NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F104475

Metagenome Family F104475

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104475
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 40 residues
Representative Sequence MTLNGVMAVILRYFSEFGSFRGALRKVVEDIPKLSAKEM
Number of Associated Samples 15
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.63 %
% of genes near scaffold ends (potentially truncated) 5.00 %
% of genes from short scaffolds (< 2000 bps) 30.00 %
Associated GOLD sequencing projects 9
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (96.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont
(93.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1Ga0049116_100085842
2JGI26667J51740_100491051
3Ga0049105_10289797
4Ga0049105_11045262
5Ga0049105_12282572
6Ga0056135_100053676
7Ga0056135_100204783
8Ga0056135_100211624
9Ga0056135_100395752
10Ga0056135_100434072
11Ga0056135_100469163
12Ga0056135_100522182
13Ga0056135_100624335
14Ga0056135_100633783
15Ga0056135_100797111
16Ga0056135_101007574
17Ga0056135_101126233
18Ga0056135_101171692
19Ga0056135_101414473
20Ga0056135_101588362
21Ga0056135_101722572
22Ga0056135_102035813
23Ga0056135_103281821
24Ga0056135_103594882
25Ga0056135_103606731
26Ga0056135_104031261
27Ga0056135_104617132
28Ga0056135_105745761
29Ga0056133_100008331
30Ga0056133_100511615
31Ga0056133_100695133
32Ga0056133_100754903
33Ga0056133_100767513
34Ga0056133_101229522
35Ga0056133_101773673
36Ga0056133_102044093
37Ga0056133_102056961
38Ga0056133_102766461
39Ga0056133_103212943
40Ga0056133_105273522
41Ga0056133_105487531
42Ga0056133_105990922
43Ga0056134_100084433
44Ga0056134_100171203
45Ga0056134_100490873
46Ga0056134_100998743
47Ga0056134_101138014
48Ga0056134_101810852
49Ga0056134_101860982
50Ga0056134_102863861
51Ga0056134_104084351
52Ga0056134_104175541
53Ga0056109_10359511
54Ga0056109_10956851
55Ga0056108_10069444
56Ga0056108_10107323
57Ga0056108_10409032
58Ga0056108_10593143
59Ga0056108_10882953
60Ga0056108_10984542
61Ga0056108_11249852
62Ga0056108_11733082
63Ga0056108_11815611
64Ga0056108_12137711
65Ga0056108_12311791
66Ga0056108_12801262
67Ga0056108_13500641
68Ga0056108_13577201
69Ga0056108_13861582
70Ga0056108_14212552
71Ga0056108_14535131
72Ga0209790_10251092
73Ga0209785_10164592
74Ga0209785_10396281
75Ga0209562_11063691
76Ga0209255_11488771
77Ga0209789_100106012
78Ga0209789_100595711
79Ga0209789_100607132
80Ga0209789_100767413
81Ga0209789_101030002
82Ga0209789_101142621
83Ga0209789_101241611
84Ga0209789_101590511
85Ga0209259_11212051
86Ga0209259_11373721
87Ga0209259_11820132
88Ga0209259_12933861
89Ga0209259_13018562
90Ga0209259_13372911
91Ga0209259_14379531
92Ga0209259_14783801
93Ga0209459_100174432
94Ga0209459_100402811
95Ga0209459_100445642
96Ga0209459_100462851
97Ga0209459_101302662
98Ga0209459_101703512
99Ga0209459_101963891
100Ga0209459_103756261
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.73%    β-sheet: 0.00%    Coil/Unstructured: 46.27%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035MTLNGVMAVILRYFSEFGSFRGALRKVVEDIPKLSAKEMSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
4.0%96.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine Gutless Worms Symbiont
Marine Gutless Worms Symbiont
93.0%7.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0049116_1000858423300003786Marine Gutless Worms SymbiontMTLNGAVAFILRYFTEFGNFGVDNVKVVENRPIMSATKK*
