575Open in IMG/M
3300008262|Ga0114337_1203481Not Available804Open in IMG/M
3300008262|Ga0114337_1258390Not Available659Open in IMG/M
3300010293|Ga0116204_1161836Not Available741Open in IMG/M
3300010293|Ga0116204_1172994Not Available710Open in IMG/M
3300010354|Ga0129333_10101673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Luna cluster → Luna-1 subcluster → Aquiluna → Aquiluna borgnonia2656Open in IMG/M
3300011183|Ga0136713_1042617Not Available596Open in IMG/M
3300012006|Ga0119955_1166267Not Available570Open in IMG/M
3300013087|Ga0163212_1116499Not Available853Open in IMG/M
(restricted) 3300013131|Ga0172373_10033964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4809Open in IMG/M
(restricted) 3300013131|Ga0172373_10708572Not Available593Open in IMG/M
(restricted) 3300013131|Ga0172373_10753771Not Available571Open in IMG/M
(restricted) 3300013132|Ga0172372_10038761All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4865Open in IMG/M
(restricted) 3300013138|Ga0172371_10375839Not Available1079Open in IMG/M
(restricted) 3300014720|Ga0172376_10019155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6329Open in IMG/M
(restricted) 3300014720|Ga0172376_10366268Not Available838Open in IMG/M
3300014819|Ga0119954_1035113Not Available919Open in IMG/M
3300020109|Ga0194112_10040494All Organisms → cellular organisms → Bacteria4813Open in IMG/M
3300020109|Ga0194112_10100067Not Available2604Open in IMG/M
3300020162|Ga0211735_10194951All Organisms → cellular organisms → Bacteria → Terrabacteria group1624Open in IMG/M
3300020179|Ga0194134_10241976Not Available745Open in IMG/M
3300020183|Ga0194115_10003315Not Available18233Open in IMG/M
3300020190|Ga0194118_10425822Not Available662Open in IMG/M
3300020196|Ga0194124_10061796Not Available2280Open in IMG/M
3300020196|Ga0194124_10271813Not Available832Open in IMG/M
3300020196|Ga0194124_10437324Not Available588Open in IMG/M
3300020214|Ga0194132_10061749Not Available2688Open in IMG/M
3300020220|Ga0194119_10499230Not Available767Open in IMG/M
3300020221|Ga0194127_10291552Not Available1106Open in IMG/M
3300020221|Ga0194127_10571285Not Available723Open in IMG/M
3300020222|Ga0194125_10281095Not Available1116Open in IMG/M
3300020222|Ga0194125_10601557Not Available655Open in IMG/M
3300020222|Ga0194125_10670222Not Available608Open in IMG/M
3300020603|Ga0194126_10056277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium BACL4 MAG-120820-bin233594Open in IMG/M
3300021092|Ga0194122_10031538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium BACL4 MAG-120820-bin233473Open in IMG/M
3300021093|Ga0194123_10137671Not Available1337Open in IMG/M
3300021093|Ga0194123_10187108Not Available1073Open in IMG/M
3300021376|Ga0194130_10037683All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium BACL4 MAG-120820-bin233645Open in IMG/M
3300021376|Ga0194130_10308029Not Available876Open in IMG/M
3300021376|Ga0194130_10447590Not Available673Open in IMG/M
3300021424|Ga0194117_10014164Not Available5787Open in IMG/M
3300021424|Ga0194117_10025939All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium BACL4 MAG-120820-bin233756Open in IMG/M
3300021424|Ga0194117_10313561Not Available737Open in IMG/M
3300021962|Ga0222713_10256080Not Available1137Open in IMG/M
3300022752|Ga0214917_10025476Not Available4645Open in IMG/M
3300022752|Ga0214917_10035373All Organisms → cellular organisms → Bacteria3648Open in IMG/M
3300022752|Ga0214917_10326893Not Available667Open in IMG/M
3300022752|Ga0214917_10357609Not Available621Open in IMG/M
3300022752|Ga0214917_10418381Not Available545Open in IMG/M
3300023179|Ga0214923_10215173Not Available1117Open in IMG/M
3300023179|Ga0214923_10359776All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Luna cluster → Luna-1 subcluster → Aquiluna → Aquiluna borgnonia763Open in IMG/M
3300023184|Ga0214919_10222492Not Available1387Open in IMG/M
3300024534|Ga0256357_1002954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Luna cluster → Luna-1 subcluster → Aquiluna → Aquiluna borgnonia2936Open in IMG/M
3300024535|Ga0255303_1089830Not Available605Open in IMG/M
3300024542|Ga0256350_1078071Not Available590Open in IMG/M
3300024546|Ga0256356_1023229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Luna cluster → Luna-1 subcluster → Aquiluna → Aquiluna borgnonia1131Open in IMG/M
3300024553|Ga0255301_1019040Not Available1249Open in IMG/M
3300025115|Ga0209835_1098594Not Available742Open in IMG/M
