Metagenome Family F104212

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104212
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	90 residues
Representative Sequence	PDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Number of Associated Samples	61
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.00 %
% of genes near scaffold ends (potentially truncated)	55.00 %
% of genes from short scaffolds (< 2000 bps)	83.00 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (65.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (64.000 % of family members)
Environment Ontology (ENVO)	Unclassified (90.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (64.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120. 1Ga0066388_1000380884 2Ga0066388_1001773843 3Ga0066388_1020733681 4Ga0066388_1070102832 5Ga0066903_1005926163 6Ga0066903_1045330892 7Ga0126380_109007851 8Ga0126384_114291632 9Ga0126378_123904852 10Ga0124844_10355353 11Ga0182036_104551551 12Ga0182041_100487754 13Ga0182041_102327053 14Ga0182041_117673211 15Ga0182033_101288392 16Ga0182035_105764812 17Ga0182032_106719282 18Ga0182032_112946241 19Ga0182034_106264052 20Ga0182040_110944522 21Ga0182040_113633542 22Ga0182039_100036764 23Ga0182039_102724965 24Ga0182038_103073282 25Ga0318516_100041483 26Ga0318516_100665174 27Ga0318541_100121105 28Ga0318541_101140852 29Ga0318541_102835163 30Ga0318541_104099501 31Ga0318538_100068524 32Ga0318538_102454852 33Ga0318538_102609531 34Ga0318571_100672513 35Ga0318528_106098682 36Ga0318573_102246181 37Ga0310915_102102253 38Ga0318555_102460741 39Ga0318574_101666371 40Ga0318496_101463924 41Ga0306917_101959622 42Ga0318501_102419142 43Ga0318501_104005381 44Ga0318501_104676411 45Ga0318501_108321391 46Ga0306918_101519824 47Ga0318502_101494521 48Ga0318502_102949391 49Ga0318502_105916101 50Ga0318494_103841041 51Ga0318554_102815111 52Ga0318509_107514122 53Ga0318546_100623033 54Ga0318546_106679003 55Ga0318546_109586771 56Ga0318548_100549392 57Ga0318548_103374573 58Ga0318557_105043891 59Ga0318568_103421591 60Ga0318567_103275991 61Ga0310917_109392051 62Ga0318511_100134461 63Ga0318511_103199463 64Ga0318527_104818742 65Ga0306919_113741111 66Ga0318544_100143251 67Ga0318544_102434722 68Ga0306925_102181562 69Ga0306925_112066631 70Ga0318536_100857611 71Ga0318520_107213021 72Ga0318520_108937562 73Ga0310912_100838186 74Ga0310913_107643781 75Ga0310913_108195061 76Ga0310913_110041062 77Ga0310910_101815763 78Ga0310910_113412132 79Ga0310909_101553003 80Ga0310909_105677163 81Ga0310909_113346381 82Ga0318531_104083222 83Ga0306922_100749702 84Ga0306922_102402794 85Ga0306922_103591331 86Ga0306922_118091081 87Ga0310911_109224151 88Ga0318532_100949661 89Ga0318570_102602792 90Ga0318575_105799492 91Ga0318533_102502342 92Ga0318533_108927882 93Ga0318533_113058472 94Ga0318504_100138871 95Ga0318510_102415801 96Ga0318513_103461402 97Ga0318577_100137081 98Ga0306920_1003624575 99Ga0306920_1003693321 100Ga0306920_1034436932
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120. 1Ga0066388_1000380884 2Ga0066388_1001773843 3Ga0182040_113633542 4Ga0182039_102724965 5Ga0182038_103073282 6Ga0318573_102246181 7Ga0318546_109586771 8Ga0318544_102434722 9Ga0310913_108195061 10Ga0310909_105677163
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88. 1Ga0318546_106679003 2Ga0066388_1000380884 3Ga0066388_1020733681 4Ga0066388_1070102832 5Ga0066903_1005926163 6Ga0066903_1045330892 7Ga0182041_102327053 8Ga0182041_117673211 9Ga0182039_100036764 10Ga0182039_102724965 11Ga0318502_101494521 12Ga0318502_102949391 13Ga0318502_105916101 14Ga0318509_107514122 15Ga0318546_109586771 16Ga0318548_103374573 17Ga0306919_113741111 18Ga0306925_112066631 19Ga0310913_108195061 20Ga0310909_101553003 21Ga0306922_102402794 22Ga0318533_113058472 23Ga0306920_1034436932
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.77% β-sheet: 12.82% Coil/Unstructured: 56.41%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.4.6.0: automated matches	d5vfaa2	5vfa	0.72121
a.4.6.0: automated matches	d4ixaa_	4ixa	0.72047
a.4.6.1: PhoB-like	d1ys6a1	1ys6	0.71897
a.4.6.0: automated matches	d5ju7a1	5ju7	0.71338
a.4.6.0: automated matches	d2hwva1	2hwv	0.70607

Showing 1 to 5 of 5 entries

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF05869	Dam	8.00
PF05063	MT-A70	6.00
PF10926	DUF2800	5.00
PF13481	AAA_25	2.00
PF00476	DNA_pol_A	2.00
PF02075	RuvC	1.00
PF00486	Trans_reg_C	1.00
PF08774	VRR_NUC	1.00
PF03819	MazG	1.00

Showing 1 to 9 of 9 entries

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COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	12.00
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	2.00
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.00 %
Unclassified	root	N/A	35.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.00 %
Unclassified	root	N/A	35.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	19.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	16.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.00 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	16.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.00 %
Unclassified	root	N/A	35.00 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	16.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.00 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.00 %
Unclassified	root	N/A	35.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100038088	All Organisms → cellular organisms → Bacteria	4690	Open in IMG/M
3300005332\|Ga0066388_100177384	All Organisms → cellular organisms → Bacteria → Proteobacteria	2736	Open in IMG/M
3300005332\|Ga0066388_102073368	Not Available	1022	Open in IMG/M
3300005332\|Ga0066388_107010283	Not Available	567	Open in IMG/M
3300005764\|Ga0066903_100592616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1918	Open in IMG/M
3300005764\|Ga0066903_104533089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300010043\|Ga0126380_10900785	Not Available	735	Open in IMG/M
3300010046\|Ga0126384_11429163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300010361\|Ga0126378_12390485	Not Available	603	Open in IMG/M
3300010868\|Ga0124844_1035535	Not Available	1637	Open in IMG/M

Showing 1 to 10 of 100 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	7.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.00%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	90.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	64.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.00%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M

Showing 1 to 10 of 61 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1000380884	3300005332	Tropical Forest Soil	VAQPDICPHCGQPIVPAGLALPAIKARIYEAVRRRPGISAETLRGIVWDDPSGGPDCRHTIYVHIYQTNRILAPHGLKIRFQNGYRIRSAS*
Ga0066388_1001773843	3300005332	Tropical Forest Soil	MMRADICSHCGQPIVPPVRDLTPIKQRILDAVKRRPGISAEELRSIVWDDPAGGPECRHTIFVHISQLNRALALHGLTMRSEDGGYRIRSMA*
Ga0066388_1020733681	3300005332	Tropical Forest Soil	MTEVSKTCPICGQPIVPPVRDLSPIKQRILEAVKRRPGVSAEELRSIVWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSE
Ga0066388_1070102832	3300005332	Tropical Forest Soil	MKIHQSAICPTCNQPIVPPIPDLTPLKQRILEAVKRRPGISAEELRAAVWDDPSGGPECRHTIFVHISQLNHVLALHGLTMRSEGGGYRIRAVS*
Ga0066903_1005926163	3300005764	Tropical Forest Soil	MMRAEICSHCGQPIVPPVRDLTPIKQRILDAVKRRPGISAEELRCAVWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIKSTS*
Ga0066903_1045330892	3300005764	Tropical Forest Soil	MIDLPICPCCGQPIVPPVPDLTPIKQRILNAVKRRPGISAEELRAIVWDDPSGGPECRHTIFVHISQLNRALALHGLMMRSEAGGYRIRGVR*
Ga0126380_109007851	3300010043	Tropical Forest Soil	QPIVPAGLALPAIKARIYEAVRRRPGISAETLRGIVWDDPSGGPDCRHTIYVHIYQTNRILAPHGLKIRFQNGYRIRSAS*
Ga0126384_114291632	3300010046	Tropical Forest Soil	MTDPPICPCCGQPIVPPVPDLTPIKQRILDAVKRRPGTSAEELRAIVWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEAGGYQIRGVR*
Ga0126378_123904852	3300010361	Tropical Forest Soil	MMRADICSHCGQPIVPPVRDLTPIKQRILDAVKRRPGISAEELRSIVWDDPAGGPECRHTIFVHISQLNRALALHGLTMRS
Ga0124844_10355353	3300010868	Tropical Forest Soil	VAQPDICPHCGQPIVPAGLALPAIKARIYEAVRRRPGISAETLRGIVWDDPSGGPDCRHTIYVHIYQTNRILAPHGLKIRFQ
Ga0182036_104551551	3300016270	Soil	PDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIRVVP
Ga0182041_100487754	3300016294	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYR
Ga0182041_102327053	3300016294	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0182041_117673211	3300016294	Soil	PAICSTCGQPIVPPVPDLTPLKRRILDLVKRHPGISADELRLLVWDDPSGGPECRHTIFVHISQLNRVLALYGLTMRSQGGGYRIRGVK
Ga0182033_101288392	3300016319	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVS
Ga0182035_105764812	3300016341	Soil	MKPEPEICPTCGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0182032_106719282	3300016357	Soil	CPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0182032_112946241	3300016357	Soil	QPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0182034_106264052	3300016371	Soil	MTARQVEVCSCCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVS
Ga0182040_110944522	3300016387	Soil	MTQGRICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0182040_113633542	3300016387	Soil	AARDDRISHAAARAALGEKPMTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0182039_100036764	3300016422	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLMMRSEGGGYRVRTAP
Ga0182039_102724965	3300016422	Soil	PIPDLTPLKQRILESVKRRPGISAEQLRSLVWDDPSGGPEDRKVLHVHVSQLNRLLAPRGICVRSEGGGYRVKAVS
Ga0182038_103073282	3300016445	Soil	MDQATGIPIESALKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAAATESGPYREWGP
Ga0318516_100041483	3300031543	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRVRTAP
Ga0318516_100665174	3300031543	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318541_100121105	3300031545	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318541_101140852	3300031545	Soil	MISRQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIRVVP
Ga0318541_102835163	3300031545	Soil	LKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVS
Ga0318541_104099501	3300031545	Soil	SCCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318538_100068524	3300031546	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELCATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRVRTAP
Ga0318538_102454852	3300031546	Soil	MTARQVEVCSCCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318538_102609531	3300031546	Soil	PMTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318571_100672513	3300031549	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGY
Ga0318528_106098682	3300031561	Soil	VCPRCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0318573_102246181	3300031564	Soil	QPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRVRTAP
Ga0310915_102102253	3300031573	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0318555_102460741	3300031640	Soil	MLTKTNICSACGQPIVPPVPDLTPIKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYR
Ga0318574_101666371	3300031680	Soil	DRISHAAARAALGEKPMTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318496_101463924	3300031713	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVAS
Ga0306917_101959622	3300031719	Soil	MKPEPEICPTCGSPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0318501_102419142	3300031736	Soil	MKPEPEICPTCGSPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYR
Ga0318501_104005381	3300031736	Soil	MDQATGTPIESALKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGA
Ga0318501_104676411	3300031736	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYR
Ga0318501_108321391	3300031736	Soil	TCGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0306918_101519824	3300031744	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSA
Ga0318502_101494521	3300031747	Soil	ARDDRISHAAARAALGEKPMTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318502_102949391	3300031747	Soil	RQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIRVVP
Ga0318502_105916101	3300031747	Soil	VEVCSCCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318494_103841041	3300031751	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAAATESGPYREWGP
Ga0318554_102815111	3300031765	Soil	MTARQVEVCSCCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318509_107514122	3300031768	Soil	MDQATGTPIESALKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAAATESGPYREWGP
Ga0318546_100623033	3300031771	Soil	VPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRYTIFVHISQLNRALAEFGLTMRSEGGGYRIRAVS
Ga0318546_106679003	3300031771	Soil	PDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318546_109586771	3300031771	Soil	AQSAGGSGAFASDGGDMLTHSKPNICSACGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRASVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVP
Ga0318548_100549392	3300031793	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318548_103374573	3300031793	Soil	LKICPTCGSPIVPPVPGLTPLKQRILDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRIRTVP
Ga0318557_105043891	3300031795	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVP
Ga0318568_103421591	3300031819	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRS
Ga0318567_103275991	3300031821	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRATS
Ga0310917_109392051	3300031833	Soil	ACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVS
Ga0318511_100134461	3300031845	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVS
Ga0318511_103199463	3300031845	Soil	EPEICPTCGPPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRPTVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0318527_104818742	3300031859	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0306919_113741111	3300031879	Soil	MKPEICPTCGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0318544_100143251	3300031880	Soil	DICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRVRTAP
Ga0318544_102434722	3300031880	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRAIVWDDPSGGPECRHTIFVHISQLNRALALHGLM
Ga0306925_102181562	3300031890	Soil	MLTKTNICSACGQPIVPPVPDLTPIKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRIRTAP
Ga0306925_112066631	3300031890	Soil	MLERNSVEICPHCRQPLVPPVPNLTPIKQRILDTVKRRPGISAEELRSIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGRGYRIRAVS
Ga0318536_100857611	3300031893	Soil	MTPKPEICPTCRQPIVPPVTDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318520_107213021	3300031897	Soil	MTARQVEVCSCCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0318520_108937562	3300031897	Soil	MLTHSKPNICSACGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRASVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVP
Ga0310912_100838186	3300031941	Soil	MDQATGTPIESALKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAA
Ga0310913_107643781	3300031945	Soil	EICPTCGPPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0310913_108195061	3300031945	Soil	MTARTPKTCSACGQPIIPPIPDLPPTKLRILETVKRRPGISAEELRSLVWDDPSGGPEDRKVLHVHVSQLNRLLAERGIVVRSEGGGYRIRST
Ga0310913_110041062	3300031945	Soil	CGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGRGYRIRAVS
Ga0310910_101815763	3300031946	Soil	MKPEPEICPTCGPPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0310910_113412132	3300031946	Soil	MLIKPDICSACGQPIVPPVPGLTPLKQRILDTVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNHSLAELGLTMRSEGGGYRIRTVS
Ga0310909_101553003	3300031947	Soil	MKPEPEICPTCGSPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVS
Ga0310909_105677163	3300031947	Soil	MKPELKICPTCGSPIVPPVPGLTPLKQRILDTVKRRPGISAEELRATVWDDPSGGPECRYTIFVHISQLNRSLAEFGLTMRSE
Ga0310909_113346381	3300031947	Soil	VPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0318531_104083222	3300031981	Soil	MISRQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLT
Ga0306922_100749702	3300032001	Soil	VPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVS
Ga0306922_102402794	3300032001	Soil	SQSRQPEICSMCGQPIVPPVPDLTPIKQRILNIVKRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGRGYRIRAVS
Ga0306922_103591331	3300032001	Soil	PVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0306922_118091081	3300032001	Soil	EICPTCGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0310911_109224151	3300032035	Soil	GQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318532_100949661	3300032051	Soil	MISRQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIR
Ga0318570_102602792	3300032054	Soil	MISRQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRLRVVP
Ga0318575_105799492	3300032055	Soil	PPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0318533_102502342	3300032059	Soil	LKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAAATESGPYREWGP
Ga0318533_108927882	3300032059	Soil	VPPVPPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0318533_113058472	3300032059	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRKILDAVRRRPGISAEELRGIVWNDPSGGPECRHTIFVHISQLNNALALHGLTMRSEGGGYRIRSVP
Ga0318504_100138871	3300032063	Soil	QPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318510_102415801	3300032064	Soil	CSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318513_103461402	3300032065	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318577_100137081	3300032091	Soil	PVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0306920_1003624575	3300032261	Soil	MKPELKICPTCGSPIVPPVPGLTPLKQRILDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRIRTVP
Ga0306920_1003693321	3300032261	Soil	CSACGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRASVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVP
Ga0306920_1034436932	3300032261	Soil	SMIEKLERNSAKTCPACGQPIVPPVPDLTPIKQCILDAVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNHALALHGLTMRSEGGGYRIRATS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104212

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences