Metagenome / Metatranscriptome Family F103860

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F103860
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	70 residues
Representative Sequence	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVVVEDEADAEPEQRLELVFFLRTWALSHPDLAFEVQDGV
Number of Associated Samples	91
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	43.56 %
% of genes near scaffold ends (potentially truncated)	27.72 %
% of genes from short scaffolds (< 2000 bps)	79.21 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (72.277 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.822 % of family members)
Environment Ontology (ENVO)	Unclassified (38.614 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.525 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.00% β-sheet: 20.00% Coil/Unstructured: 50.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
e.8.1.0: automated matches	d4ahca2	4ahc	0.7564
d.58.6.0: automated matches	d4dz6a1	4dz6	0.72111
d.58.29.2: GGDEF domain	d1w25a3	1w25	0.71517
e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain	d1jiha2	1jih	0.71369
d.58.19.1: Bacterial exopeptidase dimerisation domain	d1r3na2	1r3n	0.71277

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00072	Response_reg	29.70
PF00196	GerE	23.76
PF01478	Peptidase_A24	2.97
PF14378	PAP2_3	2.97
PF02643	DUF192	1.98
PF16184	Cadherin_3	0.99
PF08534	Redoxin	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1430	Uncharacterized conserved membrane protein, UPF0127 family	Function unknown [S]	1.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	48.51 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	47.52 %
Unclassified	root	N/A	27.72 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	23.76 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	1.98 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.99 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	22.77 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	1.98 %
Egicoccales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales	0.99 %
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.77 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1.98 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	0.99 %
Egicoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.77 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	1.98 %
Egicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae → Egicoccus	0.99 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.77 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1.98 %
Egicoccus halophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae → Egicoccus → Egicoccus halophilus	0.99 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0664675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1049	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101630966	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300000550\|F24TB_10723591	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300000891\|JGI10214J12806_11690044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1076	Open in IMG/M
3300000955\|JGI1027J12803_103998637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1127	Open in IMG/M
3300000956\|JGI10216J12902_103676932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1237	Open in IMG/M
3300003319\|soilL2_10169702	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300004081\|Ga0063454_100092329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1409	Open in IMG/M
3300004114\|Ga0062593_100864979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	909	Open in IMG/M
3300004114\|Ga0062593_101941077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300004156\|Ga0062589_100106671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1802	Open in IMG/M
3300004156\|Ga0062589_100587041	Not Available	963	Open in IMG/M
3300004156\|Ga0062589_101563031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300004157\|Ga0062590_101773227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae → Egicoccus → Egicoccus halophilus	632	Open in IMG/M
3300004463\|Ga0063356_101598947	Not Available	970	Open in IMG/M
3300004479\|Ga0062595_100129827	Not Available	1417	Open in IMG/M
3300004480\|Ga0062592_100347682	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300004480\|Ga0062592_101593317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	631	Open in IMG/M
3300004643\|Ga0062591_100745169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	894	Open in IMG/M
3300004643\|Ga0062591_102212659	Not Available	572	Open in IMG/M
3300005093\|Ga0062594_100012315	All Organisms → cellular organisms → Bacteria	3173	Open in IMG/M
3300005093\|Ga0062594_101858292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300005329\|Ga0070683_101637480	Not Available	619	Open in IMG/M
3300005332\|Ga0066388_100062697	All Organisms → cellular organisms → Bacteria	3957	Open in IMG/M
3300005356\|Ga0070674_100138244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1825	Open in IMG/M
3300005364\|Ga0070673_101114160	Not Available	738	Open in IMG/M
3300005455\|Ga0070663_100968442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300005564\|Ga0070664_100937780	Not Available	812	Open in IMG/M
3300005840\|Ga0068870_10381454	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300005844\|Ga0068862_100947544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	849	Open in IMG/M
3300005937\|Ga0081455_10075148	All Organisms → cellular organisms → Bacteria	2788	Open in IMG/M
3300006058\|Ga0075432_10144315	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300006169\|Ga0082029_1271064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1266	Open in IMG/M
3300006196\|Ga0075422_10295927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	692	Open in IMG/M
3300009094\|Ga0111539_10241960	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300009098\|Ga0105245_10670380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1068	Open in IMG/M
3300009101\|Ga0105247_10817115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300009148\|Ga0105243_10211481	All Organisms → cellular organisms → Bacteria	1708	Open in IMG/M
3300009176\|Ga0105242_11315849	Not Available	747	Open in IMG/M
3300009545\|Ga0105237_12378217	Not Available	540	Open in IMG/M
3300009553\|Ga0105249_10072859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3176	Open in IMG/M
3300009553\|Ga0105249_11372486	Not Available	779	Open in IMG/M
3300009789\|Ga0126307_10000155	All Organisms → cellular organisms → Bacteria	41592	Open in IMG/M
3300009840\|Ga0126313_11665668	Not Available	532	Open in IMG/M
3300010040\|Ga0126308_10049522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2434	Open in IMG/M
3300010045\|Ga0126311_10088420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2099	Open in IMG/M
3300010047\|Ga0126382_12343148	Not Available	517	Open in IMG/M
3300010375\|Ga0105239_10186942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2319	Open in IMG/M
3300010397\|Ga0134124_10941234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300010399\|Ga0134127_10943445	Not Available	920	Open in IMG/M
3300010400\|Ga0134122_11362150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	721	Open in IMG/M
3300010403\|Ga0134123_11345069	Not Available	752	Open in IMG/M
3300012208\|Ga0137376_10116666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2276	Open in IMG/M
3300012469\|Ga0150984_116994853	Not Available	813	Open in IMG/M
3300012503\|Ga0157313_1029112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	616	Open in IMG/M
3300012884\|Ga0157300_1099223	Not Available	535	Open in IMG/M
3300012899\|Ga0157299_10234297	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012901\|Ga0157288_10407969	Not Available	510	Open in IMG/M
3300012907\|Ga0157283_10164058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300012908\|Ga0157286_10018801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1479	Open in IMG/M
3300012910\|Ga0157308_10008816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2019	Open in IMG/M
3300012911\|Ga0157301_10211774	Not Available	659	Open in IMG/M
3300013297\|Ga0157378_10614765	Not Available	1099	Open in IMG/M
3300014969\|Ga0157376_13064681	Not Available	506	Open in IMG/M
3300015371\|Ga0132258_10856377	All Organisms → cellular organisms → Bacteria	2294	Open in IMG/M
3300015373\|Ga0132257_104323590	Not Available	517	Open in IMG/M
3300015374\|Ga0132255_100092418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4084	Open in IMG/M
3300018054\|Ga0184621_10301050	Not Available	566	Open in IMG/M
3300018061\|Ga0184619_10523858	Not Available	521	Open in IMG/M
3300018469\|Ga0190270_10066800	All Organisms → cellular organisms → Bacteria	2594	Open in IMG/M
3300018469\|Ga0190270_10792450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	953	Open in IMG/M
3300019269\|Ga0184644_1417691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	717	Open in IMG/M
3300019356\|Ga0173481_10000085	All Organisms → cellular organisms → Bacteria	15170	Open in IMG/M
3300019767\|Ga0190267_10000846	All Organisms → cellular organisms → Bacteria	7176	Open in IMG/M
3300019885\|Ga0193747_1051221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300022898\|Ga0247745_1087545	Not Available	527	Open in IMG/M
3300024055\|Ga0247794_10024247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1529	Open in IMG/M
3300025901\|Ga0207688_10151028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1372	Open in IMG/M
3300025908\|Ga0207643_10079746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1895	Open in IMG/M
3300025927\|Ga0207687_10170800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1677	Open in IMG/M
3300025937\|Ga0207669_10060340	All Organisms → cellular organisms → Bacteria	2325	Open in IMG/M
3300025940\|Ga0207691_11153238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	643	Open in IMG/M
3300025944\|Ga0207661_10019155	All Organisms → cellular organisms → Bacteria	5097	Open in IMG/M
3300025945\|Ga0207679_10802996	Not Available	858	Open in IMG/M
3300025960\|Ga0207651_11036612	Not Available	734	Open in IMG/M
3300025961\|Ga0207712_10298252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1321	Open in IMG/M
3300026116\|Ga0207674_10043370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4638	Open in IMG/M
3300027907\|Ga0207428_10065250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2873	Open in IMG/M
3300028380\|Ga0268265_10799083	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300028715\|Ga0307313_10068929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1054	Open in IMG/M
3300028718\|Ga0307307_10049068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1233	Open in IMG/M
3300028791\|Ga0307290_10038963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1700	Open in IMG/M
3300028793\|Ga0307299_10315643	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300028819\|Ga0307296_10032305	All Organisms → cellular organisms → Bacteria	2761	Open in IMG/M
3300028828\|Ga0307312_11048554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300031548\|Ga0307408_100203421	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300031548\|Ga0307408_101783662	Not Available	588	Open in IMG/M
3300031731\|Ga0307405_10859499	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300031731\|Ga0307405_12023276	Not Available	516	Open in IMG/M
3300031847\|Ga0310907_10049814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1620	Open in IMG/M
3300031901\|Ga0307406_10166230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1592	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.42%
Host-Associated	Host-Associated	41.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.45%
Plants	Host-Associated → Plants	41.58%
Aquatic	Environmental → Aquatic	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.88%
Sediment	Environmental → Aquatic → Sediment	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.91%
Loam	Environmental → Terrestrial → Soil → Loam	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	15.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.99%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.99%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_06646752	3300000033	Soil	VPQEVRLTPPELVDXFVAVLRDAGTPARKRGRVVVVEDDLDGEPERHLELIFFLRTWALSHPNLAYEVLDSR*
INPhiseqgaiiFebDRAFT_1016309662	3300000364	Soil	VVPQEVRLTPPELVDDFVAMLRDAGTPAKKCGRVVVVDDAAGAEPEWRLELLFFLRIWALSHPDLAFEVRERD*
F24TB_107235912	3300000550	Soil	MSRAPTECDEWGVLQEVRLTSPELVDELVAVLRDAGTPARKRGRVVVVGDEPDGESERSLELLFFLRTWALAHPDLDFEIRERD*
JGI10214J12806_116900441	3300000891	Soil	LSPPELVDDLVAVLRDTGKAVRKRGRVVIVEDDAAAEPEQRLELVFFLRTWALSHPELAFEVQDGQ*
JGI1027J12803_1039986371	3300000955	Soil	PELVDDFVAMLRDAGTPAKKCGRVVVVDDAAGAEPEWRLELLFFLRIWALSHPDLAFEVRERD*
JGI10216J12902_1036769322	3300000956	Soil	VVPQEVRLTPPELVDDFVAVLRDAGTPAKKCGRVVVVGDAAGAEPEWRLELLFFLRTWALSHPDLAFEVRERD*
soilL2_101697022	3300003319	Sugarcane Root And Bulk Soil	VPQEVRLTPPELVDDFVAVLQDAGTSARRRGLVVVIDDDEDAEPERHLELVFFLRTWALSHPELAYEVLDSR*
Ga0063454_1000923292	3300004081	Soil	VPQEVRLTPPELVDDFIAVLRDAGKAVRKRGRVVVVEDEADAEPEQRLELVFFLRTWALSHPDVAFEVQDAI*
Ga0062593_1008649791	3300004114	Soil	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHPELAFEVRDAI*
Ga0062593_1019410771	3300004114	Soil	VPQEVRLTPPELVDDFVAVLRDAGTPARKRGRVVVVEDDLDGEPERHLELIFFLRTWALSHPNLAYEVLDSR*
Ga0062589_1001066712	3300004156	Soil	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHP
Ga0062589_1005870411	3300004156	Soil	VPQEVRLSPPELVDDLVAVLRDTGKAVRKRGRVVIVEDDAAAEPEQRLELVFFLRTWALSHPELAFEVQDGQ*
Ga0062589_1015630311	3300004156	Soil	VPQEVRLTPPELVDDFVAVLRDAGTPARKRGRVVVVEDDLDGEPERHLELVFFLRTWALSHPELAYEVLDSR*
Ga0062590_1017732271	3300004157	Soil	VPQEVRLTPHELVDDFVAVLRDTGTAARRRGRVVVIDDDEDAEPERQLELLFFLRTWALSHPELAYEVLDSR*
Ga0063356_1015989471	3300004463	Arabidopsis Thaliana Rhizosphere	VPQEVRLTPHELVDDFVAVLRDAGTAARKRGGVVVIDDDEDAEPERHLELLFFLRTWALSHPELAYEVLDSR*
Ga0062595_1001298271	3300004479	Soil	MTPLELVDDLVAVLRNVGTPARKCGRVVVVEDDVDEEPERRLELLLFLRTWALTHPDLAFEVLDRA*
Ga0062592_1003476822	3300004480	Soil	VPQEVRLSPPELVDDLVAVLRDAGKAVRKRGRVVIVEDDAAAEPEQRLELVFFLRTWALSHPELAFEVQDGQ*
Ga0062592_1015933171	3300004480	Soil	PQEVRLTPPELVDDFVAVLRDAGTPARKRGRVVVVEDDLDGEPERHLELIFFLRTWALSHPNLAYEVLDSR*
Ga0062591_1007451692	3300004643	Soil	GVPQEVRLTPPELVDDFVAVLRDAGTPARKRGRVVVVEDDLDGEPERHLELVFFLRTWALSHPELAYEVLDSR*
Ga0062591_1022126591	3300004643	Soil	VDDFVAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHPELAFEVRDAI
Ga0062594_1000123152	3300005093	Soil	MSRAPAHCDEWGVPQEVRLTSPELVDELVAALRDAGTPARKRGRVVVVGDEPDAESERSLELLFFLRTWALAHPDLAFEIRERD*
Ga0062594_1018582921	3300005093	Soil	VVPQEVRLTPPELVDDFVAVLRDAGAPAKKCGRVVIVDDGAGAEPEWRLELLFFLRTWALSHPDLAFEVRERD*
Ga0070683_1016374801	3300005329	Corn Rhizosphere	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVLVEDEVDAEPEQRLELVFFLRTWALSHPEVAFEVEDAI*
Ga0066388_1000626975	3300005332	Tropical Forest Soil	VPQEVRLTPPELVDDFIAVLRDAGKAARKRGRIVIVEDEADAEPEQRLELVFFLRSWSLSHPELAYELLDPAS*
Ga0070674_1001382442	3300005356	Miscanthus Rhizosphere	MSRAPAQCDEWGVPQEVRLTSPELVDELVAALRDAGTPARKRGRVVVVGDEPDAESERSLELLFFLRTWALAHPDLAFEIRERD*
Ga0070673_1011141601	3300005364	Switchgrass Rhizosphere	VPQEVRLTPPELVDDLIAVLRDAGKAVRKRGRVVVVEDEADAEPEQGLELVFFLRTWALSHPGLAFEVQEEI*
Ga0070663_1009684421	3300005455	Corn Rhizosphere	VPQEVRLSPPELVDDLVAVLRDAGKAVRKRGRVVIVEDDTAAEPEQRLELVFFLRTWALSHPELAFEVQDGQ*
Ga0070664_1009377801	3300005564	Corn Rhizosphere	VPQEVRLSPPELVDDLVAVLRDAGKAVRKRGRVVIVEDDTAAEPEQRLELVFFLRTWALSHPELA
Ga0068870_103814542	3300005840	Miscanthus Rhizosphere	VPQEVRLTPPELVDDLIAVLRDAGKAVRKRGRVVVVEDEADAEPEQGLELVFFLHTWALSHPGLAFEVQEEI*
Ga0068862_1009475442	3300005844	Switchgrass Rhizosphere	MSRAPAHCDEWGVPQEVRLTSPELVDELVAALRDAGTPARKRGRVVVVDEPDAESERSLELLFFLRTWALAHPDLAFEIRERD*
Ga0081455_100751484	3300005937	Tabebuia Heterophylla Rhizosphere	MYPAGAKWKEWGVPQELRLAPPELADDFVAVLRDAGTPARKRGRVVVVDDDADAEPERRLELLFFLRAWALSHPELAYEFLHSR*
Ga0075432_101443152	3300006058	Populus Rhizosphere	VPQEVRLSPPELVDDLVAVLRDAGKAVRKRGRVVIVEDDAAAEPEQRLELVFFLRTWALSHPELAFEVQEGQ*
Ga0082029_12710643	3300006169	Termite Nest	GVPQEVRLTPPELADDFIAVLLNAGTPARKRGRVVVVGDDEDAEPERHLELLFFLRTWALSHPDLAFEVLDAH*
Ga0075422_102959271	3300006196	Populus Rhizosphere	VPQEVRLSPPELVDDLVAVLRDAGKAVRKRGRVVIVEDDTAAEPEQRLELVFFLRTWALSHPELAFEVQEGQ*
Ga0111539_102419602	3300009094	Populus Rhizosphere	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVVVEDEADAEPEQRLELVFFLRTWALSHPDLAFEVQDGV*
Ga0105245_106703802	3300009098	Miscanthus Rhizosphere	VDEFITVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI
Ga0105247_108171151	3300009101	Switchgrass Rhizosphere	VDEFIAVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEIQDDI
Ga0105243_102114812	3300009148	Miscanthus Rhizosphere	VDEFIAVLRDAGKAVRKCGRVVIVEDEADAEPEQRLELVFFLRTWALSHPGLAFEIQDDI
Ga0105242_113158492	3300009176	Miscanthus Rhizosphere	VPQEVRLTPPELVDEFIAVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEIQDDI*
Ga0105237_123782171	3300009545	Corn Rhizosphere	VPQEVRLTPPELVDEFIAVLRDAGKAVRKCGRVVIVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI*
Ga0105249_100728592	3300009553	Switchgrass Rhizosphere	VDELVAALRDAGTPARKRGRVVVVGDEPDAESERSLELLFFLRTWALAHPDLAFEIRERD
Ga0105249_113724862	3300009553	Switchgrass Rhizosphere	VDEFIVVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI
Ga0126307_1000015540	3300009789	Serpentine Soil	MFQTGAGCDEYVVPQEVRLTPPELVDDFVAVLRDAGKAVRKCGRVVVVEDEADAAPEQRLELIFFLRTWALSHPDLAFEVQDGV*
Ga0126313_116656682	3300009840	Serpentine Soil	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGCVVVVEDEADAEPEQQLELVFFLRTWALSHPDLAFDVHDAV*
Ga0126308_100495222	3300010040	Serpentine Soil	MFQAGAACDEYVVPQEVRLTPPELVDDFVAVLRDAGKAVRKCGRVVVVEDEADAAPEQRLELIFFLRTWALSHPDLAFEVQDGV*
Ga0126311_100884202	3300010045	Serpentine Soil	MFQAGAGCDEYVVPQEVRLTPPELVDDFVAVLRDAGKAVRKCGRVVVVEDEADAAPEQRLELIFFLRTWALSHPDLAFEVQDGV*
Ga0126382_123431481	3300010047	Tropical Forest Soil	KCDEWGVPQEVRLTPPELVDDFIAVLRDAGKAARRQGRVVIVEDEADSEPEQRLELVFFLRSWSLSHPELAYEVLDSR*
Ga0105239_101869424	3300010375	Corn Rhizosphere	VPQEVRLTPPELVDEFIAVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI*
Ga0134124_109412342	3300010397	Terrestrial Soil	VDEFIAVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI
Ga0134127_109434452	3300010399	Terrestrial Soil	VDDFVAVLRDAGKAVRKRGRVVLVEDDLDAEPEQQLELVFFLRTWALSHPELAFEVKDAI
Ga0134122_113621501	3300010400	Terrestrial Soil	VDDFVAVLRDAGKAVRKRGRVVIVEDEAEAKPEQRLELVFFLRTWALSHPDLAFEVEYTI
Ga0134123_113450692	3300010403	Terrestrial Soil	VDDFVAVLRDTGTAARRRGRVVVIDDDEDAEPERQLELLFFLRTWALSHPEIAYEVLESR
Ga0137376_101166661	3300012208	Vadose Zone Soil	VPQQVRLTPPELVNDFVACLQDTGTPARKKGRFVVIEDDEGEPPAERELELLFFLRSWALSHPGLAFELVENGAEKR*
Ga0150984_1169948532	3300012469	Avena Fatua Rhizosphere	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVVVEDEADPEPEQRLELVFFLRTWALSHPDLAFEVQDAI*
Ga0157313_10291122	3300012503	Arabidopsis Rhizosphere	ARRRLGHADAQHTHLVDDLVAVLRDAGKAVRKRGRVVIVEDDAAAEPEQRLELVFFLRTWALSHPELAFEVQEGQ*
Ga0157300_10992232	3300012884	Soil	ELVDDFVAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHPELAFEVRDAI*
Ga0157299_102342971	3300012899	Soil	VPQEVRLTPPELVDEFIAVLRDAGKAVRKCGRVVVVEDEADAEPEQGLELVFFLHTWALSHPGLAFEVQEEI*
Ga0157288_104079692	3300012901	Soil	RLTPHELVDDFVAVLRDTGTAARRRGRVVVIDDDEDAEPERQLELLFFLRTWALSHPELAYEVLDSR*
Ga0157283_101640582	3300012907	Soil	ELVDDFVAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHPDLAFEVRDAI*
Ga0157286_100188011	3300012908	Soil	VDEFIAVLRDAGKAVRKCGRVVIVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI
Ga0157308_100088161	3300012910	Soil	PELVDDLVAVLRDAGKAVRKRGRVVIVEDDAAAEPEQQLELVFFLRTWALSHPELAFEVQEGQ*
Ga0157301_102117741	3300012911	Soil	VDDFVAVLRDTGTAARRRGRVVVIDDDEDAEPERQLELLFFLRTWALSHPELAYEVLDSR
Ga0157378_106147652	3300013297	Miscanthus Rhizosphere	VDEFIAVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAF
Ga0157376_130646811	3300014969	Miscanthus Rhizosphere	LTPPELVDEFIAVLRDAGKAVRKCGRVVIVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI*
Ga0132258_108563771	3300015371	Arabidopsis Rhizosphere	VDEFIAVLRDAGKAVRKSGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI
Ga0132257_1043235901	3300015373	Arabidopsis Rhizosphere	EFIAVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEIQDDI*
Ga0132255_1000924181	3300015374	Arabidopsis Rhizosphere	PPELVDDLVAVLRDAGKAVRKRGRVVIVEDDTAAEPEQRLELVFFLRTWALSHPELAFEVQDGQ*
Ga0184621_103010501	3300018054	Groundwater Sediment	VRMTPLELVDDLVAVLRNVGTPARKRGRVVVVEDDVDEEPERRLELLFFLRTWALAHPDLTFEVLDCD
Ga0184619_105238582	3300018061	Groundwater Sediment	PEFVNDFVTCLQGAGTQARRKGRFVVIEDDEGEPPAERELELLFFIRSWALSHPGLAFELVENGAKKR
Ga0190270_100668004	3300018469	Soil	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVLVEDEVDAEPEQRLELVFFLRTWALSHPEVAFEVQDAI
Ga0190270_107924502	3300018469	Soil	DDFVAVLCDAGKAVRKCGRVVVVEDEADAAPEQRLELIFFLRTWALSHPDLAFEVQDGV
Ga0184644_14176911	3300019269	Groundwater Sediment	PELVDDFVAVLRDAGKAVRKRGRVVIVEDEAEAKPEQRLELVFFLRTWALSHPDLAFEVQDTL
Ga0173481_1000008515	3300019356	Soil	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHPELAFEVRDAI
Ga0190267_100008461	3300019767	Soil	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVLVEDEVDAEPEQRLELVFFLRTWALSHPEVAFEVEDAI
Ga0193747_10512212	3300019885	Soil	VPQQLRLTPPEFVNDFIACLQGAGTPARKRGRFVVIEDDEGEPTAERELELIFFLRSWALSHPGLAFELVENGAKKR
Ga0247745_10875452	3300022898	Soil	WGVPQEVRLTPPELVDDFVAVLRDAGTPARKRGRVVVVEDDLDGEPERHLELVFFLRTWALSHPELAYEVLDSR
Ga0247794_100242472	3300024055	Soil	VPQEVRLTPPELVDDFIAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHPELAFEVRDAI
Ga0207688_101510282	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VPQEVRLTPPELVDEFIAVLRDAGKAVRKCGRVVIVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI
Ga0207643_100797464	3300025908	Miscanthus Rhizosphere	VPQEVRLTPPELVDDLIAVLRDAGKAVRKRGRVVVVEDEADAEPEQGLELVFFLHTWALSHPGLAFEVQEEI
Ga0207687_101708002	3300025927	Miscanthus Rhizosphere	MSRAPAHCDEWGVPQEVRLTSPELVDELVAALRDAGTPARKRGRVVVVGDEPDAESERSLELLFFLRTWALAHPDLAFEIRERD
Ga0207669_100603402	3300025937	Miscanthus Rhizosphere	MSRAPAQCDEWGVPQEVRLTSPELVDELVAALRDAGTPARKRGRVVVVGDEPDAESERSLELLFFLRTWALAHPDLAFEIRERD
Ga0207691_111532382	3300025940	Miscanthus Rhizosphere	LTPPELVDDFVAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHPELAFEVRDAI
Ga0207661_100191557	3300025944	Corn Rhizosphere	VPQEVRLSPPELVDDLVAVLRDTGKAVRKRGRVVIVEDDAAAEPEQRLELVFFLRTWALSHPELAFEVQDGQ
Ga0207679_108029961	3300025945	Corn Rhizosphere	VPQEVRLSPPELVDDLVAVLRDAGKAVRKRGRVVIVEDDTAAEPEQRLELVFFLRTWALSHPELAFEVQDGQ
Ga0207651_110366121	3300025960	Switchgrass Rhizosphere	VPQEVRLTPPELVDDLIAVLRDAGKAVRKRGRVVVVEDEADAEPEQGLELVFFLRTWALSHPGLAFEVQEEI
Ga0207712_102982521	3300025961	Switchgrass Rhizosphere	TPPELVDEFIVVLRDAGKAVRKCGRVVVVEDEADAEPEQRLELVFFLRTWALSHPGLAFEVQDDI
Ga0207674_100433702	3300026116	Corn Rhizosphere	VPQEVRLSPPELVDDLVAVLRDAGKAVRKRGRVVIVEDDAAAEPEQRLELVFFLRTWALSHPELAFEVQDGQ
Ga0207428_100652506	3300027907	Populus Rhizosphere	AVLRDAGKAVRKRGRVVVVEDEADAEPEQRLELVFFLRTWALSHPDLAFEVQDGV
Ga0268265_107990832	3300028380	Switchgrass Rhizosphere	VVPQEVRLTPPELVDDFVAVLRDAGAPAKKCGRVVIVDDGAGAEPEWRLELLFFLRTWALSHPDLAFEVRERD
Ga0307313_100689291	3300028715	Soil	PQQVRLTPPEFVNDFIACLQGAGTPARKRGRFVVIEDDEGEPTAERELELIFFLRSWALSHPGLAFELVENGA
Ga0307307_100490682	3300028718	Soil	VPQQVRLTPPEFVNDFIACLQGAGTPARKRGRFVVIEDDEGEPTAERELELIFFLRSWALSHPGLAFELVESGA
Ga0307290_100389633	3300028791	Soil	VPQQVRLTPPEFVNDFIACLQGAGTPARKRGRFVVIEDDEGEPTAERELELIFFLRSWALSHPGLAFELVENGA
Ga0307299_103156431	3300028793	Soil	VPQEVRMTPLELVDDLVAVLRNVGTPARKCGRVVVVEDDVDEEPERRLELLFFLRTWALAHPDLAFEVLDCD
Ga0307296_100323052	3300028819	Soil	MTPLELVDDLVAVLRNVGTPARKCGRVVVVEDDVDEEPERRLELLFFLRTWALAHPDLAFEVLDCD
Ga0307312_110485542	3300028828	Soil	VPQQVRLTPPEFVNDFIACLQGAGTPARKRGRFVVIEDDEGEPTAERELELIFFLRSWALSHP
Ga0307408_1002034212	3300031548	Rhizosphere	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVVVEDEADGEPEQRLELVFFLRTWALSHPDLAFEVQDGV
Ga0307408_1017836621	3300031548	Rhizosphere	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVVVEDEADAEPEQRLELVFFLRTWALSHPDLAFEVQDAL
Ga0307405_108594991	3300031731	Rhizosphere	VPQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVVIDDEVDAEPEQRLELVFFLRTWALSHPDLAFDVQDGA
Ga0307405_120232761	3300031731	Rhizosphere	QEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVVVEDEADGEPEQRLELVFFLRTWALSHPDLAFEVQDGV
Ga0310907_100498141	3300031847	Soil	VQEVRLTPPELVDDFVAVLRDAGKAVRKRGRVVLVEDETDAEPEQRLELVFFLRTWALSHPELAFEVRDAI
Ga0307406_101662302	3300031901	Rhizosphere	VPQEVRLTPPELVDDFVAVLRNAGKAVRKRGRVVVVEDEADGEPEQRLELVFFLRTWALSHPDLAFEVQDGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103860

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences