NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104096

Metagenome / Metatranscriptome Family F104096

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104096
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 52 residues
Representative Sequence GQGFRALLEKDPEVMKRIGGRLDEIFDPWAGLEHTDLAYERLQLGVKAR
Number of Associated Samples 87
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.98 %
% of genes near scaffold ends (potentially truncated) 97.03 %
% of genes from short scaffolds (< 2000 bps) 90.10 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.446 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(19.802 % of family members)
Environment Ontology (ENVO) Unclassified
(25.743 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.406 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.
1P1_DRAFT_00578800
2AL16A1W_100823472
3A30PFW6_12382992
4JGI20174J14864_10044011
5A2065W1_114309982
6JGI12635J15846_107823932
7JGI12053J15887_102122782
8JGI12053J15887_103918161
9JGIcombinedJ26739_1006486872
10JGI25390J43892_100179234
11JGI25386J43895_100255734
12JGI25617J43924_103069361
13Ga0066679_109547861
14Ga0066690_110159552
15Ga0066685_109119161
16Ga0070703_101091572
17Ga0070714_1013003961
18Ga0070694_1009461051
19Ga0070694_1018634281
20Ga0070708_1009383472
21Ga0070708_1009629101
22Ga0070708_1015421632
23Ga0066686_108739312
24Ga0066689_104427252
25Ga0070706_1000783491
26Ga0070699_1002467741
27Ga0070697_1008724861
28Ga0066703_102390901
29Ga0066654_100248631
30Ga0066903_1088423342
31Ga0075026_1003272622
32Ga0075026_1006370732
33Ga0075522_104644861
34Ga0066660_103007453
35Ga0066660_105062552
36Ga0079220_111868962
37Ga0075436_1001264021
38Ga0079219_104103661
39Ga0079219_110690692
40Ga0099830_100714031
41Ga0099827_100785475
42Ga0066709_1003685744
43Ga0066709_1023782452
44Ga0126382_125369582
45Ga0127460_10789462
46Ga0126370_112477652
47Ga0126370_115217461
48Ga0126378_101373485
49Ga0126378_122595291
50Ga0134126_117968322
51Ga0137392_101865204
52Ga0137391_106106592
53Ga0137391_115061642
54Ga0120167_10980062
55Ga0137389_107187782
56Ga0137388_108549262
57Ga0137376_104308182
58Ga0137379_107754402
59Ga0137370_100719171
60Ga0137368_106324451
61Ga0137390_101602761
62Ga0134052_12769063
63Ga0137396_112597772
64Ga0137359_116171022
65Ga0137359_116171042
66Ga0137419_103585242
67Ga0137416_102878901
68Ga0120150_10152361
69Ga0120155_11731531
70Ga0120155_11773351
71Ga0120123_10496052
72Ga0120109_11637341
73Ga0120125_11906262
74Ga0167655_10458011
75Ga0137418_101116695
76Ga0134085_100819703
77Ga0066669_123631541
78Ga0193756_10479082
79Ga0193730_10233972
80Ga0215015_110062932
81Ga0210384_100882691
82Ga0208848_10557912
83Ga0207699_111356911
84Ga0207646_109832072
85Ga0207687_104546531
86Ga0209238_11364921
87Ga0209473_10792814
88Ga0209158_10663254
89Ga0209806_11460342
90Ga0209160_10588255
91Ga0209376_11564151
92Ga0209588_10471611
93Ga0209011_11661572
94Ga0209689_11874651
95Ga0209689_12540082
96Ga0209166_100971771
97Ga0209701_101590351
98Ga0209168_106437802
99Ga0307282_104007761
100Ga0307468_1016901171
101Ga0318546_112659651
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 38.96%    β-sheet: 0.00%    Coil/Unstructured: 61.04%
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Variant

51015202530354045GQGFRALLEKDPEVMKRIGGRLDEIFDPWAGLEHTDLAYERLQLGVKARSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
44.6%55.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Glacier Forefield Soil
Grasslands Soil
Surface Soil
Agricultural Soil
Arctic Peat Soil
Permafrost
Soil
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Populus Rhizosphere
Miscanthus Rhizosphere
4.0%19.8%5.0%3.0%3.0%3.0%9.9%15.8%6.9%5.0%10.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
P1_DRAFT_005788002088090004SoilLIAGPAXXXXFRGLLEQNAEVMTRIGSKLDEVFDPWAGLEHTDLAYERLGLGAKAQ
AL16A1W_1008234723300000887PermafrostVLEKDSEVMSRIGTRMLEIFDPWTGLEHTDLAYDRLGLGSGALKK*
A30PFW6_123829923300001361PermafrostLEADPEVMSRIGTKLDEVFNPWAGLEHTDLAFEKLGLGVNTR*
JGI20174J14864_100440113300001414Arctic Peat SoilYLVVQKAAMQAMDDAGGAQGVVDPGFRSLLEQNHEVMSRIGAKLDQVFDPWAGLEHTDLAYERLAIGRALRT*
A2065W1_1143099823300001537PermafrostEDGPGFRSALEKDNEVMSRIGPQMEGLFDPWAGLEHTDLAYDRLGLGSEARKK*
JGI12635J15846_1078239323300001593Forest SoilAMAEDGAGFRLRLENDKEVMSRIGTRMEEIFDPWTGLEHTDLAYDRLGLGSEVRHK*
JGI12053J15887_1021227823300001661Forest SoilRGFRAILEQDKEVMSRIGTRLXEVFDPWVGLEHTDLAYEKLGLGAKAH*
JGI12053J15887_1039181613300001661Forest SoilEMLEKDREVMTRIGTRMEEIFNPWTGLEHTDLAYDRLGLEAKAK*
JGIcombinedJ26739_10064868723300002245Forest SoilAMKALDEDGPGFRALLEKDPTVMERIGGRLDEVFDPWAGLEHTDLAYDRLQLGVKAR*
JGI25390J43892_1001792343300002911Grasslands SoilGDGFRALLEKNEDVTNRIGPRLDEVFDPWAGLEHTDLAYQRLGLGVPAN*
JGI25386J43895_1002557343300002912Grasslands SoilENSGDGFRALLEKNEDVTKRIGPRLDEVFDPWAGLEHTDLAYQRLGLGVPAN*
JGI25617J43924_1030693613300002914Grasslands SoilPGFRALLEKDAEVMKRIGGRLDDVFDPWAGLEHTDLAYDRLGLGVPR*
Ga0066679_1095478613300005176SoilLLEKNDEVMRRIGSKLEAVFDPWAGLEHTDLAYERLGLGVPTK*
Ga0066690_1101595523300005177SoilMEAMQESGAGFRTLLEKNDEVMRRIGSKLEAVFDPWAGLEHTDLAYERLGLGVPTK*
Ga0066685_1091191613300005180SoilREAGFRDLLEKNDGVQRRIGARMDKVFDPWAGLEHTDLVYERLGLGVAAP*
Ga0070703_1010915723300005406Corn, Switchgrass And Miscanthus RhizospherePGFRELLEKDADVMKRIGGHLEEVFDPWAGLEHTDLAYDRIGLGRALRA*
Ga0070714_10130039613300005435Agricultural SoilRGFRELLEKDEEVARLIGRKMDQVFDPWAGLEHTDLAYERLGLGVTAK*
Ga0070694_10094610513300005444Corn, Switchgrass And Miscanthus RhizosphereLVVQKAALDATAGQGPGFRQTLEANPEVMRRIGGRLDEVFDPWAGLEHTELAYERLGLGVKAI*
Ga0070694_10186342813300005444Corn, Switchgrass And Miscanthus RhizosphereEKDADVMKRIGAHLEEVFDPWAGLEHTDLAYDRIGLGRALRA*
Ga0070708_10093834723300005445Corn, Switchgrass And Miscanthus RhizosphereMEALQEDGPGFRAQVEKNKDVAGRLGPRLDAAFDPWAGLEHTDLAFDRLGLGVETR*
Ga0070708_10096291013300005445Corn, Switchgrass And Miscanthus RhizosphereGQGFRALLEKDPEVMKRIGGRLDEIFDPWAGLEHTDLAYERLQLGVKAR*
Ga0070708_10154216323300005445Corn, Switchgrass And Miscanthus RhizosphereAYLVVQKAALDATAGQGPGFRQTLEANPEVMRRIGGRLDEVFDPWAGLEHTELAYERLGLGVKAI*
Ga0066686_1087393123300005446SoilAGFRDLLEKNDGVQRRIGARMDKVFDPWAGLEHTDLVYERLGLGVAAP*
Ga0066689_1044272523300005447SoilILEKDAEVMRRIGARLDEVFDPWAGLEHTDLAYERLGLGVRR*
Ga0070706_10007834913300005467Corn, Switchgrass And Miscanthus RhizosphereKEFRALLQENDEVMRRIGDRLDQLFDAWAGLEHTDLAYERLGLGVSAK*
Ga0070699_10024677413300005518Corn, Switchgrass And Miscanthus RhizosphereQEDGPGFRAQMEKNKDVAGRLGPRLDAAFDPWAGLEHTDLAFDRLGLGVETR*
Ga0070697_10087248613300005536Corn, Switchgrass And Miscanthus RhizospherePGGKEFRALLQENDEVTRRIGDRLDQLFDPWAGLEHTDLAYERLGLGVSAK*
Ga0066703_1023909013300005568SoilLENDAEVMKRIGAHLDAVFDPWAGLEHTDLAYERLQLGVKSR*
Ga0066654_1002486313300005587SoilGFRAQVESNPEVSSRIGERLDAVFDPWAGLEHADLAYDRLGLGVRAR*
Ga0066903_10884233423300005764Tropical Forest SoilQKAAMQAMEGGGPGFRTLLEKNDEVMQRIGGKLESVFDPWAGLEHTDLAYERLRLGVQA*
Ga0075026_10032726223300006057WatershedsEEDGPGFRKLLEGDTEVMSRIGSMINEMFNPWAGLEHTDLAYERLGLGVKTN*
Ga0075026_10063707323300006057WatershedsFRTILEKNTEVMGRIGGRLDEVFDPWAGLEHTEIAYERLGLGSALRS*
Ga0075522_1046448613300006638Arctic Peat SoilGDGAGFRKLLEQDAEVMSRIGSKLDEVFDPWAGLEHTDLAYERLGLAVRAK*
Ga0066660_1030074533300006800SoilEGPGFRSLVEKDAAVRSRIGDRLEQVFDPWAGLERTDLAYERLGLGVKSR*
Ga0066660_1050625523300006800SoilALLERNDEVSGRIGPKMDHLFDPWRGLEHTDLAYERLGLGVRTTT*
Ga0079220_1118689623300006806Agricultural SoilVQKAAMQAMEPGGKEFRALLQENDEVMRRIGDRLDHLFDPWAGLEHTDLAYERLGLGVSAK*
Ga0075436_10012640213300006914Populus RhizosphereTILEKDADVARRIGGRMDEVFDPWAGLEHTDLAYERLGLGVNAK*
Ga0079219_1041036613300006954Agricultural SoilRSGGQGGQGFRTLLQENDEVMKRIGGKLDQVFDPWAGLEHTDLAYERLGLGVSAK*
Ga0079219_1106906923300006954Agricultural SoilGGIGFRELLEKNADVVQRIGPMLATVFDPWTGLEHTDLAYERLGLGALK*
Ga0099830_1007140313300009088Vadose Zone SoilALLEDDAEVMKRIGARLDEIFDPWAGLEHTNLAFDRLGLGAKAR*
Ga0099827_1007854753300009090Vadose Zone SoilIEKDAEVMKRIGGRLDDVFDPWAGLEHTELAYERVGLAVPAE*
Ga0066709_10036857443300009137Grasslands SoilDGPGFRTMLEKDEEVMKRIGSRMEEVFDPWTGLEHTDLAYERLGLGAKAK*
Ga0066709_10237824523300009137Grasslands SoilGGKCREILEKDAEVMTRIGVRLDEVFDPWAGLEHTDLAYERLGLGVRR*
Ga0126382_1253695823300010047Tropical Forest SoilRRLLERDEEVSRRIGPQMDRVFDPWAGLEHTDLAYEKLGLGVRAK*
Ga0127460_107894623300010114Grasslands SoilEKNDGVQRRIGARMDKVFDPWAGLEHTDLVYERLGLGVAAP*
Ga0126370_1124776523300010358Tropical Forest SoilVQKAALEAMEGSGPGFRARLEKNDGVMRRIGSKMDAVFDPWQGLEHTDLAYERIGLGVASK*
Ga0126370_1152174613300010358Tropical Forest SoilTGFRALLESDEEVVRRIGTRMDSVFDPWAGLEHTDLAYERLGLGVTAK*
Ga0126378_1013734853300010361Tropical Forest SoilFRALLEKDTEVTRRIGPKLDTVFDPWQGLEHTDLAYERIGLGVTTK*
Ga0126378_1225952913300010361Tropical Forest SoilAMQAMDSQAVGFRTLLENDDEVRQRIGSRIDQIFDPWSGLEHTDLAYERLGLGVQA*
Ga0134126_1179683223300010396Terrestrial SoilYLVVQKAALDATAGEGPGFRQTLEANPEVMRRIGGRIDEVFDPWAGLEHTELAYERLGLGAKAI*
Ga0137392_1018652043300011269Vadose Zone SoilRALIEKDAEVMKRIGGRLDDVFDPWAGLEHTELAYERVGLAVPAE*
Ga0137391_1061065923300011270Vadose Zone SoilFRELLEKDADVMKRIGPHLEEVFDPWAGLEHTDLAYERLRLGVKTS*
Ga0137391_1150616423300011270Vadose Zone SoilGGPGFRSQIEKNRAVMDRIGARLDQVFDPWSGLEHTDLAYDRLGLAVKTR*
Ga0120167_109800623300012001PermafrostMGPAFRSALEKDNEVMSRIGPQMEGLFDPWAGLEHTDLAYDRLGLGTEARKK*
Ga0137389_1071877823300012096Vadose Zone SoilDEEGPGFRALLEKDGEVMKRIGGRLDDVFDPWAGLEHTDLAYDRLGLGVPR*
Ga0137388_1085492623300012189Vadose Zone SoilLLEKDDGVMKRIGPHLEEVFDPWAGLEHTDLAYDRLGLGVKTT*
Ga0137376_1043081823300012208Vadose Zone SoilEGSGPGFRVLLEKDEELMKRIGPRMDKIFDPWTGLEHTDLAYERLGLAVRTT*
Ga0137379_1077544023300012209Vadose Zone SoilLEKDTEVVSRIGSKLDEVFDPWKGLEHTELAFDRLNLGSALPGVKAH*
Ga0137370_1007191713300012285Vadose Zone SoilMQAMEDPGAGFRALLEKNEDVMKRIGSKMDQVFDPWAGLEHTDLAYERLGLAVTTK*
Ga0137368_1063244513300012358Vadose Zone SoilILEKDTEVVSRIGSKLDEVFDPWKGLEHTELAFDRLNLGSALPGVKAH*
Ga0137390_1016027613300012363Vadose Zone SoilALDEEGAGFRALLEKDPEVMGRIGGRLDEIFDPWAGLEHTELAYDRIGLGVKTR*
Ga0134052_127690633300012393Grasslands SoilDNPGTGFRTLLENNDEVANRIGTRMDQAFDPWSGLEHTDLAYERLGLGVTAK*
Ga0137396_1125977723300012918Vadose Zone SoilVQKAAMQALDEDGAGFRALIEKEAEVMKRIGGRLDEVFDPWAGLEHTDLAYERLGLAVPAE*
Ga0137359_1161710223300012923Vadose Zone SoilAMQALEGDGPGFRSLLEKDADVMKRIGSRLDEVFDPWAGLEHADLAYDRLGLGVKTT*
Ga0137359_1161710423300012923Vadose Zone SoilAMQALEGDGPGFRALLEKDAEVMERIGERLDEVFDPWTGLEHTDLAYERLGLGVKAR*
Ga0137419_1035852423300012925Vadose Zone SoilAAMQSMENAGDGFRTLLEKNEDVMNRIGARMDEVFDPWAGLEHTDLAYQRLGLGVPAN*
Ga0137416_1028789013300012927Vadose Zone SoilGFRKLLEKDTDVMSRIGSKLDDVFDPWAGLEHTDLAYERLGLGVKAK*
Ga0120150_101523613300013294PermafrostGSGFRTLLEKDVAVMKRIGGRLDDVFDPWAGLEHTELAYERLGLGVKAR*
Ga0120155_117315313300013768PermafrostPIVQKAAMEAMADDGAGFRTILEANPEVMSRIGTKLDEVFNPWAGLEHTDLAYEKLGLGAKTT*
Ga0120155_117733513300013768PermafrostGPGFRATLEKDKDVMSRIGRRIDEVFDPWKGLEHTELAYERLGLGRTLRT*
Ga0120123_104960523300013770PermafrostLVVQRSAMQAMAEDGTGFRSILEKDKEVMSRIGDRMEEVFDPWMGLEHTDLAYERLALGVKAK*
Ga0120109_116373413300014052PermafrostLSVLEKDNEVMSRIGTRMLEIFDPWTGLEHTDLAYDRLGLGSEALKK*
Ga0120125_119062623300014056PermafrostVQRHAMQAMGEDGPGFRSALEKDNEVMSRIGPQMEGLFDPWAGLEHTDLAYDRLGLGSEARKK*
Ga0167655_104580113300015086Glacier Forefield SoilAMAEDGSGFRSALEKDNDVMSRIGARMEELFDPWAGLEHTDLAYDRLGLGTEARKS*
Ga0137418_1011166953300015241Vadose Zone SoilAMENSSDGFRALLEKNEDVTKRIGPRLDEVFDPWAGLEHTDLAYQRLGLGVPAN*
Ga0134085_1008197033300015359Grasslands SoilDPGAGFRALLEKNEDVMKRIGSKMDQVFDPWAGLEHTDLAYERLGLAVTTK*
Ga0066669_1236315413300018482Grasslands SoilGGRGFRALLQDNQDVMQRLGNRMEEVFDPWSGLEHTDLAYEKLGLGVSAS
Ga0193756_104790823300019866SoilVQQAAMRAMDGDGKGFRALLEENQEVMSRIGSKVKEVFDPWAGLEHTDLAYESLGLGVKA
Ga0193730_102339723300020002SoilMAEDGAGFRAMLEKDKDVMTRIGTRMDVIFDPWAGLEHTDLAYERLGLGRTLRT
Ga0215015_1100629323300021046SoilAVDGDGPGFRDLLAMDADVMRRIGAHLDEVFDPWAGLEHTDLAYERLGLGVKTS
Ga0210384_1008826913300021432SoilGQENSEETGFRKLLEKDTEVMSRIGPKLEEAFNPWAGLEHTDLAYERLGLGVKTK
Ga0208848_105579123300025509Arctic Peat SoilALEKDNEVMSRIGTRMEELFDPWAGLEHTDLAYDRLGLGTEARTS
Ga0207699_1113569113300025906Corn, Switchgrass And Miscanthus RhizosphereGFRELLEKDEEVARLIGRTMDQVFDPWAGLEHTDLAYERLGLGVTAN
Ga0207646_1098320723300025922Corn, Switchgrass And Miscanthus RhizosphereAGFRALLEKNEDVMKRIGSKLDHVFDPWAGLEHTDLAYERLGLGVTSK
Ga0207687_1045465313300025927Miscanthus RhizosphereDATAGQGPGFRQTLEANPEVMRRIGGRLDEVFDPWAGLEHTELAYERQGLGVKAI
Ga0209238_113649213300026301Grasslands SoilKAAMRSMENAGEGFRTLLEKDEDVMKRIGGRMDEIFDPWAGLEHTDLAYQRLGLGVTTK
Ga0209473_107928143300026330SoilLLEKNDEVMRRIGSKLEAVFDPWAGLEHTDLAYERLGLGVPTK
Ga0209158_106632543300026333SoilLLEKNEDVTKRIGARMDQVFDPWAGLEHTDLAYERLGLGVTTK
Ga0209806_114603423300026529SoilEGGPGFRPQIEKNRAVMERIGARLDEVFDPWAGLEHTDLAYQRLGLGVPAN
Ga0209160_105882553300026532SoilAAMQAMEGGTGFRALLQQNDEVMKRIGPKMDAVFDPWAGLEHTDLAYERLGLGVTTK
Ga0209376_115641513300026540SoilAAMRTMENAGDGFRELLEKNEDVTKRIGARMDQVFDPWAGLEHTDLAYERLGLGVTTK
Ga0209588_104716113300027671Vadose Zone SoilPGFRELLEMDAGVMKRIGPHLEEVFDPWAGLEHTDLAYERLRLGVKTS
Ga0209011_116615723300027678Forest SoilATGQTQVGFRELLEQDQQVMSRIGQKLDAVFDPWVGLEHTEIAYDRLGLGAKAH
Ga0209689_118746513300027748SoilKAAMQAMDDDGLGFRAQLENDAEVMKRIGGQLDAVFDPWAGLEHTDLAYERLQLGVKAR
Ga0209689_125400823300027748SoilAAMEAMQESGAGFRTLLEKNDEVMRRIGSKLEAVFDPWAGLEHTDLAYERLGLGVPTK
Ga0209166_1009717713300027857Surface SoilFRAQLEKNKDVMSRIGGALDAVFDPWVGLEHTDLAYERLGLGVKAV
Ga0209701_1015903513300027862Vadose Zone SoilEGPGFRALLEDDAEVMKRIGARLDEIFDPWAGLEHTNLAFDRLGLGAKAR
Ga0209168_1064378023300027986Surface SoilTDGTGYGFRELLEKNDEVRKRIGERLAGLFDPWNGLEHTDLAYERLGLGVSANN
Ga0307282_1040077613300028784SoilLIVQKAAMQGMDEQGAGFRAILEQDKEVMSRIGSRLDEVFDPWVGLEHTDLAFQRLGLGVKAQ
Ga0307468_10169011713300031740Hardwood Forest SoilRPGFRALLEKDKEVMNRIGTRLEEIFDPWTGLEHTELAYERLGLGAKAK
Ga0318546_1126596513300031771SoilQKAAMNAMETGGPGFRSLLEKDAEVVRRIGPKMDSVFDPWQGLEHTELAYERLGLGVTAK


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