NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104270

Metagenome / Metatranscriptome Family F104270

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104270
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 42 residues
Representative Sequence HKDLDRFGPPERNTLRPVWWFVFPLVLFDVLEGSLLALI
Number of Associated Samples 65
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 26.00 %
% of genes near scaffold ends (potentially truncated) 98.00 %
% of genes from short scaffolds (< 2000 bps) 96.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (77.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(82.000 % of family members)
Environment Ontology (ENVO) Unclassified
(97.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(78.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 41.79%    β-sheet: 0.00%    Coil/Unstructured: 58.21%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00078RVT_1 1.00
PF04195Transposase_28 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A77.00 %
All OrganismsrootAll Organisms23.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005617|Ga0068859_101123728Not Available865Open in IMG/M
3300009553|Ga0105249_11830940Not Available680Open in IMG/M
3300009975|Ga0105129_105852Not Available732Open in IMG/M
3300009976|Ga0105128_114892Not Available574Open in IMG/M
3300009980|Ga0105135_105429Not Available845Open in IMG/M
3300009980|Ga0105135_111219All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum694Open in IMG/M
3300009980|Ga0105135_125082Not Available543Open in IMG/M
3300009981|Ga0105133_118139All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei603Open in IMG/M
3300009989|Ga0105131_109468Not Available818Open in IMG/M
3300009989|Ga0105131_142280Not Available511Open in IMG/M
3300009990|Ga0105132_121661Not Available639Open in IMG/M
3300009994|Ga0105126_1012478All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum834Open in IMG/M
3300009995|Ga0105139_1074984Not Available632Open in IMG/M
3300009995|Ga0105139_1115560Not Available520Open in IMG/M
3300010396|Ga0134126_12967389Not Available513Open in IMG/M
3300015290|Ga0182105_1059647Not Available621Open in IMG/M
3300015297|Ga0182104_1008530All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1162Open in IMG/M
3300015297|Ga0182104_1112997Not Available515Open in IMG/M
3300015301|Ga0182184_1061328Not Available598Open in IMG/M
3300015301|Ga0182184_1086215Not Available532Open in IMG/M
3300015306|Ga0182180_1021852Not Available855Open in IMG/M
3300015306|Ga0182180_1022392Not Available847Open in IMG/M
3300015310|Ga0182162_1059290Not Available671Open in IMG/M
3300015311|Ga0182182_1057702Not Available658Open in IMG/M
3300015311|Ga0182182_1075057Not Available601Open in IMG/M
3300015311|Ga0182182_1089081Not Available565Open in IMG/M
3300015316|Ga0182121_1005395Not Available1511Open in IMG/M
3300015317|Ga0182136_1062107Not Available686Open in IMG/M
3300015317|Ga0182136_1126630Not Available525Open in IMG/M
3300015317|Ga0182136_1134504Not Available512Open in IMG/M
3300015320|Ga0182165_1075140Not Available655Open in IMG/M
3300015327|Ga0182114_1134269Not Available545Open in IMG/M
3300015328|Ga0182153_1061532Not Available709Open in IMG/M