3300025283|Ga0208048_1123769Not Available527Open in IMG/M
3300027793|Ga0209972_10085662Not Available1613Open in IMG/M
3300027892|Ga0209550_10122517Not Available1902Open in IMG/M
3300028067|Ga0255192_1009677Not Available1505Open in IMG/M
3300028086|Ga0255201_1026851Not Available938Open in IMG/M
3300028258|Ga0255214_1012974Not Available1510Open in IMG/M
(restricted) 3300028571|Ga0247844_1140422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1006Open in IMG/M
3300031758|Ga0315907_10494157Not Available969Open in IMG/M
3300031784|Ga0315899_10056251All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4108Open in IMG/M
3300031786|Ga0315908_10270385All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1419Open in IMG/M
3300031951|Ga0315904_10183259Not Available2076Open in IMG/M
3300031963|Ga0315901_10008392Not Available12007Open in IMG/M
3300031963|Ga0315901_10099141All Organisms → cellular organisms → Bacteria2697Open in IMG/M
3300031963|Ga0315901_10149498Not Available2085Open in IMG/M
3300032050|Ga0315906_10047292All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4511Open in IMG/M
3300032050|Ga0315906_10329302Not Available1361Open in IMG/M
3300032050|Ga0315906_10661694Not Available847Open in IMG/M
3300032116|Ga0315903_10089621All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2971Open in IMG/M
3300034019|Ga0334998_0497860Not Available680Open in IMG/M
3300034021|Ga0335004_0391825Not Available789Open in IMG/M
3300034023|Ga0335021_0477926Not Available637Open in IMG/M
3300034072|Ga0310127_230118Not Available670Open in IMG/M
3300034073|Ga0310130_0081227All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300034073|Ga0310130_0094723All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Luna cluster → Luna-1 subcluster → Aquiluna → Aquiluna borgnonia895Open in IMG/M
3300034096|Ga0335025_0070830Not Available2204Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake25.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater22.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater11.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake9.00%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater8.00%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton7.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater3.00%
Anoxic Lake WaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water3.00%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water3.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.00%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment1.00%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater1.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.00%
EstuaryHost-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002161Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USAEnvironmentalOpen in IMG/M
3300003499Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DNEnvironmentalOpen in IMG/M
3300003986Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (v2)EnvironmentalOpen in IMG/M
3300005525Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaGEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300007620Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02EnvironmentalOpen in IMG/M
3300007639Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02EnvironmentalOpen in IMG/M
3300008055Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393Host-AssociatedOpen in IMG/M
3300008108Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NAEnvironmentalOpen in IMG/M
3300008111Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NAEnvironmentalOpen in IMG/M
3300008259Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NAEnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300008262Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NAEnvironmentalOpen in IMG/M
3300010293Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300011183Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO22cm metaGEnvironmentalOpen in IMG/M
3300012006Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101BEnvironmentalOpen in IMG/M
3300013087Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30LEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013138 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12mEnvironmentalOpen in IMG/M
3300014720 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35mEnvironmentalOpen in IMG/M
3300014819Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011AEnvironmentalOpen in IMG/M
3300020109Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400mEnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020190Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surfaceEnvironmentalOpen in IMG/M
3300020196Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0mEnvironmentalOpen in IMG/M
3300020214Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80mEnvironmentalOpen in IMG/M
3300020220Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100mEnvironmentalOpen in IMG/M
3300020221Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100mEnvironmentalOpen in IMG/M
3300020222Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250mEnvironmentalOpen in IMG/M
3300020603Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150mEnvironmentalOpen in IMG/M
3300021092Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10mEnvironmentalOpen in IMG/M
3300021093Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surfaceEnvironmentalOpen in IMG/M
3300021376Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surfaceEnvironmentalOpen in IMG/M
3300021424Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surfaceEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024534Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024535Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024542Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024546Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024553Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025115Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025283Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)EnvironmentalOpen in IMG/M
3300027793Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300028067Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8hEnvironmentalOpen in IMG/M
3300028086Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepC_8hEnvironmentalOpen in IMG/M
3300028258Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8dEnvironmentalOpen in IMG/M
3300028571 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031786Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300034019Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049EnvironmentalOpen in IMG/M
3300034021Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034072Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-AEnvironmentalOpen in IMG/M
3300034073Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XLEnvironmentalOpen in IMG/M
3300034096Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24766J26685_1000674813300002161Freshwater And SedimentIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
JGI25930J51415_105074213300003499Freshwater LakeMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0063233_1013946313300003986Freshwater LakeVRVALIELAMLISSNGAKDYGIHRKVIIVRYLPFLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0068877_1003816653300005525Freshwater LakeVALIELAMLIGSNGAKDHGIHRKVIIVRYLPYLGDNWDVELVIVAVAILVILLVAKNGSSKRK*
Ga0068877_1042872523300005525Freshwater LakeLIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0068876_1002110833300005527Freshwater LakeMGISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0068876_1035587423300005527Freshwater LakeLRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK*
Ga0068872_1047354023300005528Freshwater LakeGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0049084_1017044613300005585Freshwater LenticRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWGMELVIVAVAILVILLVAKNGSSKRK*
Ga0079957_110670013300005805LakeKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0102871_123812513300007620EstuarineVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK*
Ga0102865_109128233300007639EstuarineVALIELAMLISSNGAKNHGIHRKVIIVRYLLYLGDNRDMELVIVAVAILVILLVAKNGSSKRK*
Ga0108970_1179040333300008055EstuaryVALIELAMLISSNGAKDHGIHRKVMIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0114341_1003663933300008108Freshwater, PlanktonVALIELIMGISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0114344_119886013300008111Freshwater, PlanktonSSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0114841_117638823300008259Freshwater, PlanktonVALIELIMGISSNGAKDHGIHRKVIIVQYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0114336_120749713300008261Freshwater, PlanktonVALIELAMLIGSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0114336_131876323300008261Freshwater, PlanktonSSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAIFVILLVAKNGSSKRK*
Ga0114337_120348123300008262Freshwater, PlanktonVQSLSGSNGAKDHGIHRKVIVVRYLPYLGDNWDMELVIVAVAILVILLVAKNASSKRK*
Ga0114337_125839023300008262Freshwater, PlanktonVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDVELVIVAVAILVILLVAKNGSSKRK*
Ga0116204_116183623300010293Anoxic Lake WaterSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK*
Ga0116204_117299423300010293Anoxic Lake WaterMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK*
Ga0129333_1010167323300010354Freshwater To Marine Saline GradientMISSSGAEDDCIHGSVMIELKLSLLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0136713_104261723300011183FreshwaterVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK*
Ga0119955_116626723300012006FreshwaterMISSSGAEDDCIHGSVIIDLNLINLGDNWAMELIIVAVAILVILLVAKNGSSKRK*
Ga0163212_111649913300013087FreshwaterAKDHGIHRRVIIVRYLPYLGDNWDMELLIVAVAILVILLVAKNGSSKRK*
(restricted) Ga0172373_1003396413300013131FreshwaterDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK*
(restricted) Ga0172373_1070857213300013131FreshwaterDHGIHRKVIIVRYLPYLGDNCDMELVIVAVAILVILLVAKNGSSKRK*
(restricted) Ga0172373_1075377113300013131FreshwaterRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNRDMELVIVAVAILVILLVAKNGSSKRK*
(restricted) Ga0172372_1003876153300013132FreshwaterMAVVRDIARSSLYYLRHILRVAFIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK*
(restricted) Ga0172371_1037583933300013138FreshwaterNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVIILVAKNGSSKRK*
(restricted) Ga0172376_1001915513300014720FreshwaterSSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK*
(restricted) Ga0172376_1036626813300014720FreshwaterVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK*
Ga0119954_103511323300014819FreshwaterMISSSGAEDDCIHGSVMIDLNLINLGDNWAMELIIVAVAILVILLVAKNGSSKRK*
Ga0194112_1004049453300020109Freshwater LakeMLISSNGAKYHGIHRKVIIVRFLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194112_1010006733300020109Freshwater LakeMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0211735_1019495123300020162FreshwaterMLISSNGAKDHGIHRKVIIVRYLPFLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194134_1024197613300020179Freshwater LakeMLISSNGAKDHGIHRRVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194115_1000331523300020183Freshwater LakeMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194118_1042582223300020190Freshwater LakeELAMLISSNGAKDHGIHRRVIIVRYLPYLGDNRDMELVIVAVAILVILLVAKNGSSKRK
Ga0194124_1006179633300020196Freshwater LakeHLLRVALIELAMLISSNGAKYHGIHRKVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0194124_1027181313300020196Freshwater LakeVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194124_1043732413300020196Freshwater LakeAMLISSNGAKDHVIHRRVILVPYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194132_1006174913300020214Freshwater LakeKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0194119_1049923043300020220Freshwater LakeIELAMLISSNGAKDHGIHRRVILVPYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194127_1029155213300020221Freshwater LakeLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0194127_1057128513300020221Freshwater LakeIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK
Ga0194125_1028109513300020222Freshwater LakeILRVALIEPAMLISSNGAKDHGIHRRVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194125_1060155713300020222Freshwater LakeMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK
Ga0194125_1067022213300020222Freshwater LakeMLISSNGAKDHGKHRRVIIVRYLPYLGDNWAMELIIVAVAILVILLVAKN
Ga0194126_1005627753300020603Freshwater LakeELAMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0194122_1003153853300021092Freshwater LakeAMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0194123_1013767123300021093Freshwater LakeVALIELAMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELIIVAVAILVILLVAKNGSSKRK
Ga0194123_1018710813300021093Freshwater LakeMERKITAYIGRVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194130_1003768353300021376Freshwater LakeRVALIELAMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0194130_1030802913300021376Freshwater LakeRVALIELAMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELIIVAVAILVILLVAKNGSSKRK
Ga0194130_1044759023300021376Freshwater LakeMLIGSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194117_1001416423300021424Freshwater LakeVALIELAMLIGSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0194117_1002593953300021424Freshwater LakeVALIELAMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0194117_1031356143300021424Freshwater LakeLISSNGAKDHGIHRRVIIVPYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0222713_1025608023300021962Estuarine WaterMLIGSNGAKDHGIHRKVIIVQYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0214917_1002547653300022752FreshwaterMISSSGAEDDCIHGSVMIDLNLINLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0214917_1003537313300022752FreshwaterMISSSGAEDDCIHGSVIIDLNLINLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0214917_1032689313300022752FreshwaterMISSTRAEDDCIHGSVMIDLKLINLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0214917_1035760923300022752FreshwaterMISSSRAEDDCIHGSVMIDLNLINLGDNWAMELVIVAVAILVILLVAKNGSSKSK
Ga0214917_1041838133300022752FreshwaterMISSSGAEDDCIHGSVIIDLNLINLGDNWAMELIIVAVAILVILLVAKNGSSKRK
Ga0214923_1021517313300023179FreshwaterMISSSGAEDDCIHGSVMIDLNLINLGDNWDMELIIVAVAILVILLVA
Ga0214923_1035977623300023179FreshwaterMISSSGAEDDCIHSSVMIDLNLINLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0214919_1022249223300023184FreshwaterMISSSRAEDDCIHGSVMIDLNLINLGDNWDMELIIVAVAILVILLVAKNGSSKRK
Ga0256357_100295413300024534FreshwaterMIRSSRAEDDCIHGSVMIELKLSLLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0255303_108983013300024535FreshwaterMISSSGAEDDCIHGSVMIELKLSLLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0256350_107807113300024542FreshwaterSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0256356_102322923300024546FreshwaterMISSSGAEDDCIHGSVIIELKLSLLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0255301_101904013300024553FreshwaterMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKN
Ga0209835_109859413300025115Anoxic Lake WaterSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0208048_112376913300025283FreshwaterLAMLISSNGAKDHGIHRRVIIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0209972_1008566213300027793Freshwater LakeRHLLRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK
Ga0209550_1012251723300027892Freshwater LakeMLISSNRAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0255192_100967733300028067FreshwaterFLHLLRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0255201_102685113300028086FreshwaterLRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0255214_101297413300028258FreshwaterMRSSSGAEDDCIHGSVMIELKLSLLGDNWDMELVIVAVTILVILLVAKNG
(restricted) Ga0247844_114042233300028571FreshwaterFRVALIELAMLISSNGAKDHGVHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0315907_1049415713300031758FreshwaterLAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK
Ga0315899_1005625173300031784FreshwaterAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0315908_1027038533300031786FreshwaterVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK
Ga0315904_1018325933300031951FreshwaterVQSLSGSNGAKDHGIHRKIIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0315901_1000839263300031963FreshwaterMLISSNGAKDHGIHKKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0315901_1009914113300031963FreshwaterMLISSNGAKDHGIHRKVMIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK
Ga0315901_1014949823300031963FreshwaterSSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0315906_1004729213300032050FreshwaterRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK
Ga0315906_1032930213300032050FreshwaterMLISSNGAKDHGIHRKIIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0315906_1066169413300032050FreshwaterIFRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDVELVIVAVAILVILLVAKNGSSKRK
Ga0315903_1008962143300032116FreshwaterRHIFRVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWVMELVIVAVAILVILLVAKNGSSKRK
Ga0334998_0497860_150_3413300034019FreshwaterVALIELAMLVSPNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAAAILVILLVAKNGSSKRK
Ga0335004_0391825_182_3733300034021FreshwaterVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAAAILVILLVAKNGSSKRK
Ga0335021_0477926_49_2403300034023FreshwaterVALIELAMLISSNGAKDHGIHRKVIIVRYLPYLGDNWNMELVIVAVAILVILLVAKNGSSKRK
Ga0310127_230118_218_3973300034072Fracking WaterVRRFKDSSKGAKDHGIHRKVIVVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0310130_0081227_530_7213300034073Fracking WaterVALIELIMGISSNGAKDHGIHRKVIIVRYLPYLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0310130_0094723_729_8933300034073Fracking WaterRSSSGAEDDCVHGSVIIELNLSHLGDNWDMELVIVAVAILVILLVAKNGSSKRK
Ga0335025_0070830_4_1953300034096FreshwaterVALIELAMLIGSNGAKDHGIHRKVMIVRYLPYLGDNWAMELVIVAVAILVILLVAKNGSSKRK


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