Metagenome / Metatranscriptome Family F104305

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104305
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	94 residues
Representative Sequence	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLV
Number of Associated Samples	81
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	68.00 %
% of genes from short scaffolds (< 2000 bps)	57.00 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (76.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (65.000 % of family members)
Environment Ontology (ENVO)	Unclassified (94.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (91.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132. 1TB03JUN2009E_0531771 2TB18AUG2009E_0029575 3TBL_comb48_EPIDRAFT_10074471 4TBL_comb48_EPIDRAFT_10123411 5TBL_comb48_EPIDRAFT_10128061 6TBL_comb48_EPIDRAFT_10357161 7JGI24218J26658_10042646 8JGI24219J26650_10204952 9JGI26470J50227_10156673 10Ga0007850_10196602 11Ga0007835_10046722 12Ga0007835_10057502 13Ga0007835_10196632 14Ga0007865_10035301 15Ga0007842_10038922 16Ga0007861_10195401 17Ga0007879_10265391 18Ga0007863_10056733 19Ga0007829_100807042 20Ga0065171_10392751 21Ga0065171_10518641 22Ga0007795_102312671 23Ga0007800_101708021 24Ga0007854_104518622 25Ga0007809_100072087 26Ga0007809_100927162 27Ga0007813_10291541 28Ga0007882_102796182 29Ga0007819_10999191 30Ga0007833_10015998 31Ga0007862_10846361 32Ga0007862_11119271 33Ga0007857_10327451 34Ga0007858_10132501 35Ga0007858_10602772 36Ga0007815_10656322 37Ga0007859_10517472 38Ga0007824_10427091 39Ga0007837_10268722 40Ga0007852_10140533 41Ga0007828_10340512 42Ga0007828_11113721 43Ga0007834_10525852 44Ga0114951_106106921 45Ga0116188_12538131 46Ga0116189_13010702 47Ga0157562_11139371 48Ga0157567_1076503 49Ga0164296_11123691 50Ga0164296_12090812 51Ga0164296_13306141 52Ga0164296_13363002 53Ga0180040_10391852 54Ga0214239_1124341 55Ga0214238_10061233 56Ga0214254_10260841 57Ga0214236_10247752 58Ga0214180_10239711 59Ga0214206_10283972 60Ga0214206_10377762 61Ga0214165_10572902 62Ga0208615_1021941 63Ga0208252_1098442 64Ga0208621_10361462 65Ga0208382_10304682 66Ga0207960_10446951 67Ga0208738_10514501 68Ga0207956_10175452 69Ga0207956_10268431 70Ga0207959_10142263 71Ga0208257_10369021 72Ga0208740_10137882 73Ga0208109_10035401 74Ga0208874_10076623 75Ga0208874_10165652 76Ga0208251_10089331 77Ga0208387_10685132 78Ga0207955_10132461 79Ga0208745_10531901 80Ga0208865_10150463 81Ga0208877_10826891 82Ga0208616_10144662 83Ga0208622_10695812 84Ga0208742_10179651 85Ga0208742_10200521 86Ga0208497_10019489 87Ga0208495_10712911 88Ga0208379_10008361 89Ga0208379_10237991 90Ga0208388_10381591 91Ga0208386_10106643 92Ga0316219_12807582 93Ga0316223_12076441 94Ga0316222_13221511 95Ga0316226_13236771 96Ga0316232_11360732 97Ga0316225_10211695 98Ga0316227_11106822 99Ga0316231_11059831 100Ga0316231_11969882
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132. 1TB03JUN2009E_0531771 2TB18AUG2009E_0029575 3TBL_comb48_EPIDRAFT_10357161 4JGI26470J50227_10156673 5Ga0007879_10265391 6Ga0065171_10518641 7Ga0007862_10846361 8Ga0007828_10340512 9Ga0116188_12538131 10Ga0164296_13363002 11Ga0316231_11969882
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132. 1TB03JUN2009E_0531771 2TB18AUG2009E_0029575 3TBL_comb48_EPIDRAFT_10357161 4JGI26470J50227_10156673 5Ga0007879_10265391 6Ga0065171_10518641 7Ga0007862_10846361 8Ga0007828_10340512 9Ga0116188_12538131 10Ga0164296_13363002 11Ga0316231_11969882
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.53% β-sheet: 23.16% Coil/Unstructured: 66.32%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF00166	Cpn10	6.00
PF02945	Endonuclease_7	4.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	6.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	24.00 %
Unclassified	root	N/A	76.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	21.00 %
Unclassified	root	N/A	76.00 %
Viruses	superkingdom	All Organisms → Viruses	3.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.00 %
Unclassified	root	N/A	76.00 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.00 %
Unclassified	root	N/A	76.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.00 %
Unclassified	root	N/A	76.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.00 %
Unclassified	root	N/A	76.00 %

Name	Rank	Taxonomy	Distribution
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.00 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	6.00 %
Unclassified	root	N/A	76.00 %

Name	Rank	Taxonomy	Distribution
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	8.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.00 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	6.00 %
Unclassified	root	N/A	76.00 %

Name	Rank	Taxonomy	Distribution
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	8.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.00 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	6.00 %
Unclassified	root	N/A	76.00 %

Name	Rank	Taxonomy	Distribution
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	8.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.00 %
Rhizobium lusitanum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium lusitanum	6.00 %
Unclassified	root	N/A	76.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000203\|TB18AUG2009E_c002957	Not Available	2691	Open in IMG/M
3300000439\|TBL_comb48_EPIDRAFT_1007447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6370	Open in IMG/M
3300000439\|TBL_comb48_EPIDRAFT_1012341	Not Available	4477	Open in IMG/M
3300000439\|TBL_comb48_EPIDRAFT_1012806	Not Available	4370	Open in IMG/M
3300000439\|TBL_comb48_EPIDRAFT_1035716	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300002092\|JGI24218J26658_1004264	All Organisms → cellular organisms → Bacteria	3103	Open in IMG/M
3300002098\|JGI24219J26650_1020495	Not Available	897	Open in IMG/M
3300003789\|Ga0007835_1004672	Not Available	1416	Open in IMG/M
3300003789\|Ga0007835_1019663	Not Available	554	Open in IMG/M
3300003796\|Ga0007865_1003530	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	2.00%
Environmental	Environmental	98.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.00%
Wastewater	Engineered → Wastewater	2.00%

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	2.00%
Freshwater	Environmental → Aquatic → Freshwater	98.00%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	8.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic	90.00%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	2.00%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	9.00%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	14.00%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	67.00%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	8.00%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	2.00%

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	2.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	65.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	14.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	9.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	2.00%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000176	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300000203	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300002092	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome	Environmental	Open in IMG/M
3300002098	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08	Environmental	Open in IMG/M
3300003789	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08	Environmental	Open in IMG/M
3300003796	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09	Environmental	Open in IMG/M
3300003798	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009E_0531771	3300000176	Freshwater	MANTAFSGPLMVFGQNPSQPSDYNPDIGGMSMFNGAAGIMDPRGYYTYLPGESQAAYDYGWLGFDNITTINAVPYTKAAGAIVASANAT
TB18AUG2009E_0029575	3300000203	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSA
TBL_comb48_EPIDRAFT_10074471	3300000439	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGESQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLTLV
TBL_comb48_EPIDRAFT_10123411	3300000439	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRAPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVSTNSATTGVYYSSV
TBL_comb48_EPIDRAFT_10128061	3300000439	Freshwater	MADTAFSGPIIVFGQNPTQPLDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATL
TBL_comb48_EPIDRAFT_10357161	3300000439	Freshwater	MANAAFSGPLVVFGQNPTQPGDYNPDIGGSSLFYAGTGILDPRQVYTYIPGESQSAADFGWLGVDNITTLSAVPYTAAAAA
JGI24218J26658_10042646	3300002092	Lentic	MSVTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRAAFTYLPGEAQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSL*
JGI24219J26650_10204952	3300002098	Lentic	MSISAFSGPVVVFGQNPNQPSDYNPDLGSSLFYAGGGILDPRSPFTYFPGEAQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSATTGVYYSS
JGI26470J50227_10156673	3300003375	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGTSLFWGGAAILDPRTAYTYFPGEGQSAQDFGWLGFDNITTQSIVPYSKATARLLPLPMLQVLH*
Ga0007850_10196602	3300003783	Freshwater	MANAAFSGPLVVFGQNPTQPGDYNPDIGGSSLFYAGTGILDPRQVYTYIPGESQSAXDFGWLGVDNITTLSAVPYTAAAAAIVASANPTSATL
Ga0007835_10046722	3300003789	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYIPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVN*
Ga0007835_10057502	3300003789	Freshwater	MANAAFSGPLVVFGQNPTQPGDYNPDIGGSSLFYAGTGILDPRQVYTYIPGESQSASDFGWLGVDNITTLSAVPYTAAAAAIVASANPTSATL
Ga0007835_10196632	3300003789	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGESQSAQDFGWYGFSDIVSFTGVPYT
Ga0007865_10035301	3300003796	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGEAQSAQDFGWYGFSDIVSFTGVPYT
Ga0007842_10038922	3300003798	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSATT
Ga0007861_10195401	3300003812	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSATTGV
Ga0007879_10265391	3300003813	Freshwater	MANAAFSGPLVVXGQNPTQPGDYNPDIGGSSLFYAGTGILDPRQVYTYIPGESQSASDFGWLGVDNITTLSAVPYTAAAAAIVASANPTSATLTLVSSNSSTTGVYY
Ga0007863_10056733	3300003820	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNA
Ga0007829_100807042	3300004095	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGEAQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVSTNSAT
Ga0065171_10392751	3300004692	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRFPFTYIPGEAQSAQDFGWYGFSDIVSFTGVPYTN
Ga0065171_10518641	3300004692	Freshwater	MANTAFSGPMIVFGQNPSSPTDYNPDIGGSSYFYAGAGFLDPRAYYTFLPGEAQAAIDYGWLGFDNITTLSAVPYSAAAAAIVASANPTSATLS
Ga0007795_102312671	3300004773	Freshwater	MANTSFSGPIVVFGQNPASPSDYNPDIGGSSLFYAGTGILDPRAPFTFLPGEAQSAVDYGWLGVDNITTLSAVPYSAAAAAIVASANPTSATLSLVTSSSSTTGVYYN
Ga0007800_101708021	3300004776	Freshwater	MAHASFSGPLVVFGQNPTQPSDYNPDIGGSSLFASGTGILDPRTPYTYYPGEAQPAPDFGWLGVDNITTLSAVPYSASAAAIVASANPTSATLTLVSSNSST
Ga0007854_104518622	3300004806	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLTLVSTNSATTGVY
Ga0007809_100072087	3300004807	Freshwater	MSVTAFSGPMIVFGQNPIQPSDYNPDLGSSLFYAGGGILDPRTPFTYIPGESQAAQDFGWYGFSDIVSFTGVPYTNA
Ga0007809_100927162	3300004807	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASA
Ga0007813_10291541	3300006103	Freshwater	MANTAFSGPVIVFGQNPTQPADYNPDIGGSSLFYAGTAILDPRAPFTFLPGESQAAVDYGWLGVDNITTLSAVPYTAASAAIVASA
Ga0007882_102796182	3300006104	Freshwater	MANTAFSGPLIVFGQNPTQPADYNPDIGGSSLFYAGTAILDPRAPFTFLPGESQAAIDYGWLGVDNITTLSAVPYTAA
Ga0007819_10999191	3300006105	Freshwater	MANTAFSGPLMVFGQNPSQPSDYNPDVGGMSMFIGGAGIMDPRTVYTYFPGESQAAYDYGWLGFDNITTINAVPYTKATGAIVASANATSATLTLVSAGS
Ga0007833_10015998	3300006106	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVS
Ga0007862_10846361	3300006108	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYLPGESQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVSTNSATTGVYYSSVFTRSDTG
Ga0007862_11119271	3300006108	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVSTNS
Ga0007857_10327451	3300006112	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAA
Ga0007858_10132501	3300006113	Freshwater	MANAAFSGPLVVFGQNPTQPGDYNPDIGGSSLFYAGTGILDPRQVYTYIPGESQSASDFGWLGVDNITTLSAVPYTAAAAAIVASANPTSATLTLVSSNSS
Ga0007858_10602772	3300006113	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYIPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTL
Ga0007815_10656322	3300006114	Freshwater	MANAAFSGPLVVFGQNPTQPGDYNPDIGGSSLFYAGTGILDPRQVYTYIPGESQSAADFGWLGVDNITTLSAVPYTAAAAAIV
