Metagenome / Metatranscriptome Family F103973

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103973
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	80 residues
Representative Sequence	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Number of Associated Samples	82
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.23 %
% of genes near scaffold ends (potentially truncated)	29.70 %
% of genes from short scaffolds (< 2000 bps)	91.09 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.327 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.673 % of family members)
Environment Ontology (ENVO)	Unclassified (33.663 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.426 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.47% β-sheet: 0.00% Coil/Unstructured: 60.53%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02518	HATPase_c	14.85
PF10503	Esterase_PHB	0.99
PF07883	Cupin_2	0.99
PF00486	Trans_reg_C	0.99
PF00501	AMP-binding	0.99
PF08521	2CSK_N	0.99
PF13593	SBF_like	0.99
PF13193	AMP-binding_C	0.99
PF00872	Transposase_mut	0.99
PF13533	Biotin_lipoyl_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.99
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
All Organisms	root	All Organisms	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
cellular organisms	root	All Organisms → cellular organisms	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.76 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.86 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.93 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	10.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.93 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.98 %
Lichenihabitantaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenihabitantaceae	0.99 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.99 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	10.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.93 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.98 %
Lichenihabitans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenihabitantaceae → Lichenihabitans	0.99 %
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	10.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.93 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.98 %
Lichenihabitans psoromatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenihabitantaceae → Lichenihabitans → Lichenihabitans psoromatis	0.99 %
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10078660	Not Available	648	Open in IMG/M
3300001867\|JGI12627J18819_10142464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	979	Open in IMG/M
3300002245\|JGIcombinedJ26739_100482849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1116	Open in IMG/M
3300002245\|JGIcombinedJ26739_101442493	Not Available	582	Open in IMG/M
3300002914\|JGI25617J43924_10218397	Not Available	636	Open in IMG/M
3300003505\|JGIcombinedJ51221_10138735	Not Available	979	Open in IMG/M
3300003505\|JGIcombinedJ51221_10224587	Not Available	762	Open in IMG/M
3300005167\|Ga0066672_10732178	Not Available	630	Open in IMG/M
3300005434\|Ga0070709_10175227	Not Available	1502	Open in IMG/M
3300005435\|Ga0070714_100548545	Not Available	1106	Open in IMG/M
3300005436\|Ga0070713_100241408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1645	Open in IMG/M
3300005436\|Ga0070713_100649233	Not Available	1005	Open in IMG/M
3300005437\|Ga0070710_10054288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	2260	Open in IMG/M
3300005439\|Ga0070711_100202824	Not Available	1531	Open in IMG/M
3300005439\|Ga0070711_100663267	Not Available	875	Open in IMG/M
3300005467\|Ga0070706_100183002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1957	Open in IMG/M
3300005518\|Ga0070699_101604350	Not Available	596	Open in IMG/M