JGI26667J51740_1004910513300003906Marine Gutless Worms SymbiontMTSNGVMALILHYFTKFGSFWGTLHKSGEDIPKLSATEM*
Ga0049105_102897973300004630Marine Gutless Worms SymbiontMTLNGAIALILRDFTEFGSFRGALRKVVEDIPKLSATEM*
Ga0049105_110452623300004630Marine Gutless Worms SymbiontMTLSGVMAVILCYFTELNSFWAHYVKVVEDTCILSATEMKPKDVVFN
Ga0049105_122825723300004630Marine Gutless Worms SymbiontMTLNGVVAFILRYFTEFGAFGANYVKVVEDRPSLSVTKM*
Ga0056135_1000536763300005652Marine Gutless Worms SymbiontMNDMNSVMAVSLRYFSEFGSFRGALRKVVEDVPKFSATEM*
Ga0056135_1002047833300005652Marine Gutless Worms SymbiontMTLNGVMAVILCYFSEIGTFGAYCVKVVDDIRKLSPTEM*
Ga0056135_1002116243300005652Marine Gutless Worms SymbiontMTLNGIMAVILCYFSKLGSFGRALRKLVEDLPKLSATEM*
Ga0056135_1003957523300005652Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKVGSFGRALRKVVEDIPKLSDGNVAHSF*
Ga0056135_1004340723300005652Marine Gutless Worms SymbiontMAFNGVMVVILCYFSKLGSFGRPLRKVVEDVLKFSATEM*
Ga0056135_1004691633300005652Marine Gutless Worms SymbiontMTLNGVMAVILCYYSKLCSFGRALRKVVEDIPVPKLSATEM*
Ga0056135_1005221823300005652Marine Gutless Worms SymbiontMTLNGVMAAILRYFNEFDSIWSARVKVVEDIRKLSMTEM*
Ga0056135_1006243353300005652Marine Gutless Worms SymbiontMTLNSVMVVILRYFIDIDSFRGALRKVVEDIPKLST
Ga0056135_1006337833300005652Marine Gutless Worms SymbiontMTLNGVMAVIFCYFSKLDRFGHALLKVVEDIPKLYAMEM*
Ga0056135_1007971113300005652Marine Gutless Worms SymbiontMTLTGVISFILRYFSEFGSFRGALSVKVFEDMPKLCATEI*
Ga0056135_1010075743300005652Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKLGSFGRALRKVVEDIPKLSVTEM*
Ga0056135_1011262333300005652Marine Gutless Worms SymbiontMTLNGVMAVILRYFTEFGNFRGALRKVVEDIPKLSATGM*
Ga0056135_1011716923300005652Marine Gutless Worms SymbiontMTLNGVMAVILRYFSEFRSLWSALHKMVEDILKLSATEM*
Ga0056135_1014144733300005652Marine Gutless Worms SymbiontMTLNGEVAVILRYFSEIGSIRGALRKVVEDIPKLSATEV*
Ga0056135_1015883623300005652Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKLGSFGHTLRKVVEDMPKLSATEM*
Ga0056135_1017225723300005652Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIAFGAHCVKVVEDIPKLSAIEM*
Ga0056135_1020358133300005652Marine Gutless Worms SymbiontMTLNGVMAVTLRYFSEFGSFWGALRKRVEDIPKLSAIGM*
Ga0056135_1032818213300005652Marine Gutless Worms SymbiontMTMNGVVAVILRYFSEIGSIRGALRKSVEDIAKHSTIEM*
Ga0056135_1035948823300005652Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGTFGAYCVKVVEDIPKLSATEM*
Ga0056135_1036067313300005652Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIRGTLRKVVEDIPKLSATEI*
Ga0056135_1040312613300005652Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKLGSFGHALRKVVEEIPKLSATEM*
Ga0056135_1046171323300005652Marine Gutless Worms SymbiontMTVNGVMAAILCYFSKLGSFGRALRKVVEDIPKLSAT
Ga0056135_1057457613300005652Marine Gutless Worms SymbiontMTLNGVMALIPRYFTEFGSFRGALRKSGVEDILKLSATGM*
Ga0056133_1000083313300005653Marine Gutless Worms SymbiontMTLNGVMAVIVCYFSKLGSLGRALRNVVKDIPKLSATEM*
Ga0056133_1005116153300005653Marine Gutless Worms SymbiontMTVNGVMAAILCYFSKLGSFGRALRKVVEDIPKLSATEM*
Ga0056133_1006951333300005653Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIRWALRKVVADIPKISATEM*
Ga0056133_1007549033300005653Marine Gutless Worms SymbiontMALNGVMAVILCYFIKLGSFGRALRNVVEDIPKLSATAMQRKVSRF*
Ga0056133_1007675133300005653Marine Gutless Worms SymbiontMTLNGVMAVFMRYFSDFGSFSAHCVKVVEDMPKLSATEI*
Ga0056133_1012295223300005653Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKLGSFGRALPKVVEDIPKLSATEM*
Ga0056133_1017736733300005653Marine Gutless Worms SymbiontMTLNGTMAVILRYFSEFDSFRGALRKVVEDIPKLST
Ga0056133_1020440933300005653Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIWGALRINVVEDIPKLSATEM*
Ga0056133_1020569613300005653Marine Gutless Worms SymbiontMTLNSVVAVILRYFSEIGSIRGALRKVVEDIPKLSA
Ga0056133_1027664613300005653Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKLGSFGRTLRKVLEDIPKLSATEI*
Ga0056133_1032129433300005653Marine Gutless Worms SymbiontMTLNGVMAVIFCYFSKLDRFGRALRKVVEDIPKLYAMEM*
Ga0056133_1052735223300005653Marine Gutless Worms SymbiontMTLNGMIGILAVILRYFSKFDSSGRALRKVVEVEDIPKLSATEI*
Ga0056133_1054875313300005653Marine Gutless Worms SymbiontMALNGVAAVIWRYFSEIGSIWCALRKVVEDIPKLSAAGT*
Ga0056133_1059909223300005653Marine Gutless Worms SymbiontMTLNGVIPVILCYFSKLGSFVRALRKVVEDIPNLSATEM*
Ga0056134_1000844333300005970Marine Gutless Worms SymbiontVTLNGVMAIILQYFSEYGSFWGALRKVVEDIPKLSATEMYLKAFSF*
Ga0056134_1001712033300005970Marine Gutless Worms SymbiontMTLNGVVAVILCYFSEIGSFRPHCIKVVEDMPKLSATEM*
Ga0056134_1004908733300005970Marine Gutless Worms SymbiontMTLNGAVAVILRYFSDIGRIQGALRKVVEDIPKLSATEMYFKASTF*
Ga0056134_1009987433300005970Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSVVFGAHCVKVVEDIPKLSATEM*
Ga0056134_1011380143300005970Marine Gutless Worms SymbiontMTLNGVMAVIVCYFSKLGSLTRALRNVVKDIPKLSATEM*
Ga0056134_1018108523300005970Marine Gutless Worms SymbiontMTLNGVMAVILRYFSKLGSFRAHYIKVVKDIPKFSAIEM*
Ga0056134_1018609823300005970Marine Gutless Worms SymbiontMTLNGTMAVVLRYFSEFESFRGALRKVVEDIPKLSTTEM
Ga0056134_1028638613300005970Marine Gutless Worms SymbiontMTLNGVMVVILRYLSKIRSIRGALRKVVEDIPKLSATEINVVQSF*
Ga0056134_1040843513300005970Marine Gutless Worms SymbiontVMAFILRYFTEFGNFRGALRKVVEDIPKLSATGM*
Ga0056134_1041755413300005970Marine Gutless Worms SymbiontMTLNGVMVVILLCFSEFGSFRGALRKVVEDIPKLSAATEM*
Ga0056109_103595113300007818Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKLGSFGRALRKVVEDIPKLSATEM*
Ga0056109_109568513300007818Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGGIRAQCVKVVEDIPKLSATEM*
Ga0056108_100694443300008215Marine Gutless Worms SymbiontMTLNGVVAVILRYFCEIGSLRGALRKVVEDIPKLSATGLYLNASSF*
Ga0056108_101073233300008215Marine Gutless Worms SymbiontMIFNGVVAVILRYFSEIGSIRGALVLKMVEDIPKLSATEM*
Ga0056108_104090323300008215Marine Gutless Worms SymbiontLNGVMAVILCYFSKLGSFGRALRKVVEDIPKLSATEM*
Ga0056108_105931433300008215Marine Gutless Worms SymbiontMTLNGVMAVILRYFSEFDSIRGALSIKVVEDIPKLSATEMYSF*
Ga0056108_108829533300008215Marine Gutless Worms SymbiontMTSNGVMAVILRYFTEFGNFRGALRKSVEDIPKLSATGM*
Ga0056108_109845423300008215Marine Gutless Worms SymbiontMTLNGVMAVILRYFSEIGSLRGVLRKVVEDIPKLSATEM*
Ga0056108_112498523300008215Marine Gutless Worms SymbiontMALNGVAAVIWRYFSEIGSIWCALRKVVEDIPKLSAIKNVGQSF*
Ga0056108_117330823300008215Marine Gutless Worms SymbiontMTLNGVMAVILRYFSEFRSLWSALRKMVEDILKLSATEM*
Ga0056108_118156113300008215Marine Gutless Worms SymbiontMTFNGVMAVIFSYFSKLDRFGRALRKVVEDIPKLYTMEM*
Ga0056108_121377113300008215Marine Gutless Worms SymbiontMTLNGTMAVILRYFSEFNSFRGALRKVVEDIPKLSTTEM*
Ga0056108_123117913300008215Marine Gutless Worms SymbiontMTLTGVISFILRYFSEFGNFRGALSVKVFEDMPKLCATEI*
Ga0056108_128012623300008215Marine Gutless Worms SymbiontMTLNGILLAVILRYFSKLDSSGRALRKVVEVEDIPKLSTTEI*
Ga0056108_135006413300008215Marine Gutless Worms SymbiontMSLNGVVAVILRYFSEIGSIRGALRKVVEDIPNVSATEM*
Ga0056108_135772013300008215Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIRGALRKVVEYIPKMSATEMYSKDPSF*
Ga0056108_138615823300008215Marine Gutless Worms SymbiontMTLNGVMALILRYFTEFASFRGALRKVVEDIPKLSATEM*
Ga0056108_142125523300008215Marine Gutless Worms SymbiontMTLNGVMALILRYFTEFGSFPGALRKVVEDIPKLSAAEM*
Ga0056108_145351313300008215Marine Gutless Worms SymbiontMTLNGVMVVILRYFSEFGNFRGALRHCVKVVEDIPKLSATEM*
Ga0209790_102510923300027001Marine Gutless Worms SymbiontMTLNGVMAVTLRYFSEFGSFWGALRKRVEDIPKLSAIGM
Ga0209785_101645923300027044Marine Gutless Worms SymbiontMTLNGVMAVILRYFSEFRSLWSALRKMVEDILKLSATEM
Ga0209785_103962813300027044Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKLGSFGRALRKVVEDIPKLSATEM
Ga0209562_110636913300027519Marine Gutless Worms SymbiontMTLNGAVAFILRYFTEFGNFGVDNVKVVENRPIMSATKK
Ga0209255_114887713300027550Marine Gutless Worms SymbiontMTLNSVMTVTMRYFSEFGSFPGALCKVDEDTPTLSVAEM
Ga0209789_1001060123300027624Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKLGSFGHTLRKVVEDMPKLSATEM
Ga0209789_1005957113300027624Marine Gutless Worms SymbiontMTLNGTMAVILRYFTEFASFRGALRKMVENIPKRSATAM
Ga0209789_1006071323300027624Marine Gutless Worms SymbiontMTLNGVMAFILRYFTEFGNFRGALRKVVEDIPKLSATGM
Ga0209789_1007674133300027624Marine Gutless Worms SymbiontMTLNGVVAVILRYFNEIGTFGAHYVKVVEDIPKLSTTEM
Ga0209789_1010300023300027624Marine Gutless Worms SymbiontMALNGVAAVIWRYFSEIGSIWCALRKVVEDIPKLSAAGT
Ga0209789_1011426213300027624Marine Gutless Worms SymbiontTLNGVMAVILRYFSEFRSLWSALHKMVEDILKLSATEM
Ga0209789_1012416113300027624Marine Gutless Worms SymbiontMTLNGVMAVILCYFSKVGSFGRALRKVVEDIPKLSDGNVAHSF
Ga0209789_1015905113300027624Marine Gutless Worms SymbiontMTLNGVMVVILLCFSEFGSFRGALRKVVEDIPKLSAATEM
Ga0209259_112120513300027658Marine Gutless Worms SymbiontMALNGVMAVILCYFIKLGSFGRALRNVVEDIPKLSATAMQRKVSRF
Ga0209259_113737213300027658Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIAFGAHCVKVVEDIPKLSAIEM
Ga0209259_118201323300027658Marine Gutless Worms SymbiontMTLNGVMALIPRYFTEFGSFRGALRKSGVEDILKLSATGM
Ga0209259_129338613300027658Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIWGALRINVVEDIPKLSATEM
Ga0209259_130185623300027658Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIRGTLRKVVEDIPKLSATEI
Ga0209259_133729113300027658Marine Gutless Worms SymbiontMTLNGMIGILAVILRYFSKFDSSGRALRKVVEVEDIPKLSATEI
Ga0209259_143795313300027658Marine Gutless Worms SymbiontPSITLNGVMTVILCYFSKLGSFGRALRKVVEDIPKLSATKM
Ga0209259_147838013300027658Marine Gutless Worms SymbiontMTLNGTMAVILRYFNEFDSFRGALRKVVEDIPKLSATEM
Ga0209459_1001744323300027661Marine Gutless Worms SymbiontMTLNGVMAVILCYFSEIGTFGAYCVKVVDDIRKLSPTEM
Ga0209459_1004028113300027661Marine Gutless Worms SymbiontMTSNGVMAVILCYFSEYGSLRAHCVKVVEGISLRKLSATGL
Ga0209459_1004456423300027661Marine Gutless Worms SymbiontMTLNGVMAVILCYYSKLCSFGRALRKVVEDIPVPKLSATEM
Ga0209459_1004628513300027661Marine Gutless Worms SymbiontMTLNGVVAVILRYFSEIGSIAFGAHCVKVVEDIRK
Ga0209459_1013026623300027661Marine Gutless Worms SymbiontMTVNGVMAAILCYFSKLGSFGRALRKVVEDIPKLSATEM
Ga0209459_1017035123300027661Marine Gutless Worms SymbiontMTLNGVMAVILRYFTEFGNFRGALRKVVEDIPKLSATGM
Ga0209459_1019638913300027661Marine Gutless Worms SymbiontMTLNGVMAVILRYFSEFGSFRGALRKVVEDIPKLSAKEM
Ga0209459_1037562613300027661Marine Gutless Worms SymbiontMTLIGVMAVILRYLSDFGSFQRELRKSGFVEDIHKLSATEM


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.