3300015328|Ga0182153_1066978Not Available688Open in IMG/M
3300015329|Ga0182135_1119110All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum559Open in IMG/M
3300015330|Ga0182152_1073509Not Available673Open in IMG/M
3300015332|Ga0182117_1040140Not Available890Open in IMG/M
3300015333|Ga0182147_1064082Not Available741Open in IMG/M
3300015333|Ga0182147_1098746Not Available629Open in IMG/M
3300015334|Ga0182132_1116051All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae590Open in IMG/M
3300015335|Ga0182116_1176625Not Available504Open in IMG/M
3300015336|Ga0182150_1066778Not Available718Open in IMG/M
3300015337|Ga0182151_1017291All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1116Open in IMG/M
3300015337|Ga0182151_1076239Not Available684Open in IMG/M
3300015337|Ga0182151_1076988Not Available682Open in IMG/M
3300015338|Ga0182137_1151624Not Available541Open in IMG/M
3300015339|Ga0182149_1076755Not Available702Open in IMG/M
3300015339|Ga0182149_1153765Not Available530Open in IMG/M
3300015340|Ga0182133_1091121Not Available690Open in IMG/M
3300015340|Ga0182133_1168165Not Available533Open in IMG/M
3300015348|Ga0182115_1114275Not Available854Open in IMG/M
3300015348|Ga0182115_1153589All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum737Open in IMG/M
3300015348|Ga0182115_1289782Not Available517Open in IMG/M
3300015349|Ga0182185_1135547Not Available727Open in IMG/M
3300015349|Ga0182185_1152108Not Available689Open in IMG/M
3300015349|Ga0182185_1172875Not Available648Open in IMG/M
3300015349|Ga0182185_1270602Not Available518Open in IMG/M
3300015350|Ga0182163_1035079Not Available1344Open in IMG/M
3300015352|Ga0182169_1127860All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Setariidae → Setaria824Open in IMG/M
3300015352|Ga0182169_1187179Not Available677Open in IMG/M
3300015353|Ga0182179_1221917Not Available605Open in IMG/M
3300015353|Ga0182179_1314586Not Available510Open in IMG/M
3300015354|Ga0182167_1128473Not Available934Open in IMG/M
3300015354|Ga0182167_1245816Not Available646Open in IMG/M
3300015354|Ga0182167_1252015Not Available636Open in IMG/M
3300015354|Ga0182167_1325106Not Available541Open in IMG/M
3300017408|Ga0182197_1116094All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis557Open in IMG/M
3300017412|Ga0182199_1083758Not Available711Open in IMG/M
3300017412|Ga0182199_1102873Not Available659Open in IMG/M
3300017422|Ga0182201_1067831Not Available653Open in IMG/M
3300017422|Ga0182201_1069971All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum647Open in IMG/M
3300017432|Ga0182196_1062077Not Available692Open in IMG/M
3300017439|Ga0182200_1067608Not Available686Open in IMG/M
3300017445|Ga0182198_1056012All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae814Open in IMG/M
3300017445|Ga0182198_1080644Not Available716Open in IMG/M
3300017445|Ga0182198_1154451Not Available561Open in IMG/M
3300017693|Ga0182216_1189658Not Available538Open in IMG/M
3300017693|Ga0182216_1195943Not Available531Open in IMG/M
3300028058|Ga0268332_1036724All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum666Open in IMG/M
3300028061|Ga0268314_1040321Not Available561Open in IMG/M
3300028262|Ga0268310_1009205Not Available877Open in IMG/M
3300032490|Ga0214495_1058112Not Available902Open in IMG/M
3300032502|Ga0214490_1115398All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum612Open in IMG/M
3300032514|Ga0214502_1004792All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum3485Open in IMG/M
3300032514|Ga0214502_1060412All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza1393Open in IMG/M
3300032551|Ga0321339_1092121All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum693Open in IMG/M
3300032590|Ga0214489_1003246All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1873Open in IMG/M
3300032590|Ga0214489_1024475Not Available896Open in IMG/M
3300032758|Ga0314746_1029862All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1214Open in IMG/M
3300032790|Ga0314731_1007903Not Available1537Open in IMG/M
3300032845|Ga0314727_1017703Not Available983Open in IMG/M
3300032845|Ga0314727_1038211Not Available664Open in IMG/M
3300032890|Ga0314747_1025461All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum896Open in IMG/M
3300032914|Ga0314750_1104741All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae659Open in IMG/M
3300032934|Ga0314741_1101867All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta662Open in IMG/M
3300032959|Ga0314738_1000970Not Available2984Open in IMG/M
3300033525|Ga0314758_1179459Not Available576Open in IMG/M
3300033526|Ga0314761_1000140Not Available5503Open in IMG/M
3300033530|Ga0314760_1007067All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum2232Open in IMG/M
3300033532|Ga0314767_1051839Not Available998Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere82.00%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated12.00%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere3.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009975Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaGHost-AssociatedOpen in IMG/M
3300009976Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009981Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009994Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028061Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028262Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032490Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032502Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032514Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032551Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032590Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_31MAY2016_LR3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032758Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032790Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032845Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032890Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032914Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032934Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032959Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033525Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033526Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033530Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033532Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0068859_10112372833300005617Switchgrass RhizosphereRFGPPERNTLRPMWWFVFPLVLFDVLEGSLFALI*