3300005602\|Ga0070762_10433115	Not Available	852	Open in IMG/M
3300005921\|Ga0070766_10216553	Not Available	1203	Open in IMG/M
3300006028\|Ga0070717_10180301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1841	Open in IMG/M
3300006163\|Ga0070715_10192871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1030	Open in IMG/M
3300006173\|Ga0070716_100688584	Not Available	780	Open in IMG/M
3300006804\|Ga0079221_11487590	Not Available	543	Open in IMG/M
3300006954\|Ga0079219_11354842	Not Available	631	Open in IMG/M
3300006954\|Ga0079219_11363186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	630	Open in IMG/M
3300007258\|Ga0099793_10528379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300007788\|Ga0099795_10175066	Not Available	893	Open in IMG/M
3300009143\|Ga0099792_10054529	All Organisms → cellular organisms → Bacteria	1960	Open in IMG/M
3300010159\|Ga0099796_10075641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1225	Open in IMG/M
3300012202\|Ga0137363_11057371	Not Available	690	Open in IMG/M
3300012361\|Ga0137360_11831603	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300012362\|Ga0137361_10832817	Not Available	839	Open in IMG/M
3300012582\|Ga0137358_10684821	Not Available	686	Open in IMG/M
3300012685\|Ga0137397_10188326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36	1534	Open in IMG/M
3300012917\|Ga0137395_10499553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	876	Open in IMG/M
3300012922\|Ga0137394_10151916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenihabitantaceae → Lichenihabitans → Lichenihabitans psoromatis	1970	Open in IMG/M
3300012923\|Ga0137359_11099010	Not Available	680	Open in IMG/M
3300012927\|Ga0137416_10708247	Not Available	885	Open in IMG/M
3300012927\|Ga0137416_11606817	Not Available	592	Open in IMG/M
3300012960\|Ga0164301_11379550	Not Available	575	Open in IMG/M
3300012989\|Ga0164305_10915108	Not Available	738	Open in IMG/M
3300015242\|Ga0137412_10169512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1755	Open in IMG/M
3300020579\|Ga0210407_10238291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1417	Open in IMG/M
3300020579\|Ga0210407_10820629	Not Available	716	Open in IMG/M
3300020580\|Ga0210403_10368012	Not Available	1175	Open in IMG/M
3300020581\|Ga0210399_10155205	Not Available	1893	Open in IMG/M
3300020581\|Ga0210399_11135600	Not Available	623	Open in IMG/M
3300020583\|Ga0210401_10655385	Not Available	911	Open in IMG/M
3300021088\|Ga0210404_10318230	Not Available	859	Open in IMG/M
3300021088\|Ga0210404_10561701	Not Available	647	Open in IMG/M
3300021168\|Ga0210406_10352564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1187	Open in IMG/M
3300021171\|Ga0210405_10074060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	2682	Open in IMG/M
3300021171\|Ga0210405_10780224	Not Available	733	Open in IMG/M
3300021178\|Ga0210408_10019449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5436	Open in IMG/M
3300021178\|Ga0210408_10110956	Not Available	2159	Open in IMG/M
3300021178\|Ga0210408_10547807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	918	Open in IMG/M
3300021178\|Ga0210408_10602058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	870	Open in IMG/M
3300021178\|Ga0210408_11061623	Not Available	624	Open in IMG/M
3300021180\|Ga0210396_11237261	Not Available	623	Open in IMG/M
3300021404\|Ga0210389_10228036	Not Available	1455	Open in IMG/M
3300021405\|Ga0210387_10481854	Not Available	1102	Open in IMG/M
3300021406\|Ga0210386_11184917	Not Available	646	Open in IMG/M
3300021433\|Ga0210391_11428002	Not Available	532	Open in IMG/M
3300021475\|Ga0210392_10114792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1794	Open in IMG/M
3300021479\|Ga0210410_10029600	All Organisms → cellular organisms → Bacteria → Proteobacteria	4740	Open in IMG/M
3300021479\|Ga0210410_11253566	Not Available	633	Open in IMG/M
3300022726\|Ga0242654_10383947	Not Available	535	Open in IMG/M
3300024288\|Ga0179589_10270381	Not Available	759	Open in IMG/M
3300025898\|Ga0207692_10498371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	772	Open in IMG/M
3300025905\|Ga0207685_10141728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1078	Open in IMG/M
3300025911\|Ga0207654_11059349	Not Available	590	Open in IMG/M
3300025916\|Ga0207663_11040895	Not Available	657	Open in IMG/M
3300025929\|Ga0207664_10311457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1387	Open in IMG/M
3300025939\|Ga0207665_10683652	Not Available	806	Open in IMG/M
3300026356\|Ga0257150_1015672	Not Available	1048	Open in IMG/M
3300026489\|Ga0257160_1014540	Not Available	1181	Open in IMG/M
3300026494\|Ga0257159_1026203	Not Available	964	Open in IMG/M
3300026496\|Ga0257157_1022586	Not Available	1026	Open in IMG/M
3300026496\|Ga0257157_1051270	Not Available	695	Open in IMG/M
3300026508\|Ga0257161_1081875	Not Available	667	Open in IMG/M
3300026551\|Ga0209648_10018411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6103	Open in IMG/M
3300026551\|Ga0209648_10185142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1607	Open in IMG/M
3300026557\|Ga0179587_10169715	Not Available	1369	Open in IMG/M
3300026557\|Ga0179587_10780303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300026998\|Ga0208369_1002379	Not Available	1516	Open in IMG/M
3300027069\|Ga0208859_1010117	Not Available	1033	Open in IMG/M
3300027583\|Ga0209527_1050242	Not Available	939	Open in IMG/M
3300027610\|Ga0209528_1118961	Not Available	582	Open in IMG/M
3300027684\|Ga0209626_1063763	Not Available	931	Open in IMG/M
3300027884\|Ga0209275_10480100	Not Available	707	Open in IMG/M
3300027889\|Ga0209380_10001301	All Organisms → cellular organisms → Bacteria → Proteobacteria	16944	Open in IMG/M
3300027903\|Ga0209488_10040484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3414	Open in IMG/M
3300028047\|Ga0209526_10915557	Not Available	532	Open in IMG/M
3300028906\|Ga0308309_10204907	Not Available	1627	Open in IMG/M
3300029636\|Ga0222749_10104577	Not Available	1333	Open in IMG/M
3300030991\|Ga0073994_11592581	Not Available	594	Open in IMG/M
3300031057\|Ga0170834_107010163	Not Available	556	Open in IMG/M
3300031446\|Ga0170820_10346132	Not Available	677	Open in IMG/M
3300031753\|Ga0307477_10078198	All Organisms → cellular organisms → Bacteria → Proteobacteria	2291	Open in IMG/M
3300031753\|Ga0307477_10679788	Not Available	690	Open in IMG/M
3300032180\|Ga0307471_103536174	Not Available	553	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.01%
Plants	Host-Associated → Plants	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.35%
Loam	Environmental → Terrestrial → Soil → Loam	33.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100786601	3300001545	Forest Soil	MKDFLVVPRKKAVGLVRTPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
JGI12627J18819_101424642	3300001867	Forest Soil	MKASLIIPRRKAVGFVRSPDDAKNMVTASTSLARESSDDLTVVLTFSLLGLTLSLLAIGRIGFISPEYMANLLLLF*
JGIcombinedJ26739_1004828491	3300002245	Forest Soil	MKDISVVPQKKAVGLVRPPDDTAKIMHRSTSLARESSDDLIIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF*
JGIcombinedJ26739_1014424931	3300002245	Forest Soil	MKDFLVVPQKKAVGLVRAPEDAKKLTSRRASLAKESGDDFTIVLTFSLLGLALSLLAIGR
JGI25617J43924_102183971	3300002914	Grasslands Soil	MKDFLVVPRKRAVGLVRAPDDTKKLTSRRASLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
JGIcombinedJ51221_101387351	3300003505	Forest Soil	MKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
JGIcombinedJ51221_102245871	3300003505	Forest Soil	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKEASDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
Ga0066672_107321781	3300005167	Soil	MKDFLVVPSKKAEGLVRSPNDTKKMTYRSASLARESSDDLRAVVTFSLLGLALSLLAIGKIGFINAEYLADLLVLF*
Ga0070709_101752272	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLVKESSDDFTIVLTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
Ga0070714_1005485453	3300005435	Agricultural Soil	MSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDHAEKMMYRSASFAQESNDDLTIVVTFSLLGLAISLLAIGRAGFIDPEYMANLLLLF*
Ga0070713_1002414082	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPEYMANLLLLF*
Ga0070713_1006492331	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
Ga0070710_100542883	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPQYMANLLLLF*
Ga0070711_1002028244	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKDFLVVPRKKAVGLVRAPDDTKKLRSRRAFLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
Ga0070711_1006632671	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPEYMANLLLLF*
Ga0070706_1001830022	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKAFFVVPRKKAVGLVSAPDGTNKMTYRSVSLGRESSDDLRAVVTFSLLGLALSLLAIGKVGFINAEYLADLLVLF*
Ga0070699_1016043501	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	EAPLYGDEAMKAFFVVPRKKAVGLVSAPDGTNKMTYRSVSLGRESSDDLRAVVTFSLLGLALSLLAIGKVGFINAEYLADLLVLF*
Ga0070762_104331152	3300005602	Soil	MSVEARDYSGGDAAMKDFLVVPRKKAVGLVRAPDAMKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
Ga0070766_102165532	3300005921	Soil	MSVEARDYSGGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF*
Ga0070717_101803013	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPQYMANLLLLF*
Ga0070715_101928711	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	ASPSFPPKPLTSLFQRRASVSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPEYMANLLLLF*
Ga0070716_1006885842	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLAISLLAIGRAGFIDPEYMANLLLLF*
Ga0079221_114875902	3300006804	Agricultural Soil	VRPSYGDEAMKASLIIPRRKAVGFVRSPDDAKNMVTASTSLARESSDDFTVVLTFSLLGLALSLLAIGRIGFIIPEYMANLLLLF*
Ga0079219_113548422	3300006954	Agricultural Soil	VRPSYGDEAMKASLIIPRRKVVGFVRSPDDAKKMVSASTSLARESSDDFTIVLTFSLLGLALSLLTIGGVGFIDPEYMANLLLLF*
Ga0079219_113631861	3300006954	Agricultural Soil	MKDSLILPRRKAVDFVRSPDDAKNMVTASTSLARESSDDFTVVLTFSLLGLALSFLAIGRIGFIS
Ga0099793_105283791	3300007258	Vadose Zone Soil	MKDFLVVPKKAVGLVRPPDDTAKIMCRSTSLARESIDDLIIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF
Ga0099795_101750661	3300007788	Vadose Zone Soil	MKDFLVVPKKAVGLVRPPDDTAKIMCRSTSLARETRGDLTIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF*
Ga0099792_100545292	3300009143	Vadose Zone Soil	MKDFLVVPKKAVGLVRPPDDTAKIMCRSTSLAREARGDLTFVATFSLLGLALSLLAIGRIGFIDPEYLADLLMLF*
Ga0099796_100756412	3300010159	Vadose Zone Soil	MKDFLVVPKKAVGLVRPPDDTATIMCRSTSLARGTRGDLTIVATFSLLGLALSLLAIGRIGFIDPEYLADLLMLF*
Ga0137363_110573711	3300012202	Vadose Zone Soil	MKDFLVVPRKRAVGFVRPPDDTAKMCRSTSLARESSDDLIIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF*
Ga0137360_118316031	3300012361	Vadose Zone Soil	MKDFLVVPKKAVDLVRPPDDTAKIMCRSTSLAREARGDLTFVAACSLLGFAFSLLSSGRIGFSDPEYLADLLM
Ga0137361_108328172	3300012362	Vadose Zone Soil	MKDFLVVPKKAVDLVRPPDDTAKIICRSTSLARESSGDLTIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF*
Ga0137358_106848211	3300012582	Vadose Zone Soil	MKDFLVVPKKAVDLVRPPDDTAKIICRSTSLARESSGDLTIVATFSLLGLALSLLAIGR
Ga0137397_101883262	3300012685	Vadose Zone Soil	MKDFLVVPKKAVGLVRPRDDTAKIMCRSTSLARGTRGDLTIVATFSLLGLALSLLAIGRIGFIDPEYLADLLMLF*
Ga0137395_104995531	3300012917	Vadose Zone Soil	MKDFLVVPKKAVDLVRPPDDTAKIICRSTSLAREARGDLTFVATFSLLGLALSLLAIGRIGFIDPEYLADLLMLF*
Ga0137394_101519164	3300012922	Vadose Zone Soil	MKDFLVVPKKAVGLVRPPDDTAKIMCRSTSLAREARGDLTFVATFSLLGLALSLFAIGRIGFIDPEYLADLLMLF*
Ga0137359_110990102	3300012923	Vadose Zone Soil	MKDFLVVPRKRAVGFVRPPDDTAKIMCRSTSLAREARGDLTFVATFSLLGLALSLLAIGRIGFIDPEYLADLLMLF*
Ga0137416_107082471	3300012927	Vadose Zone Soil	MKAFLVVLRKKAVGFVRSPDDAGEMMYRSTSLARETSGDLTIVVTFSLLGLALSLLAIESGLIDAEHMADLLMLF*
