NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F103776

Metagenome / Metatranscriptome Family F103776

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F103776
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 145 residues
Representative Sequence MESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRAGELTLTSSASLGSMVGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLH
Number of Associated Samples 87
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 66.67 %
% of genes near scaffold ends (potentially truncated) 38.61 %
% of genes from short scaffolds (< 2000 bps) 41.58 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (96.040 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(12.871 % of family members)
Environment Ontology (ENVO) Unclassified
(36.634 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(59.406 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188.190.192.194.196.198.200.202.204.206.208.210.212.214.216.218.220.222.224.226.228.230.232.234
1C688J35102_1193718951
2Ga0066680_106337511
3Ga0066688_105614161
4Ga0070658_110668221
5Ga0070658_111674461
6Ga0070683_1011592531
7Ga0070682_1013299291
8Ga0070671_1016965861
9Ga0070709_114596712
10Ga0070713_1024028311
11Ga0070710_113776311
12Ga0070685_115046401
13Ga0070684_1010322941
14Ga0070693_1010663311
15Ga0068857_1015529741
16Ga0068856_1022809741
17Ga0068852_1019060371
18Ga0068859_1018769882
19Ga0070717_105311451
20Ga0070717_113241841
21Ga0070716_1005251761
22Ga0070716_1013719661
23Ga0070712_1014722171
24Ga0097621_1008281201
25Ga0079222_107660241
26Ga0079222_109253662
27Ga0079222_110174122
28Ga0079222_112735371
29Ga0079220_106658601
30Ga0075434_1023331731
31Ga0075424_1013799202
32Ga0079219_100932523
33Ga0105251_103222661
34Ga0105251_106493781
35Ga0105247_109633971
36Ga0105243_114243951
37Ga0105237_123511271
38Ga0105238_114109551
39Ga0134070_103441581
40Ga0134080_102820832
41Ga0134063_106117571
42Ga0134062_105002381
43Ga0105239_116577761
44Ga0105239_128325671
45Ga0134126_112228351
46Ga0134124_109677721
47Ga0157293_101207621
48Ga0157299_101208911
49Ga0157286_103424901
50Ga0157308_102574261
51Ga0164301_105479042
52Ga0164301_111818001
53Ga0134087_108082931
54Ga0164309_112933471
55Ga0164308_113728761
56Ga0164308_123001721
57Ga0164306_119479431
58Ga0164305_112112091
59Ga0164305_118472661
60Ga0157371_107433971
61Ga0157370_107782841
62Ga0157369_113652031
63Ga0157374_118328791
64Ga0157378_122879621
65Ga0157375_123641461
66Ga0163163_104969321
67Ga0182000_106023511
68Ga0182008_109533931
69Ga0157377_111154981
70Ga0157377_115649871
71Ga0173483_104990531
72Ga0134072_103460862
73Ga0066655_110574202
74Ga0066667_118742061
75Ga0066662_104347151
76Ga0206353_117713081
77Ga0207656_103584201
78Ga0207710_101225072
79Ga0207685_103736421
80Ga0207699_113912641
81Ga0207705_109968051
82Ga0207654_110172161
83Ga0207663_109103462
84Ga0207664_107020592
85Ga0207664_118298891
86Ga0207644_113064892
87Ga0207690_105879881
88Ga0207665_102879022
89Ga0207711_108704851
90Ga0207689_103336451
91Ga0207661_102314491
92Ga0207679_106491902
93Ga0207702_119498761
94Ga0207641_102635853
95Ga0209073_104606281
96Ga0247826_113820081
97Ga0308175_1029066781
98Ga0308175_1032346001
99Ga0308174_114965421
100Ga0308176_121202721
101Ga0308173_115234971
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.93%    β-sheet: 8.33%    Coil/Unstructured: 57.74%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

20406080100120140MESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRAGELTLTSSASLGSMVGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLHSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
4.0%96.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Soil
Soil
Terrestrial Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Soil
Grasslands Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Agricultural Soil
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
12.9%5.9%6.9%3.0%5.9%12.9%4.0%5.0%5.0%5.0%3.0%5.0%5.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J35102_11937189513300002568SoilMESILSDLPPLPRRRIMLPLSTLAEVARDVCEGYDPPAKGRPYAKAHPLWRELPSHLHALMNAIVSVCRGRVGELTLTRCTSLGRMIGRSARTVRRQLAQVAEHGLIVTGQTRGGVRWVALTTAAVMPTKWRP
Ga0066680_1063375113300005174SoilMESILTDLPPLPRRRITLPLSTLAEVARDVCDGYEPPARRRAYAKAHPLWRELPSHLHALMNALVSVCRGRAGELTLTRCTSLGRLIGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMPSRWRPPEPLRLHLAARACRTPAAAAKLARAEAYLRDALLAEATM
Ga0066688_1056141613300005178SoilMESILPDLPPLPRRKITLPLSTLAEVARDVCDGYDPPAKRRAYAKAHPLWRELPAHLHALMNALVSVCRGRVGALTLTRCTSLGSMVGRSARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRAAVLPSRWRPPEPLRLHLAARAC
Ga0070658_1106682213300005327Corn RhizosphereMESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPARSCAYAKAHPLWRELPSHLHALMNALVSVCRGRAGALTLTSSTSLGSMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRTPAAAVKLARAEACLRD
Ga0070658_1116744613300005327Corn RhizosphereMESTFTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPAHLHALMNALVCVCRGRAGELTLTSSTSLGKMVGRSARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRA
Ga0070683_10115925313300005329Corn RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGHDPPAKRRAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGGMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMP
Ga0070682_10132992913300005337Corn RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRAGELTLTSSASLGSMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALT
Ga0070671_10169658613300005355Switchgrass RhizosphereGVRARTLHMESILPDLPPLPRRKITIPLSTLAEVARDVCDGYDPPARGRAYAKAHPLWRELPSHLHALMNALVSVCRGRAGALTLTSSASLGSMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLPSRRLPPEPLRLHLAARACRSPAAVTKLARAEACLRDALLAEATVTGRAPP
Ga0070709_1145967123300005434Corn, Switchgrass And Miscanthus RhizosphereMESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTSSASLGSMIGRSARTVRRQLALIAEHGLIVT
Ga0070713_10240283113300005436Corn, Switchgrass And Miscanthus RhizosphereITLPLSTLAEVARDVCDGYDPPPRRQAYAKAHPLWRELPSHLHALMNALVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEHGLIVTGQTRGGVRWVALTKAAVMPTKWRPPEPLRLHLAARACRTPAALAKVAKAEAYFRDALLAEATMTGRAPPAVVADT
Ga0070710_1137763113300005437Corn, Switchgrass And Miscanthus RhizosphereMESIPTDLPPLPRRKITLPLSTLAEVAREVCDGYDPPRRGHAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRAAVLRSRWRPPEPLRLHLAARACRTPAAAVK
Ga0070685_1150464013300005466Switchgrass RhizosphereRMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPPRHCTYAKAHPLWRGLPAHLHALMNAIVSVCRGRAGELTLTRCTSLGRMVGRTARTVRRQLAQIAEHGLVVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLHLAARACRSPAAATKVARAEACLRDALLAEATV
Ga0070684_10103229413300005535Corn RhizosphereLVCEGYAPPAKGRPYAKAHPLWDDAPNHTHALMALLVSVCRGRVGEVTLTRCKSLGKQIGRCSRTVVRQLAILADVGLIVSGHTRGGVRWVALTRAAVIQSKWRPPERLRLYLAADACRTPAAAAKLARAEAYLRDALLAEATMTGKMPLAVVAGHGRPAFIDSLRNVP*
Ga0070693_10106633113300005547Corn, Switchgrass And Miscanthus RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPAKRRAYAKAHPLWRGLPAHLHALMNALVSVCRGRPGALTLTGSASLGRLVGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRTPAAAVKLARAEAYLRDALLAEATVTGRAPP
Ga0068857_10155297413300005577Corn RhizosphereMESILPDLPPLPRRRITLPLSALAEVARDVCDGYDPPGRGCAYAKAHPLWRELPSHLHALMNALVSVCRGRPGALTLTSSTSLGRLVGRSARTVRRQLALIAE
Ga0068856_10228097413300005614Corn RhizosphereMESILTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARAC
Ga0068852_10190603713300005616Corn RhizosphereMESTFTDLPPLPRRKITLPLSTLAEVARDVCDGFDPPARRQAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLVVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRSPAAAVK
Ga0068859_10187698823300005617Switchgrass RhizosphereSTLAEVARDVCDGYDPPARGRAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRTPAAAVKLARAEACLRDALLAEATVTGRKPPPTVADTRGRLLA*
Ga0070717_1053114513300006028Corn, Switchgrass And Miscanthus RhizosphereMEFILPDLPLLPRRKITLPLSTLAEVARDVCDGYDPPPRRHAYAKAHPLWDGLPAHLHALMNALVSVCRGRAGELTLTRCTSLGKMVGRTARTVRRQLALIAGH
Ga0070717_1132418413300006028Corn, Switchgrass And Miscanthus RhizosphereMESILTDLPPLPRRKITLPLSTLAEVAREVCDGHEPPARRQAYAKAHPLWRELPAHLHALMNALVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLRSRWRPPEPLRLHLAARACRTPAAAVKLARAEACLRDALLAEATVTGRAPP
Ga0070716_10052517613300006173Corn, Switchgrass And Miscanthus RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRGLPAHLHALMNALVSVCRGRPGALTLTSSASLGGMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMPSQWRPPEPLRLHLAARACRSPAAVTKLARAEACLRDALLA
Ga0070716_10137196613300006173Corn, Switchgrass And Miscanthus RhizosphereTLAEVAREVCDGHEPPAKGRAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLVVTGQTRGGVRWVALTRAAVLRSRWRPPEPLRLHLAARACRSPAAAVKLARAEAYLRDTLLAEATVTGRVPPLAVADTAGRLLA*
Ga0070712_10147221713300006175Corn, Switchgrass And Miscanthus RhizosphereMESILTDLPPLPRRKITLPLSTLAEVAREVCDGYDPPAKRQAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGRLIGRSARTVRRQL
Ga0097621_10082812013300006237Miscanthus RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRAAVLRSRWRPPEPLRLHLAARACRSPAAATKLARAEAYLRDALLAE
Ga0079222_1076602413300006755Agricultural SoilMSTLDTLFLRDDALPPLPRRRITLPLSTLAEVARDVCDGYDPPAKRRAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTSSASLGRLVGRSARTVRRQLALIAAADLIVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLHLAARACRSPAAVT
Ga0079222_1092536623300006755Agricultural SoilMESILLPPLPRHRITLPLSTLAEVVHDVCAGYDPPARGRAYAKAHPLWHELPAHLHALMNTIVSVCRGRAGGLTLTSSTSLGRLIGRSARTVRRQL
Ga0079222_1101741223300006755Agricultural SoilMESILPDLPPLPRRRITLPLSTLAEVARDVCAGYDPPPRRQAYAKAHPLWRELPSHLHALMNALVCVCRGRAGALTLTSSASLGRLVGRSTRTVRRQLAQIAEHGLIVTGQTRGGARWVALTRAAVLPSRWRPPEPLRLLLAARACRSPAATAKLARAEACLRDALLAETTMAGRAPPLSVAVT
Ga0079222_1127353713300006755Agricultural SoilMESVLSDLPPLPRRRITLPLSALAEVARDVCDGYDPPARSCAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTGSASLGSMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTAAAVM
Ga0079220_1066586013300006806Agricultural SoilMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPARGRAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTSSASLGRLVGRSARTVRRQLAQIAAAELIVTGQTRGGVRWVALTRAAVMPSRWRPPEPLRLHLAARACRSPAAVTKVARAEAYLRDALLTEATVT
Ga0075434_10233317313300006871Populus RhizosphereRDVCDGYDPPPRRQAYAKAHPLWRGLPAHLHALMNALVSVCRGRAGALTLTRCTSLGSMVGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLHLAARACRTPTAVTRVARAEACLRDALLAEATVTGRAPPVLVAVTAGRLLA*
Ga0075424_10137992023300006904Populus RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPARSCAYAKAHPLWRELPSHLHALMNALVCVCRGRAGALTLTSSASLGSMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTQAAVMPTKWRPPEPLRLHLAARACRSPAAVTKLARAEACLRDALLAEATMTGRAPPPAVADTRVRLLA*
Ga0079219_1009325233300006954Agricultural SoilMESILLDLPPLPRRRITLPLSALAEVARDVCDGYDPPGRGQAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTSSASLGGMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLHLAARACRSPAALTKLARAEACLRDALLAEAT
Ga0105251_1032226613300009011Switchgrass RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGFDPPARRQAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGKMVGRTARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRAAVMPSQWRPPEPLRLHLAARAC
Ga0105251_1064937813300009011Switchgrass RhizosphereMESIPTDLPPLPRRKITLPLSTLAEVARDVCDGHDPPAKRRAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGGMVGRSARTV
Ga0105247_1096339713300009101Switchgrass RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPSHLHALMNALVSVCRGRAGALTLTSSASLGSMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLRGRWRLPEPLRLHLA
Ga0105243_1142439513300009148Miscanthus RhizosphereMESIPTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRVRPGALTLTSSTSLGSMVGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVMPTRWRPPEPLRLLLAARACRSPAAAAKLARAE
Ga0105237_1235112713300009545Corn RhizosphereMESTFTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPPRHCAYAKAHPLWRGLPSHLHALMNALVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEHGLLVTGQTRGG
Ga0105238_1141095513300009551Corn RhizosphereMESALSDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVCVCRGRAGALTLTSSASLGRLVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTGAAVLRSKWRPPEPLRLHLAARACRTPAAAAKLARAEAYLRDALLAEA
Ga0134070_1034415813300010301Grasslands SoilMESTLTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPARSCAYAKAHPLWRGLPSHLHALMNALVCVCRGRAGELTLTRCTSLSKMIGRSARTVRRQLAQIAEHGLIVTGQTRGGV
Ga0134080_1028208323300010333Grasslands SoilEVARDVCDGYDPPARRQAYAKAHPLWRELPAHLHALMNALVSVCRGRVGALTLTRCTSLGSMVGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVMPSRWRPPEPLRLHLAARACRSPAAVTKVGRAEACLRDALLAEATVTGRAPPAVVAVTGDRLLA*
Ga0134063_1061175713300010335Grasslands SoilMESIPDLPLLPRRRITLPLSTLAEVAREVCDGHEPPARGRAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGSMIGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVVPSRWRPPEPLRLHLAARACRTPAAAVKLARAEACLRDALLA
Ga0134062_1050023813300010337Grasslands SoilMLGVRARTSRVESTLTDLPPLPRRKITIPLSTLAEVARDVCDGYDPPVRGRAYAKAHPLWRELPAHLHALMNAIVSVCRGQVGALTLTRCTSLGRMVGRTARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRSPAATARVARAEAYLRDALLAEATV
Ga0105239_1165777613300010375Corn RhizosphereMESTLPDLPPLPRRKITLPLSTLAEVAREVCDGYDPPARRQAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGELTLTRCTSLGRMVGRTARTVRRQLAQIAAADLIVTGQTRGGVRWVALTAVAVMPTRWRPPEPLR
Ga0105239_1283256713300010375Corn RhizosphereESALLDLPPLPRRRITLPLSTLAEVAREVCDGYDPPGRGCAYAKAHPLWRGLPSHLHALMNALVSVCRGRPGELTLTRTESLGRLIGRSARTVRRQLAQIAEHGLVVTGQTRGGVRWVALTRAAVMPSRWRPPEPLRLHLAARTCRTPAAVAKVGRAEAYLRDALLVEATVTGRAPPLAVAVTAGRLL
Ga0134126_1122283513300010396Terrestrial SoilMESILTDLPPLPRRRITLPLSTLAEVARDVCDGHEPPAERRAYAKAHPLWRELPAHLHALMNALTSVCRGQVSRLTLTSSTSLGRLVGRSARTVRRQL
Ga0134124_1096777213300010397Terrestrial SoilMESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRAGELTLTSSASLGSMVGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLH
Ga0157293_1012076213300012898SoilMESIPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGSMVGRSARTVRRQLALIAEHDLIVTGQTRGGVRWVALTRAAVLPSRWRPPEPLRLHLAARACRSPAAVTRVARAEACLRD
Ga0157299_1012089113300012899SoilVLGVRARTLRMESILPDLPPLPRRKITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRGLPAHLHALMNAVVSVCRGRPGELTLTSSTSLGRLIGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLA
Ga0157286_1034249013300012908SoilMESILPDLPPLPRRKITLPLSTLAEVARDVCDGYDPPPRRQAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTSSTSLGRLIDRSARTVRRQLALIAEHGLIITGQTRGGVRWVALTRAAVMPAKWRPPEPLRLH
Ga0157308_1025742613300012910SoilMESIPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPPRRQAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGALTLTSSTSLGRLVGRSARTVRRQLAQVAEHGLIVTGQTRGG
Ga0164301_1054790423300012960SoilMESILTDLPPLPRRKITLPLSTLAEVAREVCDGHEPPARRRAYAKAHPLWRELPAHLHALMNALVCVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEHGLIVTGQTRGGVRWVALT
Ga0164301_1118180013300012960SoilMESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPVRRQAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRTPAAAAK
Ga0134087_1080829313300012977Grasslands SoilMESILTDLPPLPRRRITLPLSTLAEVARDVCEGYDPPAKSRAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTRCTSLGKMIGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMPTKWRPPERLRLHLALAGEL
Ga0164309_1129334713300012984SoilMESILTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPVRRQAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGSMVGRSARTVRRQLAQIAEHGLIVT
Ga0164308_1137287613300012985SoilMESIPTDLPPLPRRKIKLPLSTLAAVDRDVCDGSDPPHRGHAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTA
Ga0164308_1230017213300012985SoilTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRAAVMPSRWRPPEPLRLHLAARACRSPAAAVRLARAEACLRDALLAEAT
Ga0164306_1194794313300012988SoilMESILTDLPPLPRRKITLPLSTLAEVARDVCDGFDPPVRRQAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLRSRWQPPEPLRLHL
Ga0164305_1121120913300012989SoilMESTFTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPVRRQAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLVVTGQTRGGVRW
Ga0164305_1184726613300012989SoilMESALLDLPPLPRRRTTLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRGLPSHLHALMNALVCVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLVVTGQTRGGVRW
Ga0157371_1074339713300013102Corn RhizosphereMESILTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPSHLHALMNALVSVCRGRAGALTLTSSASLGSMIGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMPSRWRPPEPLRLHLAARACRSPAAVAKVGRAEAYLRDALLVEATMTGRAPPPGVADTRVRLLERVTDQGQVSGAPEHEAGGGDG
Ga0157370_1077828413300013104Corn RhizosphereMESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPARSCAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTGSASLGSMIGRSARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRAAVMPSRWRPPEPLRLHLAARACRSPAAAAKLARAEACLRDALLAEATMT
Ga0157369_1136520313300013105Corn RhizosphereMESILTDLPPLPRRKITIPLSTLAEVAREVCDGYDPPRRGHAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEYGLIVTGQTRGGVRWVALTRAAVLPSRWRPPEPLRLHLAAQAC
Ga0157374_1183287913300013296Miscanthus RhizosphereMESILTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALTSVCRGRVGELPLTSSASLGRLVGRSARTVRRQLALIAGHGLIVTGQTRGGVRWVALTGAAVLRSKWR
Ga0157378_1228796213300013297Miscanthus RhizosphereVSGVRARTLRMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRGLPAHLHALMNALVSVCRGRVGELTLTRCTSLGRMIGRSARTVRRQLAQIAAADLITTG
Ga0157375_1236414613300013308Miscanthus RhizosphereMLRMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPPRSRAYAKAHPLWRGLPAHLHALMNALVSVCRGRPGALTLTSSASLGSMIGRSARTVRRQLAQIAAADLIVTGQTRGGVRWVALTRAAVMPSQWRPPEPLRLHLAARAC
Ga0163163_1049693213300014325Switchgrass RhizosphereMESALLDLPPLPRRRITLPLSTLTEVARDVCDGYDPPARSCAYAKAHPLWRELPSHLHALMNALVSVCRGRAGALTLTSSASLGSMVGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVMPSRWRPPEPLRLHLAA
Ga0182000_1060235113300014487SoilMESTLPDLSPLPRRKITLPLSTLAEVARDVCDGYDPPAKGRAYAKAHPLWRELPAHLHALMNALVSVCRGRVGGLTLTSSASLGSMIGRSARTVRRQLAQIAGHGLIVTGQTRGGVRWVALTAAA
Ga0182008_1095339313300014497RhizosphereMESILLDLPPLSRRRITLPLSTLADVARDVCAGYDPPGRGCAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTSSTSLGRLVGRSARTVRRQLAQIAEHSLIVTGRTRGGVRWVALTAAAVMPSRWRPPEPL
Ga0157377_1111549813300014745Miscanthus RhizosphereMESILTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPARGQAYAKAHPLWRGLPAHLHALMNALVSVCRGRPGALTLTSSASLGRLVGRSARTVRRQLAQIAAADLIVTGQTRGGVRWVALTRAAVMPTRWRPPEPLRLHLAARACRSPAALTKLARAEACLRDALLAEATVTGRAPPP
Ga0157377_1156498713300014745Miscanthus RhizosphereMESIPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRGLPAHLHALMNALVSVCRGRPGALTLTSSASLGSMVGRSARTVRRQLAQIAAADLIVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLHLAARACRSPAAVT
Ga0173483_1049905313300015077SoilMESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALTSVCRGQVSRLTLTSSASLGSMVGRSARTVRRQLALIAEHGL
Ga0134072_1034608623300015357Grasslands SoilMESILTDLPPLPRRRITLPLSALAEVARDVCDGYDPPVRGRAYAKAHPLWRELPAHLHALMNALVCVCRGRVGELTLTRCTGLGNMIGRSARTVRRQLALI
Ga0066655_1105742023300018431Grasslands SoilMESILTDLPPLPRRRITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGELTLTSSTSLGRMIGRSARTVRRQLALIAEHGLVVTGQTRCGVRWVALTKAAVIQTKCRR
Ga0066667_1187420613300018433Grasslands SoilMESTFTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTSSASLGSMIGRSARTVRRQLAQIAAAELIVTGQTRGGVRWVALTRAAVMQSKWRPPEPLRLHLAA
Ga0066662_1043471513300018468Grasslands SoilQAVAHVPLPGVRARTSRMESILTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPARGRAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAGHGLIVTGQTRGGVRWVALPKAAVLRSKWRPPEPLRLHLAARACRTPAAAVKLARAEAYLRDALLVEATMSCRAPPLSVAVTRGRLLA
Ga0206353_1177130813300020082Corn, Switchgrass And Miscanthus RhizosphereMESILLDLPPLPRRKITIPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWQELPAHLHALMNALVSVCRGRPGALTLTSSTSLGRLVGRSARTVRRQLALIAAAELIVTGQTRGGVRWVALTRAAVIPTKWRPPEPL
Ga0207656_1035842013300025321Corn RhizosphereMESTFTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPAHLHALMNTLVSVCRGRGGALTLTSSASLSRLVGRTARTVRRQLAQIAGHGLIVTGQTRGGVRWVALTRAAVLPSRWRPPEPLRLHL
Ga0207710_1012250723300025900Switchgrass RhizosphereMESTFTDLPPLPRRKITLPLSTLAEVAREVCDGYDPPRRGHAYAKAHPLWRELPAHLHALMNALVCVCRGRAGALTLTSSASLGRLVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTKAAVMPTKWRPPEPLRLHLAARACRT
Ga0207685_1037364213300025905Corn, Switchgrass And Miscanthus RhizosphereMESIPTDLPPLPRRKITIPLSTLAEVARDVCDGYDPPPRRHAYAKAHPLWRELPSHLHALMNALVSVCRGRAGALTLTSSASLGRLIGRSARTVRRQLAQIAEHGL
Ga0207699_1139126413300025906Corn, Switchgrass And Miscanthus RhizosphereSILLDLPPLPRRRITLPLSALAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGSMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRTPAAAVKLARAEACLRDALLAEATMAG
Ga0207705_1099680513300025909Corn RhizosphereMESTFTDLPPLPRRKITIPLSTLAEVARDVCDGYDPPARGRAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTSSASLGSMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLRSRWRPPEPLRLHLAARACRSPAAAVKLARAEACLRDALLAEAT
Ga0207654_1101721613300025911Corn RhizosphereMESILPDLPPLPRRRITLPLSALAEVARDVCDGYDPPAKRQAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGSMVGRSARTVRRQLALIAAADLIVTGQTRGGVRWVALTRAAVLPSRWRPPEPLRLHLAARACRTPAAVTRVARAEACLRDALLAEAT
Ga0207663_1091034623300025916Corn, Switchgrass And Miscanthus RhizosphereMESVPYDLPPLPRRKITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPAHLHALMNALVCVCRGRAGELTLTRCTSLGEMVGRTARTVRRQLALIAEHGLIV
Ga0207664_1070205923300025929Agricultural SoilMESILTDLPPLPRRKITLPLSTLAEVAREVCDGHEPPARRQAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLQ
Ga0207664_1182988913300025929Agricultural SoilMEFILPDLPLLPRRKITLPLSTLAEVARDVCDGYDPPPRRHAYAKAHPLWDGLPAHLHALMNALVSVCRGRAGELTLTRCTSLGRMVGRTARTVRRQLALIAGHGLIVTGQTRCGVRWVALTRAAVMPSR
Ga0207644_1130648923300025931Switchgrass RhizosphereMESILTDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRGLPAHLHALMNALVSVCRGRPGALTLTSSASLGRLVGRSARTVRRQLAQIAGHGLIVTGQTRGGVRWVALTRAAVLPSRRLPPEPLRLHLAAR
Ga0207690_1058798813300025932Corn RhizosphereMESILTDLPPLPRRKITLPLSTLAEVAREVCDGYDPPRRGHAYAKAHPLWRELPAHLHALMNALVCVCRGRAGELTLTSNTSLGRMVGRTARTVRRQLAQIAGHGLIVTGQTRGGVRWVALTRDGMIKALRERGPDVAVIEVMTV
Ga0207665_1028790223300025939Corn, Switchgrass And Miscanthus RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGGMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMPSQWRPPEPLRLHLAARACRSPAAVTKLARAEACLRDALLAEATMAGRAPPPTVADTRGRLLA
Ga0207711_1087048513300025941Switchgrass RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPPRRQAYAKAHPLWRGLPAHLHALMNAIVSVCRGQVGRLTLTSSASLGSMIGRSARTVRRQLAQIAAADLIVTGQTRGGVRWVALTRAAVMQSKWRPPEPLRLHLAARACRSPAAVTRV
Ga0207689_1033364513300025942Miscanthus RhizosphereMESTFTDLPPLPRRKITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGELTLTRCTSLGGMVGRTARTVRRQLALIAAADLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRSPAAVTKLARAEACLRDALLAEATVTGRAPPPKVADTRGRLLA
Ga0207661_1023144913300025944Corn RhizosphereMESILPDLPPLPRRRITLPLSTLAEVARDVCDGHDPPAKRRAYAKAHPLWRELPAHLHALMNALVSVCRGRPGALTLTSSASLGGMVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMPTKWRPPEPLRLHLAARACRSPA
Ga0207679_1064919023300025945Corn RhizosphereMESILPDLPPLPRRRITLPLSALAEVARDVCDGYDPPAERRAYAKAHPLWRELPAHLHALMNAIVSVCRGRPGALTLTRCTSLGSMVGRSARTVRRQLALIA
Ga0207702_1194987613300026078Corn RhizosphereMESILPDLPPLPRRRITIPLSTLAEVAREVCDGFDPPAEGRAYAKAHPLWRELPAHLHALMNALVSVCRGRAGGLTLTRCTSLGRMVGRTARTVRRQLALIAGHGLIVTGQTRGGVRWVALTRAAVLQSRWRPPEPLRLHLAARACRSPAAAVKL
Ga0207641_1026358533300026088Switchgrass RhizosphereMESTLPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPSHLHALMNALVSVCRGRPGALTLTSSTSLGRLVGRSARTVRRQLAQIAGHGLIVTGQTRGGVRWVALTRAAVLRSRWRPPEPLRLH
Ga0209073_1046062813300027765Agricultural SoilPLSALAEVARDVCDGYDPPGRGQAYAKAHPLWRELPAHLHALMNALTSVCRGRVGALTLTSSTSLGSMIGRSARTVRRQLAQIAEHGLIVTGQTRGGVRWVALTRAAVLPSKWRPPEPLRLHLAARACRSPAAATKLARAEACLRDALLAEATVTGRAPPPMVADTRGRLLA
Ga0247826_1138200813300030336SoilMESTLTDLPPLPRRKITIPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRAGELTLTRCTSLGRLIGRTARTVRRQLALIAEHGLVVTGQTRGGVRWVALTRAA
Ga0308175_10290667813300031938SoilMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGHAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTSSASLGRLIGRSARTVRRQLALIAEYGLVVTGQTRGGVRWVA
Ga0308175_10323460013300031938SoilMESILPDLPPLPRRKITLPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPAHLHALMNAIVSVCRGRAGALTLTRCTSLGRLIGR
Ga0308174_1149654213300031939SoilMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGCAYAKAHPLWRELPAHLHALMNALVSVCRGRAGALTLTSSASLGSMIGRSARTVRRQLAQIAERGLIVTGQTRGGVRWVALTRAAVLPSKWRPPEPLRLHLAARACRSPAAATKVARAEA
Ga0308176_1212027213300031996SoilMESILPDLPPLPRRRITLPLSTLAEVARDVCDGYDPPGRGHAYAKAHPLWRELPSHLHALMNALVCVCRGRVGELTLTSSANLGRLVGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVLPSRW
Ga0308173_1152349713300032074SoilMESILTDLPPLPRRKITIPLSTLAEVARDVCDGYDPPRRGHAYAKAHPLWRELPSHLHALMNAIVSVCRGRAGALTLTSSTSLGKMIGRSARTVRRQLALIAEHGLIVTGQTRGGVRWVALTRAAVMPTK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.