Basic Information | |
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Family ID | F104070 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 55 residues |
Representative Sequence | AALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Number of Associated Samples | 84 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 40.91 % |
% of genes near scaffold ends (potentially truncated) | 15.84 % |
% of genes from short scaffolds (< 2000 bps) | 13.86 % |
Associated GOLD sequencing projects | 83 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (96.040 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (22.772 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.554 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (84.158 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 64.29% β-sheet: 0.00% Coil/Unstructured: 35.71% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Marine Deep Ocean Marine Sediment Marine Aqueous Seawater Freshwater To Marine Saline Gradient Marine Marine Seawater Estuarine Salt Marsh Natural And Restored Wetlands Marine Marine Estuarine Water Pelagic Marine Seawater Saline Lake Saline Water Pond Water Water Saline Water And Sediment Saline Water And Sediment |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI11705J14877_100627103 | 3300001419 | Saline Water And Sediment | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALXTTNIVLATITFIGLIYTYTH* |
Ga0065861_11615832 | 3300004448 | Marine | MIGAALNSLNIYPLGPIMNLFGGLTWLVVSIMWKEAALINTNIVLFTITFIGLAYTYIH* |
Ga0069002_102114311 | 3300005214 | Natural And Restored Wetlands | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH* |
Ga0074648_11753151 | 3300005512 | Saline Water And Sediment | IYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLVYTYIH* |
Ga0075109_12483033 | 3300005912 | Saline Lake | ALNSLNIYPYGPLMNLAGGGVWLIVALMWREAALITTNIVLFGVTVIGLVYTFYF* |
Ga0075466_10366053 | 3300006029 | Aqueous | ATGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH* |
Ga0075495_13511043 | 3300006399 | Aqueous | MDSYLKWIATGFLMICAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLI |
Ga0075503_10164681 | 3300006400 | Aqueous | PWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0075503_11490463 | 3300006400 | Aqueous | GAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYIH* |
Ga0075506_10435503 | 3300006401 | Aqueous | SLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0075514_11375011 | 3300006403 | Aqueous | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0075515_101387681 | 3300006404 | Aqueous | FLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0075486_10830911 | 3300006425 | Aqueous | AALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0075486_10860713 | 3300006425 | Aqueous | AALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH* |
Ga0075461_100842534 | 3300006637 | Aqueous | GFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0070749_101337901 | 3300006802 | Aqueous | ALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0070754_105036713 | 3300006810 | Aqueous | IYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH* |
Ga0070750_1000843310 | 3300006916 | Aqueous | NSLNIYPWGPIANLFGGGTWLIVSIMWREAALITTNIVLAGITMAGLLYTYIH* |
Ga0099847_11933193 | 3300007540 | Aqueous | LNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0102852_11065312 | 3300007718 | Estuarine | SLNIYPIGPIATLVGGVCWLAVSIMWREAALITTNLVLSTITLVGLVYTYIQ* |
Ga0075480_100268001 | 3300008012 | Aqueous | LNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLASITIIGLIYTYTH* |
Ga0102930_11161693 | 3300008963 | Pond Water | AALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTHLH* |
Ga0102963_11427541 | 3300009001 | Pond Water | LNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH* |
Ga0102963_13301323 | 3300009001 | Pond Water | IYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH* |
Ga0114995_100817034 | 3300009172 | Marine | VGIYPLGPITTLIGGFCWLAVAIMWKEAALITTNLVLSAITVIGLIYTYTN* |
Ga0114997_101917041 | 3300009425 | Marine | YPIGPIATLVGGLCWLTVSIMWREAALITTNLVLSTITLVGLVYTYTL* |
Ga0114915_10412163 | 3300009428 | Deep Ocean | CNSLNIYPIGPIATLVGGVCWLAVSIMWREAALITTNLVLSAITLVGLVYTYIL* |
Ga0115561_10218351 | 3300009440 | Pelagic Marine | TGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH* |
Ga0136655_10147881 | 3300010316 | Freshwater To Marine Saline Gradient | IYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYSYTH* |
Ga0136655_11498393 | 3300010316 | Freshwater To Marine Saline Gradient | LNSLNIYPYGPIVNLLGGFTWLIVSIMWKEAALITTNVVLATVTIIGLVYTYIH* |
Ga0151675_10225891 | 3300011254 | Marine | LAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYIH* |
Ga0129326_13371743 | 3300012522 | Aqueous | GFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH* |
Ga0129331_10663993 | 3300012524 | Aqueous | ANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH* |
Ga0182047_12688121 | 3300016737 | Salt Marsh | NSLAIYPAGPLLTLTGGLCWLVVSIMWREAALITTNVVLSAITIIGLLYTNIH |
Ga0182082_12563291 | 3300016771 | Salt Marsh | GFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0181412_11515493 | 3300017714 | Seawater | YPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIVGLVYTYTH |
Ga0181415_10448451 | 3300017732 | Seawater | MVGVGANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNIVLATITLAGLLYTYIH |
Ga0181427_10408215 | 3300017745 | Seawater | MMGAACNSLAIYPAGPLLTLTGGLCWLVVSIMWREAALITTNVVLSAITIIGLLY |
Ga0181410_11791822 | 3300017763 | Seawater | NSLNIYPIGPIATLVGGLCWLTVSIMWREAALITTNLVLSTITLVGLVYTYTL |
Ga0181410_11965773 | 3300017763 | Seawater | IYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH |
Ga0181406_10411571 | 3300017767 | Seawater | ANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIVGLVYTYIH |
Ga0181406_12192763 | 3300017767 | Seawater | NSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH |
Ga0187221_12070383 | 3300017769 | Seawater | GAALNSLNIYPWGPIANLFGGGTWLIVSIMWREAALITTNIVLATITLVGLLYTYIH |
Ga0181423_11169594 | 3300017781 | Seawater | TIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIVGLVYTYTH |
Ga0181424_100404694 | 3300017786 | Seawater | AALNSLNIYPWGPIANLFGGGTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0181552_101025511 | 3300017824 | Salt Marsh | NSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0181607_101091131 | 3300017950 | Salt Marsh | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0181583_101252631 | 3300017952 | Salt Marsh | WIATGLLIIGAALNSLNIYPYGPLMNLLGGFVWLAVSVMWKEAALITTNVVLASVTIIGLVYTYFF |
Ga0181585_102387615 | 3300017969 | Salt Marsh | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGL |
Ga0181601_105337953 | 3300018041 | Salt Marsh | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYT |
Ga0181559_104116994 | 3300018415 | Salt Marsh | IGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0181594_101319324 | 3300020054 | Salt Marsh | IYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0181575_100792375 | 3300020055 | Salt Marsh | LLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0181603_101504164 | 3300020174 | Salt Marsh | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYT |
Ga0181599_13470783 | 3300020178 | Salt Marsh | LNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0181605_102909623 | 3300020188 | Salt Marsh | LMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0211504_10085374 | 3300020347 | Marine | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0211521_104863402 | 3300020428 | Marine | MIGVGANSLAIYPLGPLATLAGGLCWLAVSIMWKEAALITTNIVLSTITIVGL |
Ga0181598_13317513 | 3300020810 | Salt Marsh | TGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0213867_11163991 | 3300021335 | Seawater | AALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0213867_12285553 | 3300021335 | Seawater | LNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0213862_103653951 | 3300021347 | Seawater | LAIYPAGPLLTLTGGLCWLVVSIMWREAALITTNVVLSAITIIGLLYTNIH |
Ga0213858_100123311 | 3300021356 | Seawater | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLIYTYI |
Ga0213858_100656345 | 3300021356 | Seawater | IYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYIH |
Ga0213859_104584643 | 3300021364 | Seawater | LNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTHLH |
Ga0213861_102299984 | 3300021378 | Seawater | TGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0213866_100552976 | 3300021425 | Seawater | IGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0222717_105524902 | 3300021957 | Estuarine Water | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLVYTYIH |
Ga0222718_1000652416 | 3300021958 | Estuarine Water | NSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0222718_101425064 | 3300021958 | Estuarine Water | MIGAALNSLNIYPWGPIMNLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0222716_102694174 | 3300021959 | Estuarine Water | YPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0222716_105076243 | 3300021959 | Estuarine Water | ALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0222715_101723351 | 3300021960 | Estuarine Water | LNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFVGLIYTYTH |
Ga0222714_104951183 | 3300021961 | Estuarine Water | AALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0222713_101099354 | 3300021962 | Estuarine Water | ATGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0222719_100016821 | 3300021964 | Estuarine Water | GAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0222719_102330992 | 3300021964 | Estuarine Water | IIGAALNSLNIYPYGPLVNLLGGLVWLSVSIMWKEAALITTNIVLASVTIIGLVYTYF |
Ga0222719_104243454 | 3300021964 | Estuarine Water | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLI |
Ga0222719_104264471 | 3300021964 | Estuarine Water | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLVYTYTH |
Ga0222719_104995193 | 3300021964 | Estuarine Water | IIGAALNSLNIYPYGPLVNLLGGLVWLSVSIMWKEAALITTNVVLASVTIIGLVYTYF |
Ga0222719_106428863 | 3300021964 | Estuarine Water | ATGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLVYTYTH |
Ga0222719_107958593 | 3300021964 | Estuarine Water | GFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0196905_10621321 | 3300022198 | Aqueous | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYT |
Ga0196905_11625801 | 3300022198 | Aqueous | FLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYT |
Ga0222668_10044063 | 3300022865 | Saline Water | LIIGAALNSLNIYPYGPLMNLAGGGVWLIVALMWREAALITTNIVLFGVTVIGLVYTFYF |
Ga0222703_10858403 | 3300023256 | Saline Water | YGPLMNLAGGGVWLIVALMWREAALITTNIVLFGVTVIGLVYTFYF |
Ga0255763_10618841 | 3300023273 | Salt Marsh | PWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
Ga0209645_11525193 | 3300025151 | Marine | LAIYPAGPLFTLAGGLTWLIVSIMWKEAALITTNLVLSAITIIGLVYTYVY |
Ga0208019_10434271 | 3300025687 | Aqueous | YPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0209771_12184881 | 3300025701 | Marine | NIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0208899_11120644 | 3300025759 | Aqueous | LNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0208767_12334881 | 3300025769 | Aqueous | LNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0208543_11266701 | 3300025810 | Aqueous | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTY |
Ga0209962_10019497 | 3300026125 | Water | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTHLH |
Ga0209961_10254841 | 3300026130 | Water | FLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYT |
Ga0209951_10614543 | 3300026138 | Pond Water | MIGAALNSLNIYPWGPIMNLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTHL |
Ga0209536_1003496545 | 3300027917 | Marine Sediment | IYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH |
Ga0308019_102605571 | 3300031598 | Marine | SLNIYPIGPIATLVGGVCWLAVSIMWREAALITTNLVLSTITLVGLVYTYIL |
Ga0307984_10675331 | 3300031658 | Marine | IYPWGPIANMFGGMTWLIVSIMWREAALITTNIVLSTITLIGLVYTYIN |
Ga0308000_100265864 | 3300031848 | Marine | MVGAALNSLNIYPWGPIANMFGGMTWLIVSIMWREAALITTNIVLSTITLIGLVYTYIN |
Ga0315321_107655663 | 3300032088 | Seawater | YPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH |
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