Ga0137416_116068172	3300012927	Vadose Zone Soil	LVRPPDDTAKIICRSTSLARESSGDLTIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF*
Ga0164301_113795502	3300012960	Soil	MKDFLVVPRKKAVGLVRASDDTKKLTSRRTSLAKESGDDFTIVMTFSLLGLALSLLAIGLLGFIDAGSLANMLVLF*
Ga0164305_109151081	3300012989	Soil	MKAFLVVLRKKAVGFVRSPDHAEKMMYRSASFAQESNDDLTIVVTFSLLGLAISLLAIGRAGFIDPEYMANLLLLF*
Ga0137412_101695124	3300015242	Vadose Zone Soil	MKDFLVVPKKAVGLVRPPDDTAKMCRSTSLARESSDDLIIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF*
Ga0210407_102382911	3300020579	Soil	MKDISVVPQKKAVGLVRPPDDTTKIMHRSTSLARESSDDLIIVAAFSLLGLALSLLAIGRVGFIDPEYLADLLMLF
Ga0210407_108206292	3300020579	Soil	MKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADL
Ga0210403_103680122	3300020580	Soil	MSVEARDYSGGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210399_101552051	3300020581	Soil	LFQKGASVPMSVEARDYSVGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210399_111356001	3300020581	Soil	MKDFLVVPRKKAVGLVRTPDDTKTLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210401_106553852	3300020583	Soil	VSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDHAEKMMYRSASFAQESNDDLTIVVTFSLLGLAISLLAIGRAGFIDPEYMANLLLLF
Ga0210404_103182302	3300021088	Soil	MKDFLVVPQKKAVGLVRAPEDAKKLTSRRASLAKESGDDFTIVLTFSLLGLALSLLAIGRLGFIDAGSLANMLVLF
Ga0210404_105617012	3300021088	Soil	MSVEARDYSVGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210406_103525642	3300021168	Soil	VSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDHAEKMMYRSASFAQESNDDLTIVVTFSLLGLSISLLAIGRAGFIDPEYMANLLLLF
Ga0210405_100740601	3300021171	Soil	LVRAPDATKKLTSRRTSLVKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210405_107802241	3300021171	Soil	AVGLVRAPDDTKKLTSRRASLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210408_100194493	3300021178	Soil	MKDFLVVPRKKAVGLVRTPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210408_101109562	3300021178	Soil	MKALLVVLRKKAVGFVRSPDDAGEMMYRSTSLARETSGDLTIVVTFSLLGLALSLLAIESGLINAEYMADLFMLF
Ga0210408_105478072	3300021178	Soil	MKAFLVVPRKKTIGLVRAPDDAKKTMYRSTSLARESSDDLTIVATFSLLGLALSLLAIGKLGFIDPEYLADLLLLF
Ga0210408_106020582	3300021178	Soil	MKDISVVPQKKAVGLVRPPDDTAKIMHRSTSLARESSDDLIIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF
Ga0210408_110616232	3300021178	Soil	AVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210396_112372611	3300021180	Soil	KSLTSLFQKGASVPMSVEARDYSVGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210389_102280362	3300021404	Soil	DYSVGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210387_104818542	3300021405	Soil	GETTLCGDAAMKDFLVVPQKKAVGLVRAPEDAKKLTSRRASLAKESGDDFTIVLTFSLLGLALSLLAIGRLGFIDAGSLANMLVLF
Ga0210386_111849172	3300021406	Soil	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210391_114280021	3300021433	Soil	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210392_101147921	3300021475	Soil	MKDFLVVPRKKAVSLVRAPDDTKKLTSRRTSLVKESSDDFTIVLTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0210410_100296006	3300021479	Soil	MSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDHAEKMMYRSASFAQESNDDLTIVVTFSLLGLAISLLAIGRAGFIDPEYMANLLLLF
Ga0210410_112535661	3300021479	Soil	QKGASVPMSVEARDYSVGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0242654_103839471	3300022726	Soil	VPMSVEARDYSVGDAAMKDFLVVPRKKAVGLVRTPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0179589_102703811	3300024288	Vadose Zone Soil	MKAFLVVLRKKAVGFVRSPDDAGEMMYRSTSLARETSGDLTIVVTFSLLGLALSLLAIESGLIDAEHMADLLMLF
Ga0207692_104983711	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PPKPLTSLFQRRASVSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPQYMANLLLLF
Ga0207685_101417281	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	SFQRRASVSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPEYMANLLLLF
Ga0207654_110593491	3300025911	Corn Rhizosphere	VSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDHAEKMMYRSASFAQESNDLTIVVTFSLLGLAISLLAIGRAGFIDPEYM
Ga0207663_110408951	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPQYMANLLLLF
Ga0207664_103114572	3300025929	Agricultural Soil	MKDFLVVPRKKAIGLVRAPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0207665_106836521	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VSMSVEARDPLYGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLAISLLAIGRAGFIDPEYMANLLLLF
Ga0257150_10156722	3300026356	Soil	RRETTLYGDAAMKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0257160_10145402	3300026489	Soil	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESGDDFTIVVTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0257159_10262031	3300026494	Soil	MKDFLVVPKKAVGLVRPPDDTAKIMCRSTSLARETRGDLTIVATFSLLGLALSLLAIGRIGFIDPEYLADLLMLF
Ga0257157_10225861	3300026496	Soil	GLVRPPDDTAKIMCRSTSLAREARGDLTFVATFSLLGLALSLLAIGRIGFIDPEYLADLLMLF
Ga0257157_10512702	3300026496	Soil	AAMKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0257161_10818752	3300026508	Soil	MKDFLVVPKKAVGLVRPPDDTAKIMCRSTSLARETSGDLTIVATFSLLGLALSLLAIGRVGFIDPEYLADLLMLF
Ga0209648_100184111	3300026551	Grasslands Soil	MKDFLVVPRKRAVGLVRAPDDTKKLTSRRASLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0209648_101851422	3300026551	Grasslands Soil	MRVEARESLYGDEAMKAFLVAPRKKAIGFVRSPDRAEKMKYRSASLARESSDDLTIVVTFSLLGLALSLLAIESGHIDAEYMADLLLLF
Ga0179587_101697151	3300026557	Vadose Zone Soil	MKAFLVVLRKKAVGFVRSPDDAGEMMYRSTSLARETSGDLTIVVTFSLLGLALSLLAIESGLIDAEYMADLLMLF
Ga0179587_107803031	3300026557	Vadose Zone Soil	MKDFLVVPKKAVGLVRPPDDTAKIMCRSTSLAREARGDLTFVATFSLLGLALSLLAIGRIGFIDPEYL
Ga0208369_10023792	3300026998	Forest Soil	MSVEARDYSVGDAAMKDFLVVPRKKAVGLVRAPDDTKKLTSRRASLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0208859_10101171	3300027069	Forest Soil	MSVEARDYSVGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0209527_10502422	3300027583	Forest Soil	MKDFLVVPRKKAVGLVRTPDDTKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0209528_11189611	3300027610	Forest Soil	MKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0209626_10637631	3300027684	Forest Soil	MSVEARDYSGGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLV
Ga0209275_104801001	3300027884	Soil	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKDSSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0209380_100013011	3300027889	Soil	LFQKGASVPMSVEARDYSGGDAAMKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0209488_100404841	3300027903	Vadose Zone Soil	MKDFLVVPKKAVGLVRPPDDTAKIMCRSTSLAREARGDLTFVATFSLLGLALSLLAIGRIGFIDPEYLADLLMLF
Ga0209526_109155571	3300028047	Forest Soil	LVVPRKKAVGLVRAPDATKKLTSRRTSLAKESRDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0308309_102049071	3300028906	Soil	MKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLSFIDAGS
Ga0222749_101045772	3300029636	Soil	MSVEARDYSVGDAAMKDFLVVPRKKAVGLVRTPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0073994_115925811	3300030991	Soil	MKDFLVVPRKKAVGLVRAPDATKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0170834_1070101631	3300031057	Forest Soil	LYGDAAMKDFLVVPRKKAVGLVRAPDDTKKLTSRRTSLAKESSDDLTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0170820_103461322	3300031446	Forest Soil	MKDFLVVPRKKAVDLVRAPDDTKKLTSRRTSLVKESSDDFTIVLSFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0307477_100781982	3300031753	Hardwood Forest Soil	MKAFLVVPRRKAVGSVRSPHDAEKMISRGTSLAGESSDDFTIVLTFSLLGLALSLLAIGKIGFIDANYMADLLLLL
Ga0307477_106797881	3300031753	Hardwood Forest Soil	MKDFLVVPRNKAVGLVRAPDDTKKLTSRRTSLAKESSDDFTIVMTFSLLGLALSLLAIGRLGFIDAGSLADLLVLF
Ga0307471_1035361741	3300032180	Hardwood Forest Soil	YGDEAMKAFLVSAKKAVGFVRSPDDAEKMMYRSASFARESNDDLTIVVTFSLLGLALSLLAIGRAGFIDPEYMANLLLLF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103973

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences