NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104070

Metagenome / Metatranscriptome Family F104070

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104070
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 55 residues
Representative Sequence AALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Number of Associated Samples 84
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 40.91 %
% of genes near scaffold ends (potentially truncated) 15.84 %
% of genes from short scaffolds (< 2000 bps) 13.86 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.040 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(22.772 % of family members)
Environment Ontology (ENVO) Unclassified
(44.554 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(84.158 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72
1JGI11705J14877_100627103
2Ga0065861_11615832
3Ga0069002_102114311
4Ga0074648_11753151
5Ga0075109_12483033
6Ga0075466_10366053
7Ga0075495_13511043
8Ga0075503_10164681
9Ga0075503_11490463
10Ga0075506_10435503
11Ga0075514_11375011
12Ga0075515_101387681
13Ga0075486_10830911
14Ga0075486_10860713
15Ga0075461_100842534
16Ga0070749_101337901
17Ga0070754_105036713
18Ga0070750_1000843310
19Ga0099847_11933193
20Ga0102852_11065312
21Ga0075480_100268001
22Ga0102930_11161693
23Ga0102963_11427541
24Ga0102963_13301323
25Ga0114995_100817034
26Ga0114997_101917041
27Ga0114915_10412163
28Ga0115561_10218351
29Ga0136655_10147881
30Ga0136655_11498393
31Ga0151675_10225891
32Ga0129326_13371743
33Ga0129331_10663993
34Ga0182047_12688121
35Ga0182082_12563291
36Ga0181412_11515493
37Ga0181415_10448451
38Ga0181427_10408215
39Ga0181410_11791822
40Ga0181410_11965773
41Ga0181406_10411571
42Ga0181406_12192763
43Ga0187221_12070383
44Ga0181423_11169594
45Ga0181424_100404694
46Ga0181552_101025511
47Ga0181607_101091131
48Ga0181583_101252631
49Ga0181585_102387615
50Ga0181601_105337953
51Ga0181559_104116994
52Ga0181594_101319324
53Ga0181575_100792375
54Ga0181603_101504164
55Ga0181599_13470783
56Ga0181605_102909623
57Ga0211504_10085374
58Ga0211521_104863402
59Ga0181598_13317513
60Ga0213867_11163991
61Ga0213867_12285553
62Ga0213862_103653951
63Ga0213858_100123311
64Ga0213858_100656345
65Ga0213859_104584643
66Ga0213861_102299984
67Ga0213866_100552976
68Ga0222717_105524902
69Ga0222718_1000652416
70Ga0222718_101425064
71Ga0222716_102694174
72Ga0222716_105076243
73Ga0222715_101723351
74Ga0222714_104951183
75Ga0222713_101099354
76Ga0222719_100016821
77Ga0222719_102330992
78Ga0222719_104243454
79Ga0222719_104264471
80Ga0222719_104995193
81Ga0222719_106428863
82Ga0222719_107958593
83Ga0196905_10621321
84Ga0196905_11625801
85Ga0222668_10044063
86Ga0222703_10858403
87Ga0255763_10618841
88Ga0209645_11525193
89Ga0208019_10434271
90Ga0209771_12184881
91Ga0208899_11120644
92Ga0208767_12334881
93Ga0208543_11266701
94Ga0209962_10019497
95Ga0209961_10254841
96Ga0209951_10614543
97Ga0209536_1003496545
98Ga0308019_102605571
99Ga0307984_10675331
100Ga0308000_100265864
101Ga0315321_107655663
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 64.29%    β-sheet: 0.00%    Coil/Unstructured: 35.71%
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Variant

510152025303540455055AALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTHExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
4.0%96.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Marine
Deep Ocean
Marine Sediment
Marine
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Marine
Marine
Seawater
Estuarine
Salt Marsh
Natural And Restored Wetlands
Marine
Marine
Estuarine Water
Pelagic Marine
Seawater
Saline Lake
Saline Water
Pond Water
Water
Saline Water And Sediment
Saline Water And Sediment
3.0%22.8%7.9%14.9%3.0%14.9%9.9%4.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI11705J14877_1006271033300001419Saline Water And SedimentMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALXTTNIVLATITFIGLIYTYTH*
Ga0065861_116158323300004448MarineMIGAALNSLNIYPLGPIMNLFGGLTWLVVSIMWKEAALINTNIVLFTITFIGLAYTYIH*
Ga0069002_1021143113300005214Natural And Restored WetlandsMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH*
Ga0074648_117531513300005512Saline Water And SedimentIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLVYTYIH*
Ga0075109_124830333300005912Saline LakeALNSLNIYPYGPLMNLAGGGVWLIVALMWREAALITTNIVLFGVTVIGLVYTFYF*
Ga0075466_103660533300006029AqueousATGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH*
Ga0075495_135110433300006399AqueousMDSYLKWIATGFLMICAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLI
Ga0075503_101646813300006400AqueousPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0075503_114904633300006400AqueousGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYIH*
Ga0075506_104355033300006401AqueousSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0075514_113750113300006403AqueousMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0075515_1013876813300006404AqueousFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0075486_108309113300006425AqueousAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0075486_108607133300006425AqueousAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH*
Ga0075461_1008425343300006637AqueousGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0070749_1013379013300006802AqueousALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0070754_1050367133300006810AqueousIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH*
Ga0070750_10008433103300006916AqueousNSLNIYPWGPIANLFGGGTWLIVSIMWREAALITTNIVLAGITMAGLLYTYIH*
Ga0099847_119331933300007540AqueousLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0102852_110653123300007718EstuarineSLNIYPIGPIATLVGGVCWLAVSIMWREAALITTNLVLSTITLVGLVYTYIQ*
Ga0075480_1002680013300008012AqueousLNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLASITIIGLIYTYTH*
Ga0102930_111616933300008963Pond WaterAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTHLH*
Ga0102963_114275413300009001Pond WaterLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH*
Ga0102963_133013233300009001Pond WaterIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH*
Ga0114995_1008170343300009172MarineVGIYPLGPITTLIGGFCWLAVAIMWKEAALITTNLVLSAITVIGLIYTYTN*
Ga0114997_1019170413300009425MarineYPIGPIATLVGGLCWLTVSIMWREAALITTNLVLSTITLVGLVYTYTL*
Ga0114915_104121633300009428Deep OceanCNSLNIYPIGPIATLVGGVCWLAVSIMWREAALITTNLVLSAITLVGLVYTYIL*
Ga0115561_102183513300009440Pelagic MarineTGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH*
Ga0136655_101478813300010316Freshwater To Marine Saline GradientIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYSYTH*
Ga0136655_114983933300010316Freshwater To Marine Saline GradientLNSLNIYPYGPIVNLLGGFTWLIVSIMWKEAALITTNVVLATVTIIGLVYTYIH*
Ga0151675_102258913300011254MarineLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYIH*
Ga0129326_133717433300012522AqueousGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH*
Ga0129331_106639933300012524AqueousANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH*
Ga0182047_126881213300016737Salt MarshNSLAIYPAGPLLTLTGGLCWLVVSIMWREAALITTNVVLSAITIIGLLYTNIH
Ga0182082_125632913300016771Salt MarshGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0181412_115154933300017714SeawaterYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIVGLVYTYTH
Ga0181415_104484513300017732SeawaterMVGVGANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNIVLATITLAGLLYTYIH
Ga0181427_104082153300017745SeawaterMMGAACNSLAIYPAGPLLTLTGGLCWLVVSIMWREAALITTNVVLSAITIIGLLY
Ga0181410_117918223300017763SeawaterNSLNIYPIGPIATLVGGLCWLTVSIMWREAALITTNLVLSTITLVGLVYTYTL
Ga0181410_119657733300017763SeawaterIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH
Ga0181406_104115713300017767SeawaterANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIVGLVYTYIH
Ga0181406_121927633300017767SeawaterNSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH
Ga0187221_120703833300017769SeawaterGAALNSLNIYPWGPIANLFGGGTWLIVSIMWREAALITTNIVLATITLVGLLYTYIH
Ga0181423_111695943300017781SeawaterTIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIVGLVYTYTH
Ga0181424_1004046943300017786SeawaterAALNSLNIYPWGPIANLFGGGTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0181552_1010255113300017824Salt MarshNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0181607_1010911313300017950Salt MarshMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0181583_1012526313300017952Salt MarshWIATGLLIIGAALNSLNIYPYGPLMNLLGGFVWLAVSVMWKEAALITTNVVLASVTIIGLVYTYFF
Ga0181585_1023876153300017969Salt MarshMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGL
Ga0181601_1053379533300018041Salt MarshMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYT
Ga0181559_1041169943300018415Salt MarshIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0181594_1013193243300020054Salt MarshIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0181575_1007923753300020055Salt MarshLLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0181603_1015041643300020174Salt MarshMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYT
Ga0181599_134707833300020178Salt MarshLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0181605_1029096233300020188Salt MarshLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0211504_100853743300020347MarineMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0211521_1048634023300020428MarineMIGVGANSLAIYPLGPLATLAGGLCWLAVSIMWKEAALITTNIVLSTITIVGL
Ga0181598_133175133300020810Salt MarshTGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0213867_111639913300021335SeawaterAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0213867_122855533300021335SeawaterLNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0213862_1036539513300021347SeawaterLAIYPAGPLLTLTGGLCWLVVSIMWREAALITTNVVLSAITIIGLLYTNIH
Ga0213858_1001233113300021356SeawaterMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLIYTYI
Ga0213858_1006563453300021356SeawaterIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYIH
Ga0213859_1045846433300021364SeawaterLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTHLH
Ga0213861_1022999843300021378SeawaterTGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0213866_1005529763300021425SeawaterIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0222717_1055249023300021957Estuarine WaterMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLVYTYIH
Ga0222718_10006524163300021958Estuarine WaterNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0222718_1014250643300021958Estuarine WaterMIGAALNSLNIYPWGPIMNLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0222716_1026941743300021959Estuarine WaterYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0222716_1050762433300021959Estuarine WaterALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0222715_1017233513300021960Estuarine WaterLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFVGLIYTYTH
Ga0222714_1049511833300021961Estuarine WaterAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0222713_1010993543300021962Estuarine WaterATGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0222719_1000168213300021964Estuarine WaterGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0222719_1023309923300021964Estuarine WaterIIGAALNSLNIYPYGPLVNLLGGLVWLSVSIMWKEAALITTNIVLASVTIIGLVYTYF
Ga0222719_1042434543300021964Estuarine WaterMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLI
Ga0222719_1042644713300021964Estuarine WaterMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLVYTYTH
Ga0222719_1049951933300021964Estuarine WaterIIGAALNSLNIYPYGPLVNLLGGLVWLSVSIMWKEAALITTNVVLASVTIIGLVYTYF
Ga0222719_1064288633300021964Estuarine WaterATGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITLIGLVYTYTH
Ga0222719_1079585933300021964Estuarine WaterGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0196905_106213213300022198AqueousMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYT
Ga0196905_116258013300022198AqueousFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYT
Ga0222668_100440633300022865Saline WaterLIIGAALNSLNIYPYGPLMNLAGGGVWLIVALMWREAALITTNIVLFGVTVIGLVYTFYF
Ga0222703_108584033300023256Saline WaterYGPLMNLAGGGVWLIVALMWREAALITTNIVLFGVTVIGLVYTFYF
Ga0255763_106188413300023273Salt MarshPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0209645_115251933300025151MarineLAIYPAGPLFTLAGGLTWLIVSIMWKEAALITTNLVLSAITIIGLVYTYVY
Ga0208019_104342713300025687AqueousYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0209771_121848813300025701MarineNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0208899_111206443300025759AqueousLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0208767_123348813300025769AqueousLNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0208543_112667013300025810AqueousMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTY
Ga0209962_100194973300026125WaterMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTHLH
Ga0209961_102548413300026130WaterFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYT
Ga0209951_106145433300026138Pond WaterMIGAALNSLNIYPWGPIMNLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTHL
Ga0209536_10034965453300027917Marine SedimentIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLVYTYTH
Ga0308019_1026055713300031598MarineSLNIYPIGPIATLVGGVCWLAVSIMWREAALITTNLVLSTITLVGLVYTYIL
Ga0307984_106753313300031658MarineIYPWGPIANMFGGMTWLIVSIMWREAALITTNIVLSTITLIGLVYTYIN
Ga0308000_1002658643300031848MarineMVGAALNSLNIYPWGPIANMFGGMTWLIVSIMWREAALITTNIVLSTITLIGLVYTYIN
Ga0315321_1076556633300032088SeawaterYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH


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