NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F104068

Metagenome Family F104068

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104068
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 78 residues
Representative Sequence VIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDETR
Number of Associated Samples 82
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 77.78 %
% of genes near scaffold ends (potentially truncated) 35.64 %
% of genes from short scaffolds (< 2000 bps) 29.70 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (89.109 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(28.713 % of family members)
Environment Ontology (ENVO) Unclassified
(41.584 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(51.485 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.75%    β-sheet: 15.00%    Coil/Unstructured: 61.25%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF14216DUF4326 1.98
PF08291Peptidase_M15_3 0.99
PF00145DNA_methylase 0.99
PF13392HNH_3 0.99
PF01844HNH 0.99
PF06378DUF1071 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.99


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A89.11 %
All OrganismsrootAll Organisms10.89 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10064104All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1528Open in IMG/M
3300005581|Ga0049081_10029354Not Available2088Open in IMG/M
3300006637|Ga0075461_10254370Not Available515Open in IMG/M
3300006810|Ga0070754_10319708Not Available692Open in IMG/M
3300006867|Ga0075476_10101768All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1104Open in IMG/M
3300006874|Ga0075475_10466753Not Available501Open in IMG/M
3300007214|Ga0103959_1095078All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1931Open in IMG/M
3300007538|Ga0099851_1037325All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1932Open in IMG/M
3300007539|Ga0099849_1063549All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage KBS-S-2A1517Open in IMG/M
3300007539|Ga0099849_1109122Not Available1097Open in IMG/M
3300007541|Ga0099848_1127981Not Available955Open in IMG/M
3300007542|Ga0099846_1109598Not Available1012Open in IMG/M
3300009001|Ga0102963_1063388Not Available1522Open in IMG/M
3300010354|Ga0129333_10305106Not Available1424Open in IMG/M
3300010354|Ga0129333_10353729Not Available1306Open in IMG/M
3300010354|Ga0129333_10564659Not Available991Open in IMG/M
3300012017|Ga0153801_1017842All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1266Open in IMG/M
3300013010|Ga0129327_10925230Not Available502Open in IMG/M
3300013372|Ga0177922_11134356Not Available1561Open in IMG/M
3300017951|Ga0181577_10030898All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3878Open in IMG/M
3300017967|Ga0181590_10166092Not Available1679Open in IMG/M
3300020084|Ga0194110_10112714All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2218Open in IMG/M
3300021092|Ga0194122_10140867Not Available1302Open in IMG/M
3300021376|Ga0194130_10294675Not Available904Open in IMG/M
3300021960|Ga0222715_10565883Not Available592Open in IMG/M
3300021964|Ga0222719_10826847Not Available506Open in IMG/M
3300025646|Ga0208161_1003328Not Available7818Open in IMG/M
3300025646|Ga0208161_1043068Not Available1499Open in IMG/M
3300025674|Ga0208162_1064704Not Available1176Open in IMG/M
3300031669|Ga0307375_10213070Not Available1288Open in IMG/M
3300031857|Ga0315909_10280665Not Available1258Open in IMG/M
3300031963|Ga0315901_10895724Not Available632Open in IMG/M
3300033981|Ga0334982_0067281All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1944Open in IMG/M
3300034092|Ga0335010_0071325All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2406Open in IMG/M
3300034101|Ga0335027_0132614All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1853Open in IMG/M
3300034112|Ga0335066_0071501Not Available2252Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous28.71%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake17.82%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater9.90%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient9.90%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh6.93%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand3.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.97%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.97%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment2.97%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment2.97%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.98%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment1.98%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.99%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water0.99%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.99%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.99%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.99%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.99%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.99%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001419Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)EnvironmentalOpen in IMG/M
3300001748Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)EnvironmentalOpen in IMG/M
3300004951Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVsEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300005955Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14EnvironmentalOpen in IMG/M
3300006005Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_25-Nov-14EnvironmentalOpen in IMG/M
3300006014Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T3_25-Nov-14EnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007214Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projectsEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300013087Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30LEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017968Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017971Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaGEnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020083Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300mEnvironmentalOpen in IMG/M
3300020084Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200mEnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020190Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surfaceEnvironmentalOpen in IMG/M
3300020197Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65mEnvironmentalOpen in IMG/M
3300020204Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surfaceEnvironmentalOpen in IMG/M
3300020220Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100mEnvironmentalOpen in IMG/M
3300020221Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100mEnvironmentalOpen in IMG/M
3300020578Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35mEnvironmentalOpen in IMG/M
3300021091Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40mEnvironmentalOpen in IMG/M
3300021092Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10mEnvironmentalOpen in IMG/M
3300021376Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surfaceEnvironmentalOpen in IMG/M
3300021424Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surfaceEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022149Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022925Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaGEnvironmentalOpen in IMG/M
3300023119Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027224Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027940Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T3_25-Nov-14 (SPAdes)EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034103Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119EnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1006410453300000116MarineVKLVTITESTDGRVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKQKIIAEGGDPDETR
JGI11705J14877_1009311313300001419Saline Water And SedimentLSFKVGWCDCTCGVPLAALPLIQRNPVGQPRYYWNEQRPNLRYSSVTSILSATQSDSTRYALKRWKQKIIAEGGDPEETRQDAARRGSKIH
JGI11772J19994_100515413300001748Saline Water And SedimentMQRNPAGQARYYFNEDKPHIKYSSVTSILSATQSDSTRYALKRWKAKILAEGGDPEETRNEAAR
JGI11772J19994_104769223300001748Saline Water And SedimentMNICACPVPLQPLPLIQRNPAGQARYYFNEDKPHIKYSSVTSILSATQSESTRYALKRWKAKILAEGGDPEETRNEAARR
Ga0068513_104028723300004951Marine WaterMQRNPAGQARYYFNEDKPHIKYSSVTSILSATQSDSTRYALKRWKAKILAEGGDPEETRN
Ga0074648_121078313300005512Saline Water And SedimentMNICACPVPLQPLPLIQRNPAGQARYYFNEDKPHIKYSSVTSILSATQSESTRYALKRWKAKILAEGGDPEETRNEAAR
Ga0049081_1002935453300005581Freshwater LenticVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDETR
Ga0074649_105060843300005613Saline Water And SedimentVPLAALPLIQRNPVGQPRYYWNEQRPNLRYSSVTSILSATQSDSTRYALKRWKQKIIAEGGDP
Ga0073922_105342813300005955SandVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDETRDQAAKRGSQIHDW
Ga0073910_100133153300006005SandVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRW
Ga0073919_102721913300006014SandVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSE
Ga0075461_1025437013300006637AqueousVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHD
Ga0070754_1007371753300006810AqueousVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDP
Ga0070754_1031970833300006810AqueousVKLVTITESTDGRVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDE
Ga0075476_1010176813300006867AqueousVRLVTITESNGVAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYSSITSILSATQSENTKYALRRWKQKIISEGGDPDETRDQA
Ga0075481_1009827233300006868AqueousVRLVTITESNGDQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYSSITSILSATQSENTKHALRRWKQKIISEGGDPDETRDQAAKRGSQIHDWFEAFLHHNA
Ga0075475_1046675323300006874AqueousVKLVTITESNGYGMPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIH
Ga0070750_1009720313300006916AqueousMVRLLLRVPLAALPLLQRNPVGQPRYYWNEQRPNLRYSSVTSILSATQSDHTRYALKRWKQKIISEGGDPEETRQDAAR
Ga0070750_1044803513300006916AqueousMSICACSVPLQPLPLIQRNPAGQARYYFNEQKPDLKYSSVTSILSATQSDATRYALRRWKAKIIAEGGDPEETRNEAARRGSRIHDWFEQFLQGQD
Ga0103959_109507813300007214Freshwater LakeMPLQRLPLIQRNPVGQPRYYWNEQRPELRYSSITSILSATQSEATKMALRRWKAKIIAEGGD
Ga0075460_1010495013300007234AqueousVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHDWFEA
Ga0099851_103732513300007538AqueousMLVTITESNCKQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKAKIISEGGDPDETRDQAARRGSLIHDWFEAFL
Ga0099851_114401833300007538AqueousVILVTIDTNSDDFVPLQRLPLIQRNPVGQPRYYWNEARPDLRYASITSILSATQSEATKQALRRWKAKILAEGGDPDETRDQAAK
Ga0099849_106354943300007539AqueousVRLVTITESNGDQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYSSITSILSATQSENTKYALRRWKQKIISEGGDPDETRDQAAKRGSQIHDWFEAFL
Ga0099849_110912243300007539AqueousVKIVTITESNGYAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQ
Ga0099849_117690133300007539AqueousVRLVTIEESNGHLMPLQRLPLIQRNPVGQPRYYWNEARPDLKYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDETRDQAARR
Ga0099848_112798133300007541AqueousMLVTITESNCEQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKAKIIS
Ga0099846_105979713300007542AqueousVKLVTITESTDGRVPLQRLPLIQRNPVGQPRYYWNEARPELKYTSITSILSATQSENTKHALRRWKAKIIAEGGDPD
Ga0099846_110959813300007542AqueousMLVTITESNCKQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKAKIISEGGDPDETRDQAARRGSLIHDWFEAFLHHNAP
Ga0099850_107217343300007960AqueousVILVTIDTNRADLVPLPRLPLIQRNPVGQPRYYWNEERPDLRYASITSILSATQSEATRQALRRWKA
Ga0102963_106338853300009001Pond WaterVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHDWFELFLHHKAP
Ga0129345_130952223300010297Freshwater To Marine Saline GradientVPLQPLPLIQRNPAGQARYYFNEQKPDLKYSSVTSILSATQSDATRYALKRWKAKIIAEGGDPEETRNEAARRG
Ga0136656_110526433300010318Freshwater To Marine Saline GradientVILVTIDTNSADFVPLQRLPLIQRNPVGQPRYYWNEARPDLRYASITSILSATQSEATKQALRRWKAKILAEGGDPDETRDQAAKRG
Ga0129333_1030510643300010354Freshwater To Marine Saline GradientVRFVTIPESSSTAVPLQRLPLIQRNPVGQSRYYWNEARPDLRYSSITSILSATQSEATKMALRRWKAKI
Ga0129333_1035372943300010354Freshwater To Marine Saline GradientVRFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMAL
Ga0129333_1056465913300010354Freshwater To Marine Saline GradientVKLVTITESECGFVPLQRLPLIQRNPVGQPRYYWNEARPDLKYSSITSILSATQSEATKMALRRWRAKIISEGGDPDETRDQAARRGSLIHD
Ga0129324_1031310513300010368Freshwater To Marine Saline GradientVPLQPLPLIQRNPAGQARYYFNEQKPDLKYSSVTSILSATQSDATRYALKRWKAKIIAEGGD
Ga0129336_1037664613300010370Freshwater To Marine Saline GradientVTLVTIYQNSADFVPLQRLPLIQRNPVGQPRYYWNEARPDLRYASITSILSATQSEATRQAL
Ga0129336_1046795113300010370Freshwater To Marine Saline GradientVRFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAK
Ga0129336_1068604523300010370Freshwater To Marine Saline GradientLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAE
Ga0153801_101784213300012017FreshwaterVTLVTIPGNSREPVPLQRLPLIQRNPVGQPRYYWNETRPDLRYSSITSILSATQSEATRQALRRWKAKIIAE
Ga0164293_1044289733300013004FreshwaterVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDETRDQAAKRGSQIHDWFEQFLN
Ga0129327_1092523013300013010Freshwater To Marine Saline GradientVKIVTITESNGCAVPLQRLPLIQRNPVGQSRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKQKI
Ga0163212_129098023300013087FreshwaterMRLVNLLHTCSLRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWKAKIVADGGDPDETLQQAAKR
Ga0177922_1113435653300013372FreshwaterVRFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKILAEGGDPDETRDQAAKRGSQIH
Ga0181577_1003089813300017951Salt MarshVKLVTITESTNGRVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHDWFEA
Ga0181590_1016609213300017967Salt MarshVKLVTITESTDGRVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKAKIIAEGGDPDETRDQAARR
Ga0181587_1085136313300017968Salt MarshVRLVTITESNGVAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYSSITSILSATQSENTKYALRRWKQKIISEGGDPDETRDQAAKRGS
Ga0180438_1005460413300017971Hypersaline Lake SedimentVPLQPLPLIQRNPAGQARYYFNENKPQLKYSSVTAILSATQSDATRYALKRWRAKILSEGGDPEETRNEAARRGS
Ga0180434_1140776923300017991Hypersaline Lake SedimentMNICACPVPLQPLPLIQRNPAGQARYYFNEDKPHIKYSSVTSILSATQSESTRYALKKWKAKILAEGGDPEETRNEAARRGS
Ga0180433_1130619623300018080Hypersaline Lake SedimentVPLAALPLIQRNPVGQPRYYWNEQRPNLRYSSVTSILSATQSDSTRYALKRWKQKIIAEGGDPEETRQDAARRGSKIHDWFEAFLLRQNPDIPED
Ga0181591_1052903313300018424Salt MarshVRLVTITESNGVTVPLQRLPLIQRNPVGQPRYYWNEARPDLKYSSITSILSATQSENTKYALRRWKQKIISEGGDPDETRDQAAKRGSQIHDWFE
Ga0181568_1021222413300018428Salt MarshMVRLQNDVPLAALPLIQRNPVGRPRYYWNEQRPNLRYSSVTSILSATQSDHTRYALKRWKQKIIGEGGDPEETRQDAARRGSKIHDWFEAFL
Ga0194113_1061493743300020074Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIAL
Ga0194111_1076508713300020083Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWKAKIVADGGDPDETLQQAAKRGSAIHD
Ga0194110_1011271463300020084Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWKAKIVADGGDP
Ga0194134_1018455343300020179Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQ
Ga0194118_1022439113300020190Freshwater LakeMRLVNLLQTCSLRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWKAKIVADGGDPDETL
Ga0194118_1055433513300020190Freshwater LakeVIFVTIAESSCDPVPLQRLPLIQRNPVGQPRYYWNEARPDLRYSSITSILSATQSEATRQALRRWKAKIIAEGGDPDETRDQAAKRGAAIH
Ga0194128_1026561213300020197Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWK
Ga0194116_1008218663300020204Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALR
Ga0194119_1010848663300020220Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATK
Ga0194127_1027399543300020221Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWKAKIVADGGDPDET
Ga0194129_1011103253300020578Freshwater LakeMRLVNLLQTCSLRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWKAKIVADG
Ga0194129_1012244853300020578Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWKAKIVADG
Ga0194133_1017859843300021091Freshwater LakeMRLVNLLQTCSLRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRRWKAKIVADGGD
Ga0194122_1014086743300021092Freshwater LakeMRLVNLLQTCSLRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSITSILSATQSEATKIALRR
Ga0194130_1013255153300021376Freshwater LakeVKFVTLQETCSFRLPLQRLPLIQRNPVGQPRYYWNEARPDLRYFSVTSILSATQSEATKIALRR
Ga0194130_1029467513300021376Freshwater LakeVIFVTIAESSCDPVPLQRLPLIQRNPVGQPRYYWNEARPDLRYSSITSILSATQSEATRQALRRWKAKIIAEGG
Ga0194117_1009872543300021424Freshwater LakeVIFVTIAESSCDPVPLQRLPLIQRNPVGQPRYYWNEARPDLRYSSITSILSATQSEATRQALRRWKAKIIAEGGDPDETRDQAAKR
Ga0222715_1056588333300021960Estuarine WaterMPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHDW
Ga0222714_1019552013300021961Estuarine WaterVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSL
Ga0222719_1082684723300021964Estuarine WaterVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHDWFEL
Ga0196907_10925613300022149AqueousVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQK
Ga0212031_102581413300022176AqueousMLVTITESNCKQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKAKIISEGGDPDETRDQAARRGSLIHDWFEA
Ga0196905_115889133300022198AqueousVRFVTIPESSSTAVPLQRLPLIQRNPVGQSRYYWNEARPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDET
Ga0255773_1031095723300022925Salt MarshMVRLQNDVPLAALPLIQRNPVGRPRYYWNEQRPNLRYSSVTSILSATQSDHTRYALKRWKQKIIGEGGDPEETRQDAARRGSKIHDWFEAFLL
Ga0255762_1024234013300023119Salt MarshMVRLQNDVPLAALPLIQRNPVGRPRYYWNEQRPNLRYSSVTSILSATQSDHTRYALKRWKQKIISEGG
(restricted) Ga0233412_1051295113300023210SeawaterVPLQPLPLLQRNPKGQARYYFNEAKPHYKYSSVTSILSATQSDATSYALRRWKAKIIAEGGDPDESRNEAARRGTR
Ga0208161_1003328213300025646AqueousMLVTITESNCKQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKA
Ga0208161_104306813300025646AqueousMLVTITESNCEQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKAKIISDGGD
Ga0208160_113825313300025647AqueousVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDET
Ga0208160_115816113300025647AqueousLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDET
Ga0208795_104769943300025655AqueousMLVTITESNCKQVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKYALRRWKAKIISEG
Ga0208162_102011153300025674AqueousVPLQPLPLIQRNPAGQARYYFNENKPHLKYSSVTSILSATQSDATRYALKRWRAKILAEGGDPEETRNEAARR
Ga0208162_106470413300025674AqueousVKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRG
Ga0208019_110975243300025687AqueousVNVVSINASSSEPVPLQRLPLIQRNPVGQPRYYWNEARPDLRYSSITSILSATQSEATKMALRRW
Ga0208164_101859013300027224EstuarineVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDETRDQAAKRGSQI
Ga0209893_101155013300027940SandVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDETRDQAAK
Ga0307375_1021307013300031669SoilVKLVTITESTDGRVPLQRLPLIQRNPVGQPRYYWNEARPELKYTSITSILSATQSENTKYALRRWKQKIIAEGGDPDETRDQAARRGSLIHDWFE
Ga0315909_1028066513300031857FreshwaterVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGD
Ga0315901_1089572433300031963FreshwaterMPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKAKIIAE
Ga0315902_1093357333300032093FreshwaterVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKM
Ga0334982_0067281_3_2453300033981FreshwaterMTLVTIPGNSREPVPLQRLPLIQRNPVGQPRYYWNETRPDLRYSSITSILSATQSEATRQALRRWKAKIIAEGGDPDETRD
Ga0334982_0507144_1_1983300033981FreshwaterVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWK
Ga0335028_0194584_1_2103300034071FreshwaterVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKII
Ga0335028_0477715_462_6923300034071FreshwaterVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKILAEGGDPD
Ga0335010_0071325_2216_24043300034092FreshwaterMLVTMHESSSELVPLQRLPLIQRNPVGQPRFYWNEARPDLRYASITSVLSATQSEATKQALRR
Ga0335027_0132614_1605_18533300034101FreshwaterMTLVTIPGNSREPVPLQRLPLIQRNPVGQPRYYWNETRPDLRYSSITSILSATQSEATRQALRRWKAKIIAEGGDPDETRDQA
Ga0335030_0477407_535_7923300034103FreshwaterVIFVTIPESSSDFVPLQRLPLIQRNPVGQPRYYWNERRPDLRYSSITSILSATQSEATKMALRRWKAKIIAEGGDPDETRDQAAKR
Ga0335066_0071501_3_1883300034112FreshwaterMIFVTIPESSSDFVPLQRLPLIQRNPVGQARYYWNERRPDLRYSSITSILSATQSEATKMAL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.