Ga0105249_1183094013300009553Switchgrass RhizosphereLAEIRTRWCKEHKDLDRFGPPERNTLHPVWWFVFPQVLFDVLERSLLALI*
Ga0105129_10585213300009975Switchgrass AssociatedMRWCQEHKDLDRFRPPERNTLRPVCWFVFPLVLFDLLEGSLLALI
Ga0105128_11489213300009976Switchgrass AssociatedKEHKDLDRFRPLERNTLRSVWWFVFPQVLFDVLEGSLFALI*
Ga0105135_10542913300009980Switchgrass AssociatedEHKDLDRFGPPERNTIRPMWWFVFPLVLFDVLEGSLLALI*
Ga0105135_11121923300009980Switchgrass AssociatedMIVGKGSTTSGTRWCKEHKDLDRFRPPERNTLRPVWWFVFPQVLFDILEGSLPALI
Ga0105135_12508213300009980Switchgrass AssociatedAEIRTRWCKEHKDLDRFGPPEYNTLHPVWWFVFPLALFDVFEGSLLALI*
Ga0105133_11813913300009981Switchgrass AssociatedHMDLDRFGPPERNTLRPVWWFVFPLVLFDVLEGSMFAFI*
Ga0105131_10946813300009989Switchgrass AssociatedHKDLDRFGPPERNTLPHVWWFVFPLVLFDVLEGSLFALI*
Ga0105131_14228013300009989Switchgrass AssociatedYKEHKDLDRFGPPERNTLRPMWWFVFPLVLFDILEVSLRALI*
Ga0105132_12166113300009990Switchgrass AssociatedDLDRFGPPEGNTLRPVWWFVFPLVLFDVLEGFLFALI*
Ga0105126_101247813300009994Switchgrass AssociatedLAEIRTQWCKEHKDLDRFRPPERNTLRPVWWFVFPQILFDVLEGPLVALI*
Ga0105139_107498423300009995Switchgrass AssociatedCKEHKYLDRFGPPERNTLRHVWWFVFPLILFDVLEGSLFALV*
Ga0105139_111556013300009995Switchgrass AssociatedMRWCKEHKDLDKFGSPERNTLHPVWWFVFPQVLSPILEGSL
Ga0134126_1296738913300010396Terrestrial SoilWCKKHKDLDRFGLPERNTLRSVWWFVFPLVLSNVLEGSLLALI*
Ga0182105_105964713300015290Switchgrass PhyllosphereHKDLDRFGPPERNTLRHVWWFVFPLILFDVLEGSLFALV*
Ga0182104_100853013300015297Switchgrass PhyllosphereKHKNLDRFGPPERNTLCPVWLFVFPLVLFDVLEGSLFALI*
Ga0182104_111299713300015297Switchgrass PhyllosphereRLGPPERNTLRPVWWFVFPQVLFDVLEGSLLTLI*
Ga0182184_106132813300015301Switchgrass PhyllosphereHKNLDRFGPPERNTLRPVWWFVFPLVLFDILEGSLLALI*
Ga0182184_108621523300015301Switchgrass PhyllosphereEHKDLDRFGPPERNTLRPVWWFVFPLVLSDVLEGPLLALI*
Ga0182180_102185213300015306Switchgrass PhyllosphereEHKDLDRFGPPEHNTLRLVWWFVVPLVLFDLLEGPLFALI*
Ga0182180_102239223300015306Switchgrass PhyllosphereWCKEHKDLDRFGLPERNTLRPVWWFVFPLVLFDVLEGSLFALI*
Ga0182162_105929013300015310Switchgrass PhyllosphereMRWCKEHKDLNRFGPPERNTLRPVWWFVFPHILFDVLEGSLRALIYLGGAG
Ga0182182_105770213300015311Switchgrass PhyllosphereMRWCTEHKDLDRFGPSERNTLRPVWWFVFPLVLFDLLEGPLFAL
Ga0182182_107505713300015311Switchgrass PhyllosphereMRWCKKHNDLDRFRPPERNTLRPVWWFVFPLILFDVLEGSL
Ga0182182_108908113300015311Switchgrass PhyllosphereHKDLDRFRPPQLNTLHPVWWFVFPLVLFDVLEGSLSALI*
Ga0182121_100539513300015316Switchgrass PhyllosphereGLAEIRTRWCKEHKDLDRFGPPKRNTLYSVWWFVFHLVLFDVLEGFLLTLI*
Ga0182136_106210713300015317Switchgrass PhyllosphereLAEIRTRWCKEHKDLDRFGPPERNTLRPVCWFVFPLVLFDVLEGSLFALI*
Ga0182136_112663013300015317Switchgrass PhyllosphereRFRPPERNTLRPVWCFVFPLVLFDVLEGSLFALI*
Ga0182136_113450413300015317Switchgrass PhyllosphereHKDLDRFGPPEHNTLRPVWWFVFPLVLFDLLEGPLFALI*
Ga0182165_107514023300015320Switchgrass PhyllosphereDLDRFGPPERNTLRPMWLFVFPLVLFDVLEGSLSALI*
Ga0182114_113426913300015327Switchgrass PhyllosphereMRWCKEHKDLDRFRPPERNSLRPMWWFVFPQVLFDLLEGS
Ga0182153_106153213300015328Switchgrass PhyllosphereKFRPPDRNTLRPMWCFVFPLVLFDVLEGPLVALI*
Ga0182153_106697813300015328Switchgrass PhyllosphereHKDLDRFGPPERNTLRPVWWFVFPLVLFDVLEGSLLALI*
Ga0182135_111911013300015329Switchgrass PhyllosphereMRWYKEHKDLDRLGLPEHNTLRPVWWFVFPQVFFDVLEGSLF
Ga0182152_107350913300015330Switchgrass PhyllosphereMGTRWCKEHKDLDTYGPPECNTLHPMWWFVSPLVLFDLLEGPLFAL
Ga0182117_104014023300015332Switchgrass PhyllosphereKEHKDLDRFRPPECNTLCPLWWFVFPQVLFDVLEGSLFSLI*
Ga0182147_106408213300015333Switchgrass PhyllosphereDLDRFGPPERNTLRLVWWFVFPLVLFDVLEGFLLALL*
Ga0182147_109874613300015333Switchgrass PhyllosphereRFEPPERNTLRPVWWFVSSLVLFDILEGSLTALI*
Ga0182132_111605123300015334Switchgrass PhyllosphereWCKEHKDLDRFGPPERNTLRPVCWFVFPLVLFDVLEGSLFALI*
Ga0182116_117662513300015335Switchgrass PhyllosphereMCCSGCKEHKDLDRFGPPERNTLRSVWWFVFPLVLFDVLEGPCS
Ga0182150_106677813300015336Switchgrass PhyllosphereMVQGTQGFRQFGPPERNTLRPVWWFVFPLVLFDVLEGSLSALIYLGG
Ga0182151_101729113300015337Switchgrass PhyllosphereDLDRFRQPERNTLRPVWWFVFPQVLFDILEGYLFALI*
Ga0182151_107623913300015337Switchgrass PhyllosphereMRWCREHKDLDRFGTPERNTLRPVWWFVFPQVLFDGLEGSLFALI
Ga0182151_107698813300015337Switchgrass PhyllosphereKEHKDLDRFGPPERNTLRHVWWFVFPLVLFDVLEGSPSALI*
Ga0182137_115162423300015338Switchgrass PhyllosphereMVQATQGLGRFRPQMLRNTLRPMWWFVFPLVLFDVL
Ga0182149_107675513300015339Switchgrass PhyllosphereKKHKDLDRFGPPERNTLRPVWLFVFPLVLFDVLEGSLFDLI*
Ga0182149_115376513300015339Switchgrass PhyllosphereGLAEIRMRWCKEHKGLDSFGPPERNTLRHVWWFVFPLILFDVLEGSLFALV*
Ga0182133_109112113300015340Switchgrass PhyllosphereCKEHKDLDRFRPPKRNTLRPVWWFVFPLVLFDVLKGSLFALI*
Ga0182133_116816523300015340Switchgrass PhyllosphereMRWCKEHKNLDRFRPPERNTLRPVWWFVFPLVLFHDLEGSLLA
Ga0182115_111427513300015348Switchgrass PhyllosphereEIRTRWCKEHKDLDRFGLPERNTLCPVWWFVFPLVLFDLLEGSLLALI*
Ga0182115_115358913300015348Switchgrass PhyllosphereDRFGPPERNTLRPVWLFVFPLVLFDILEGSLFALI*
Ga0182115_128978213300015348Switchgrass PhyllosphereDRFRPLEPNTLRPVWRFVFPQVLFDVLEGSLFALI*
Ga0182185_113554713300015349Switchgrass PhyllosphereKMRWCKEHKDLDRFGPPERNTIRPVWWLVFPLVLFDLLEGPLFALI*
Ga0182185_115210833300015349Switchgrass PhyllosphereMRWCTEHKDLDRFGPPERNTLRPVWWFVFPLVLFDLLEGSLF
Ga0182185_117287513300015349Switchgrass PhyllosphereMRWCKEHKDLDKFRPPDRNTLRPMWCFVFSLVLFDV
Ga0182185_127060213300015349Switchgrass PhyllosphereHKDLDRFGPPERNTLCLVWWFVFPLVLFDVLEGSLFALI*
Ga0182163_103507913300015350Switchgrass PhyllosphereMRWCKEHKDLDRFGPLERNTLRPVWWFIFPQVLFDVLEGSLL
Ga0182169_112786013300015352Switchgrass PhyllosphereHKDLDRFGPPEHNTLRPVWCFVFPLVLFDVLEGSLLALI*
Ga0182169_118717913300015352Switchgrass PhyllosphereKEHKDLDRFGPPERNTLRYVWWFVFPLVFFDLLEGSLLTLI*
Ga0182179_122191713300015353Switchgrass PhyllosphereKEHKDLDKFGPPERNILRPVWWFVFSLVLFDILEGSLLTLI*
Ga0182179_131458613300015353Switchgrass PhyllosphereIRMRWCKEHKDLDRFGPPERNTLCPVWWFVFPLVLFDVLEGSLLALI*
Ga0182167_112847323300015354Switchgrass PhyllosphereCKEHKDLDRFGPPERNTLRPVWWFVFPLVLFDRLEGSLFALI*
Ga0182167_124581613300015354Switchgrass PhyllosphereKDLDRFGPSERNTLRPVWWFVFPLVLFDVLEGSLFALI*
Ga0182167_125201523300015354Switchgrass PhyllosphereRFRPPERNTLHTVWWFVFPLVLFDVLEGSLLALI*
Ga0182167_132510623300015354Switchgrass PhyllosphereKEHKDLDRFGPPERNTLRPVCWFVFPLVLFDVLEGSLPTLI*
Ga0182197_111609413300017408Switchgrass PhyllosphereMQWCKEHKDLDRFRPPECNTLRPVWWFVFPLVLFDVLEGSL
Ga0182199_108375813300017412Switchgrass PhyllosphereKEHKDLDRFKPPECNILRPVWWFVFPQVLFDGLEGSLFALI
Ga0182199_110287313300017412Switchgrass PhyllosphereCKEHKDLDRFRPPERNTLRPVWWFVFPLVLFVVLEVSLLTLI
Ga0182201_106783113300017422Switchgrass PhyllosphereKDLDRFGPPERNTLHPVWWFVFPLVLVDVFEGSLPALI
Ga0182201_106997113300017422Switchgrass PhyllosphereDRFRPPERNTLRPVWWFVFALVLFDVSERSLLVLI
Ga0182196_106207713300017432Switchgrass PhyllosphereLAEIRTRWCKEHKDLDRFRPLERNTLRPVWWFVFPQVLFDVLEGSLFALI
Ga0182200_106760813300017439Switchgrass PhyllosphereKEHKDLDMFMPPEHNTLRPVWWFVFPMVLFDVLKGSLFALI
Ga0182198_105601213300017445Switchgrass PhyllosphereMRWGKEHKDLDRFRPPQLNTLHPVWWFVFPLVLFDVL
Ga0182198_108064423300017445Switchgrass PhyllosphereHKDLDRFGPPECNTLHLVCWFVFPLVLFDLLEGSLLALI
Ga0182198_115445113300017445Switchgrass PhyllosphereDLDRFRPPERNTLRPVWLFVFPQILFDVLVGSLLAIL
Ga0182216_118965813300017693Switchgrass PhyllosphereEMRTRLCKEHKDLDRFGLSEGNTLRPVWWFVFPLVLFHDLEGSLLALI
Ga0182216_119594313300017693Switchgrass PhyllosphereDRFRPPERNTLRPVWWFVFPLVLFDVLEESLFALI
Ga0268332_103672413300028058PhyllosphereGRAEIITRWSKEHKDLDSFGPPECNTLRPVWWFVFPLVLFDLLEGSLLALI
Ga0268314_104032113300028061PhyllosphereRMRWCKEHKDLDRFGPPERNNLRPVWWFVFPLVLFDALEGSLFALI
Ga0268310_100920523300028262PhyllosphereDLDRFGPPERNTIRHVWWFVFPLVLFDVLEGSLLALI
Ga0214495_105811213300032490Switchgrass PhyllosphereWCKEHKDLDRFGPPERNTLRPVCWFVFPLVLFDLLEGFPFALI
Ga0214490_111539823300032502Switchgrass PhyllosphereCKEHKDLDRFGPPERNTLRPVWWFVFALVLFDVLEGS
Ga0214502_100479253300032514Switchgrass PhyllosphereMRWCKEHKDLDRFGPLERNTLRPVWWFVFPLVLFDVLEGSLLALI
Ga0214502_106041213300032514Switchgrass PhyllosphereEIRTRWCKEHKDLDRFGPPERNTLRPVWWFVFPLILFDVLEGSLLALI
Ga0321339_109212123300032551Switchgrass PhyllosphereMRWCKEHKDLDRFRPPERNSLRPMWWFVFPQVLFDLLEGSLSA
Ga0214489_100324653300032590Switchgrass PhyllosphereMRWCKEHKDLDRFGPPERNTLRPVCWFVFPLVLFDLLEGFP
Ga0214489_102447513300032590Switchgrass PhyllosphereDLDRFGPPERNTLRPVCWFVFPLVLFDLLEGFPFALI
Ga0314746_102986213300032758Switchgrass PhyllosphereHKDLDRFRPPEHNTLRPVWWFVFPLVLFDVLKGSLFGLI
Ga0314731_100790313300032790Switchgrass PhyllosphereMRWCKEHKDLDRFGPSERNTLRHMWWFVFPLDLFDILEGSL
Ga0314727_101770313300032845Switchgrass PhyllosphereEIRTRWCKEHNDLDRFGPPEGNTLRLVWWFVFPLVLFDVLEGFLFALI
Ga0314727_103821113300032845Switchgrass PhyllosphereMRWCKEHKDLDRFGPPERNILRPVWWFVFSLVLFDVLEES
Ga0314747_102546113300032890Switchgrass PhyllosphereVIRTRWCKEHKDLDRFGPPERNTLRPVWWFVFPLILFDVLEGSLF
Ga0314750_110474123300032914Switchgrass PhyllosphereHKDLDRFGPPERNTLRPMWWFVFPLVLFDVLEGSLFALI
Ga0314741_110186723300032934Switchgrass PhyllosphereGTQELDRFGPPERNTLRPVWWFVFPLVLFDVLEGSMLALI
Ga0314738_100097033300032959Switchgrass PhyllosphereMVQGTQELDRFGPPERNTLRPVWWFVFPLVLFDVLEGSLLALI
Ga0314758_117945913300033525Switchgrass PhyllosphereTRWCKEHMDLDRFGPPERNTLRPVWWFVFPLVLFDVLEGSLFALI
Ga0314761_100014013300033526Switchgrass PhyllosphereMCKEHKDLDRFGPPERNTLRPVWWFVFPLVLFDDLEGSLFALSL
Ga0314760_100706743300033530Switchgrass PhyllosphereCKEHKDLNRFGPLERNTLRPVWWFVFPLVLFDVLEGSLLALI
Ga0314767_105183923300033532Switchgrass PhyllosphereEIRTRWCKEHKDLDRFRPPEHNTLRPVWWFVFPLVLFDVLKGSLFGLI

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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