Ga0007859_10517472	3300006118	Freshwater	MANTAFSGPIMVFGQNPSNPADYNPDIGGMSMFNGAAGIMDPRVYYTYLPGEAQSAYDYGWLGFDNITTINAVPYTKAAGAIVASANATSATLTLVSAGSATT
Ga0007824_10427091	3300006121	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGEAQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATL
Ga0007837_10268722	3300006122	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVSTNSATT
Ga0007852_10140533	3300006123	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGEAQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLT
Ga0007828_10340512	3300006128	Freshwater	MAISAFSGPAIVFGQNPTQPADYNPDLGTSLFWGGAAILDPRAAYTYLPGESQSAPDFGWLGFDNITTQSIVPYTKATGAIVASANATSATLTLVSANS
Ga0007828_11113721	3300006128	Freshwater	MAHASFSGPLIVFGQNPTQPSDYNPDIGGSSLFNAGTGILDPRIPYTYFPGEAQPAPDFGWLGVDNITTLSAVPYTASATAIVASAA
Ga0007834_10525852	3300006129	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSATT
Ga0114951_106106921	3300009502	Freshwater	MANTAFSGPLMVFGQNPSQPSDYNPDVGGMSMFIGGAGIMDPRTVYTYFPGESQAAYDYGWLGFDNITTINAVPYTKATGA
Ga0116188_12538131	3300009658	Anaerobic Digestor Sludge	MTITAFSGPIIGFGQNQVGSEYNPDLGPSMFWGGAGLMDPRLAYAYQPGRARSAGVFGWLGFDNITTISAVPYTKAAGAIVASANPTGATLTLVSANSATTGVYITPSITRADTGAIDTNGGAGLVAI
Ga0116189_13010702	3300009714	Anaerobic Digestor Sludge	MTITAFSGPIIGFGQNQVGSEYNPDLGPSLFWGGAGLMDPRLAYAYQPGRARSAGVFGWLGFDNITTISAVPYTKAAGAIVASANPTGATLTLVSANSATTGVY
Ga0157562_11139371	3300012701	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGEAQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLTL
Ga0157567_1076503	3300012743	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSATTG
Ga0164296_11123691	3300013093	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVA
Ga0164296_12090812	3300013093	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRAPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPT
Ga0164296_13306141	3300013093	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASAN
Ga0164296_13363002	3300013093	Freshwater	MAITGYSGPLMVFGQSPFTPNEYNPDIGGSSMFYAGAGIMDPRTPFTYLPGEAQAAADFGWLGFDNITTINAVPYTKAAGAIVTSANATSATLTLNSSN
Ga0180040_10391852	3300016692	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRAPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAA
Ga0214239_1124341	3300020688	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVSTNSATTGVYYSSVFTRSDT
Ga0214238_10061233	3300020707	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGESQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVSTNSATTGVYYSSVFT
Ga0214254_10260841	3300020715	Freshwater	MANAAFSGPLVVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLS
Ga0214236_10247752	3300020721	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSATTGVYYSSNF
Ga0214180_10239711	3300021130	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSATTGVYYSSNFTRSD
Ga0214206_10283972	3300021131	Freshwater	MSDTAFSGPIIVFGQNPNQPSDYNPDLGSSLFYAGGGILDPRLPFTYIPGESQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPT
Ga0214206_10377762	3300021131	Freshwater	MAISAFSGPAIVFGQNPTQPADYNPDLGTSLFWGGAAILDPRAAYTYLPGESQSAPDFGWLGFDNITTQSIVPYTKATGAIVASANATSATLTLVSANSATTGVYI
Ga0214165_10572902	3300021137	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGTSLFWGGAAILDPRAAYTYFPGEGQSAQDFGWLGFDNITTQSIVPYSKATGAI
Ga0208615_1021941	3300025330	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVSTNSATTGVYYSSVFTRSDTGATD
Ga0208252_1098442	3300025337	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVSTNSATTGVYY
Ga0208621_10361462	3300025365	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVSTNSATTG
Ga0208382_10304682	3300025369	Freshwater	MANAAFSGPLVVFGQNPTQPGDYNPDIGGSSLFYAGTGILDPRQVYTYIPGESQSASDFGWLGVDNITTLSAVPYTAAAAAIVASANPT
Ga0207960_10446951	3300025378	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRFPFTYIPGEAQSAQDFGWYGFSDIVSFTGVPYTN
Ga0208738_10514501	3300025379	Freshwater	MANTAFSGPVIVFGQNPTQPSDYNPDIGGSSLFYAGTAILDPRAPFTFLPGESQAAIDYGWLGVDNITTLSAVPYTAASAAIVASANPTSATLALVTTSSST
Ga0207956_10175452	3300025385	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRFPFTYLPGEAQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSATTGV
Ga0207956_10268431	3300025385	Freshwater	MADTVFSGPLIVFGQNPNQPADYNPDLGSSLFYAGGGILDPRGPFTYYPGESQSSPDFGWYGFSDIVSFSGVPYTNSTAAIVASANPTSATLALVTTNS
Ga0207959_10142263	3300025387	Freshwater	MADTVFSGPLIVFGQNPNQPADYNPDLGSSLFYAGGGILDPRGPFTYYPGESQSSPDFGWYGFSDIVSFSGVPYTNSTAAIVASANPT
Ga0208257_10369021	3300025389	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATS
Ga0208740_10137882	3300025391	Freshwater	MANTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATS
Ga0208109_10035401	3300025395	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASA
Ga0208874_10076623	3300025396	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAA
Ga0208874_10165652	3300025396	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYIPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAA
Ga0208251_10089331	3300025398	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVSTNSATTGVYYSSVFTRSD
Ga0208387_10685132	3300025400	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYIPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVTTNSA
Ga0207955_10132461	3300025401	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYIPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATL
Ga0208745_10531901	3300025403	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYIPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLV
Ga0208865_10150463	3300025411	Freshwater	MAITGYSGPLMVFGQSPFTPNEYNPDIGGSSMFYAGAGIMDPRTPFTYLPGEAQSAADFGWLGFDNITTINAVPYTKAAGAIVTSANATSATLTLNSSNSAT
Ga0208877_10826891	3300025416	Freshwater	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLV
Ga0208616_10144662	3300025417	Freshwater	MADTAFSGPLIVFGQNPSQPSDYNPDLGSSLFYAGGGILDPRLPFTYLPGESQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLSLVT
Ga0208622_10695812	3300025430	Freshwater	MANAAFSGPLVVFGQNPTQPGDYNPDIGGSSLFYAGTGILDPRQVYTYIPGESQSAADFGWLGVDNITTLSAVPYTAAAAAIVASANPTSATLSLVTS
Ga0208742_10179651	3300025437	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGEAQSAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATSATLTLVSTNSATTGVYY
Ga0208742_10200521	3300025437	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAA
Ga0208497_10019489	3300025466	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANATS
Ga0208495_10712911	3300025476	Freshwater	MAHASFSGPLVVFGQNPTQPSDYNPDIGGSSLFASGTGILDPRTPYTYYPGEAQPAPDFGWLGVDNITTLSAVPYSASAAAIVASANPTSATLTLVLSNLQAETSEGSV
Ga0208379_10008361	3300025598	Freshwater	MADTVFSGPLIVFGQNPNQPADYNPDLGSSLFYAGGGILDPRGPFTYYPGESQSSPDFGWYGFSDIVSFSGVPYTNSTAAIVASANPTSATLALVT
Ga0208379_10237991	3300025598	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVA
Ga0208388_10381591	3300025778	Freshwater	MANTAFSGPMIVFGQNPSSPTDYNPDIGGSSYFYAGAGFLDPRAYYTFLPGEAQAAIDYGWLGFDNITTLSAVPYSAAAAAIVA
Ga0208386_10106643	3300025781	Freshwater	MADTAFSGPIIVFGQSPYTGSEYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASAN
Ga0316219_12807582	3300031759	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRAPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVAS
Ga0316223_12076441	3300032560	Freshwater	MANTSFSGPLIVFGQNPTQPADYNPDIGGSSLFYAGTAILDPRTPFTFLPGESQAAVDFGWLGVDNITTLSAVPYTAASAAIVASANPTSATL
Ga0316222_13221511	3300032561	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRAPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANP
Ga0316226_13236771	3300032562	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRAPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIVASANPTSATLTLVSTNSA
Ga0316232_11360732	3300032605	Freshwater	MAITAFSGPMIVFGQSPYTPNEYNPDIGGSSLFYAGAGTMDPRTLYTYLPGEAQSQLDYGFLGFDNITTINAVPYTKATGAIVTSANATSATLSL
Ga0316225_10211695	3300032675	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRAPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAA
Ga0316227_11106822	3300032677	Freshwater	MADTAFSGPLIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRTPFTYLPGESQAAQDFGWYGFSDIVSFTGVPYTNAAAAIV
Ga0316231_11059831	3300032722	Freshwater	MAITGYSGPLMVFGQSPFTPNEYNPDIGGSSMFYAGAGIMDPRTPFTYLPGEAQAAADFGWLGFDNITTINAVPYTKAAGAIVTSANATSATLTLNSS
Ga0316231_11969882	3300032722	Freshwater	MAITAFSGPMIVFGQSPYTPNEYNPDIGGSSLFYAGAGTMDPRTLYTYLPGEAQSQLDYGFLGFDNITTINAVPYTKATGAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104305

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences