Metagenome / Metatranscriptome Family F103736

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103736
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	57 residues
Representative Sequence	MSEQSGSRREPDDAMARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADKLQTE
Number of Associated Samples	67
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.19 %
% of genes near scaffold ends (potentially truncated)	24.75 %
% of genes from short scaffolds (< 2000 bps)	90.10 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.475 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.752 % of family members)
Environment Ontology (ENVO)	Unclassified (31.683 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.366 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.37% β-sheet: 0.00% Coil/Unstructured: 96.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01548	DEDD_Tnp_IS110	1.98
PF01425	Amidase	1.98
PF03007	WES_acyltransf	1.98
PF11298	DUF3099	0.99
PF03959	FSH1	0.99
PF02617	ClpS	0.99
PF07311	Dodecin	0.99
PF07883	Cupin_2	0.99
PF04239	DUF421	0.99
PF13683	rve_3	0.99
PF11774	Lsr2	0.99
PF08592	Anthrone_oxy	0.99
PF13229	Beta_helix	0.99
PF13546	DDE_5	0.99
PF07332	Phage_holin_3_6	0.99
PF03992	ABM	0.99
PF00872	Transposase_mut	0.99
PF06974	WS_DGAT_C	0.99
PF01740	STAS	0.99
PF13701	DDE_Tnp_1_4	0.99
PF03364	Polyketide_cyc	0.99
PF13359	DDE_Tnp_4	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.98
COG4908	Uncharacterized conserved protein, contains a NRPS condensation (elongation) domain	General function prediction only [R]	1.98
COG0400	Predicted esterase	General function prediction only [R]	0.99
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG2323	Uncharacterized membrane protein YcaP, DUF421 family	Function unknown [S]	0.99
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.99
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
All Organisms	root	All Organisms	47.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
cellular organisms	root	All Organisms → cellular organisms	47.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.61 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37.62 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26.73 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	8.91 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.97 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.99 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.99 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.99 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.99 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	5.94 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.97 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	1.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %
Demequinaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Demequinaceae	0.99 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.99 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.99 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	3.96 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.98 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.99 %
Demequina	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Demequinaceae → Demequina	0.99 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.98 %
Micromonospora foliorum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora foliorum	0.99 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.99 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.99 %
Pseudonocardia xinjiangensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia xinjiangensis	0.99 %
Streptomyces tuirus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tuirus	0.99 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.99 %
Demequina	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Demequinaceae → Demequina	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.98 %
Streptomyces sp. AS02	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. AS02	0.99 %
Pseudonocardia sp. H11425	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. H11425	0.99 %
Micromonospora foliorum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora foliorum	0.99 %
Pseudonocardia xinjiangensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia xinjiangensis	0.99 %
Streptomyces tuirus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tuirus	0.99 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.99 %
Demequina	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Demequinaceae → Demequina	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_105629078	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1442	Open in IMG/M
3300002568\|C688J35102_119683042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	748	Open in IMG/M
3300002568\|C688J35102_120324909	Not Available	991	Open in IMG/M
3300004016\|Ga0058689_10056685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. AS02	740	Open in IMG/M
3300004153\|Ga0063455_100976556	Not Available	610	Open in IMG/M
3300005328\|Ga0070676_10107454	Not Available	1733	Open in IMG/M
3300005328\|Ga0070676_11530123	Not Available	514	Open in IMG/M
3300005331\|Ga0070670_100766987	Not Available	870	Open in IMG/M
3300005435\|Ga0070714_101115382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	769	Open in IMG/M
3300005530\|Ga0070679_101892153	Not Available	545	Open in IMG/M
3300005535\|Ga0070684_100359170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1341	Open in IMG/M
3300005535\|Ga0070684_100434219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1213	Open in IMG/M
3300005562\|Ga0058697_10314101	Not Available	751	Open in IMG/M
3300005577\|Ga0068857_100029859	All Organisms → cellular organisms → Bacteria	4810	Open in IMG/M
3300005578\|Ga0068854_100019613	All Organisms → cellular organisms → Bacteria	4559	Open in IMG/M
3300005616\|Ga0068852_101900998	Not Available	617	Open in IMG/M
3300005617\|Ga0068859_101366593	Not Available	781	Open in IMG/M
3300005842\|Ga0068858_100316643	Not Available	1490	Open in IMG/M
3300006028\|Ga0070717_10267972	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300006028\|Ga0070717_10428149	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300006173\|Ga0070716_101548743	Not Available	543	Open in IMG/M
3300007790\|Ga0105679_10179747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1967	Open in IMG/M
3300009789\|Ga0126307_10134545	Not Available	1974	Open in IMG/M
3300009789\|Ga0126307_10647477	Not Available	853	Open in IMG/M
3300009789\|Ga0126307_11457592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300009840\|Ga0126313_10175006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1635	Open in IMG/M
3300010042\|Ga0126314_11486197	Not Available	509	Open in IMG/M
3300012212\|Ga0150985_100144879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1693	Open in IMG/M
3300012212\|Ga0150985_101828775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora foliorum	1711	Open in IMG/M
3300012212\|Ga0150985_101872595	Not Available	556	Open in IMG/M
3300012212\|Ga0150985_103395494	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	581	Open in IMG/M
3300012212\|Ga0150985_109007985	Not Available	592	Open in IMG/M
3300012212\|Ga0150985_111986963	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300012212\|Ga0150985_112187845	Not Available	772	Open in IMG/M
3300012212\|Ga0150985_114492230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Demequinaceae → Demequina	637	Open in IMG/M
3300012212\|Ga0150985_115045926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. H11425	965	Open in IMG/M
3300012212\|Ga0150985_118182711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1075	Open in IMG/M
3300012212\|Ga0150985_119045261	Not Available	2020	Open in IMG/M
3300012212\|Ga0150985_120776064	Not Available	590	Open in IMG/M
3300012212\|Ga0150985_121499470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2311	Open in IMG/M
3300012469\|Ga0150984_102140146	Not Available	510	Open in IMG/M
3300012469\|Ga0150984_106002203	Not Available	530	Open in IMG/M
3300012469\|Ga0150984_107078530	Not Available	597	Open in IMG/M
3300012469\|Ga0150984_117025105	Not Available	1141	Open in IMG/M
3300012469\|Ga0150984_122223525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1071	Open in IMG/M
3300012961\|Ga0164302_10354737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	982	Open in IMG/M
3300012989\|Ga0164305_11969517	Not Available	532	Open in IMG/M
3300013306\|Ga0163162_10068387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3603	Open in IMG/M
3300014325\|Ga0163163_11161639	Not Available	835	Open in IMG/M
3300014326\|Ga0157380_10097568	Not Available	2439	Open in IMG/M
3300014487\|Ga0182000_10056862	Not Available	1191	Open in IMG/M
3300015200\|Ga0173480_11210381	Not Available	511	Open in IMG/M
3300017965\|Ga0190266_10107140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1164	Open in IMG/M
3300017965\|Ga0190266_10484629	Not Available	715	Open in IMG/M
3300017965\|Ga0190266_10513862	Not Available	701	Open in IMG/M
3300018422\|Ga0190265_10005713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8826	Open in IMG/M
3300018422\|Ga0190265_10581154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1238	Open in IMG/M
3300018422\|Ga0190265_11625092	Not Available	757	Open in IMG/M
3300018432\|Ga0190275_10052323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	3415	Open in IMG/M
3300018432\|Ga0190275_10264731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1666	Open in IMG/M
3300018432\|Ga0190275_11885771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	676	Open in IMG/M
3300018465\|Ga0190269_10099368	Not Available	1423	Open in IMG/M
3300018465\|Ga0190269_10225247	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300018466\|Ga0190268_10046617	Not Available	1685	Open in IMG/M
3300018469\|Ga0190270_11184858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	801	Open in IMG/M
3300018476\|Ga0190274_10161048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1912	Open in IMG/M
3300018481\|Ga0190271_12978885	Not Available	568	Open in IMG/M
3300018481\|Ga0190271_13683012	Not Available	513	Open in IMG/M
3300018920\|Ga0190273_10296435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1078	Open in IMG/M
3300019249\|Ga0184648_1398121	Not Available	505	Open in IMG/M
3300019377\|Ga0190264_11462124	Not Available	591	Open in IMG/M
3300020069\|Ga0197907_11162198	Not Available	653	Open in IMG/M
3300021384\|Ga0213876_10085008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia xinjiangensis	1674	Open in IMG/M
3300025900\|Ga0207710_10029654	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300025901\|Ga0207688_10004836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7336	Open in IMG/M
3300025901\|Ga0207688_10095210	Not Available	1714	Open in IMG/M
3300025908\|Ga0207643_10626772	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300025911\|Ga0207654_10971117	Not Available	617	Open in IMG/M
3300025924\|Ga0207694_10462355	Not Available	1060	Open in IMG/M
3300025944\|Ga0207661_10732647	Not Available	910	Open in IMG/M
3300026041\|Ga0207639_11322425	Not Available	676	Open in IMG/M
3300027809\|Ga0209574_10035754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1208	Open in IMG/M
3300028379\|Ga0268266_10471784	Not Available	1195	Open in IMG/M
3300028596\|Ga0247821_10766070	Not Available	634	Open in IMG/M
3300028704\|Ga0307321_1038514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	885	Open in IMG/M
3300028754\|Ga0307297_10289058	Not Available	590	Open in IMG/M
3300028790\|Ga0307283_10260708	Not Available	512	Open in IMG/M
3300028810\|Ga0307294_10373400	Not Available	531	Open in IMG/M
3300028812\|Ga0247825_10602655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	787	Open in IMG/M
3300028889\|Ga0247827_11212999	Not Available	524	Open in IMG/M
3300031824\|Ga0307413_11666175	Not Available	568	Open in IMG/M
3300031852\|Ga0307410_10522198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	980	Open in IMG/M
3300031852\|Ga0307410_10580516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	933	Open in IMG/M
3300031938\|Ga0308175_100245965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tuirus	1792	Open in IMG/M
3300031938\|Ga0308175_102873294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300031939\|Ga0308174_11910001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300031996\|Ga0308176_12702182	Not Available	528	Open in IMG/M
3300032002\|Ga0307416_101180679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	871	Open in IMG/M
3300032002\|Ga0307416_103470566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300032074\|Ga0308173_12188477	Not Available	522	Open in IMG/M
3300032126\|Ga0307415_101280090	Not Available	694	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.47%
Host-Associated	Host-Associated	46.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.48%
Plants	Host-Associated → Plants	46.53%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.81%
Roots	Host-Associated → Plants → Roots	1.98%
Phylloplane	Host-Associated → Plants → Phylloplane	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	12.87%
Loam	Environmental → Terrestrial → Soil → Loam	10.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.91%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Sand	Environmental → Terrestrial → Soil → Sand	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.99%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	12.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.97%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.99%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1056290781	3300000956	Soil	MARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADKLRTE*
C688J35102_1196830421	3300002568	Soil	MSQSSDTRREPDDVMARQSGAVSEDVQPVTTDEDVAETADGSLAGTIGAERTDEAEDLQA
C688J35102_1203249093	3300002568	Soil	MSEKPSSLQEPDDAMPRRSGKVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKTE*
Ga0058689_100566852	3300004016	Agave	MSEPMEPREPDDAMARQSGAVSEDVQPLTTDQDAEKTARGSLEGTAGPEGTDTTNSLKTD
Ga0063455_1009765561	3300004153	Soil	MSEESSSLRKPDDAMARQSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKTE*
Ga0070676_101074545	3300005328	Miscanthus Rhizosphere	MSEQTGSPRESDDPMARRSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP*
Ga0070676_115301231	3300005328	Miscanthus Rhizosphere	MSEPSGNRREPDDAMARQSLEVAEDVQLVTTDEDADTTAQGSREGTADPERTNPAGNPPTE*
Ga0070670_1007669873	3300005331	Switchgrass Rhizosphere	MSEPSGNRREPDDAMARQSLEVAEDVQLVTNDEDADTTAQGSREGTADPERTNPAGNPPTE*
Ga0070714_1011153821	3300005435	Agricultural Soil	RQSLEVAEDVQPVTTDGDADTTAQGSHEGTADAERTNPADKLPTE*
Ga0070679_1018921531	3300005530	Corn Rhizosphere	MSEQTGSPRESDDPMARQSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTNTADNLETVRP*
Ga0070684_1003591702	3300005535	Corn Rhizosphere	MSEQTGSPRESDDPMARQSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP*
Ga0070684_1004342192	3300005535	Corn Rhizosphere	MSEQSGSRREPDDAMARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADKLRTE*
Ga0058697_103141012	3300005562	Agave	FEQSISPRDPDDAMARQSGAVAEDVQPVTTDEKADTTAQGSLHGTAGREGTERADSLQTEPPDDDQK*
Ga0068857_1000298593	3300005577	Corn Rhizosphere	MARRSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP*
Ga0068854_1000196131	3300005578	Corn Rhizosphere	MARQSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP*
Ga0068852_1019009982	3300005616	Corn Rhizosphere	PSGNRREPDDAMARQSLEVAEDVQLVTNDEDADTTAQGSREGTADPERTNPAGNPPTE*
Ga0068859_1013665932	3300005617	Switchgrass Rhizosphere	DAMARQSLEVAEDVQLVTTDEDADTTAQGSREGTADPERTNPAGNPPTE*
Ga0068858_1003166432	3300005842	Switchgrass Rhizosphere	MSEQTGSPRESDDPMARRSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTNTADNLETVRP*
Ga0070717_102679721	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTLWRASPLEVSEDAQPVTTDEEPDKTAQGSLEGTAGPERTDTADNLETERP*
Ga0070717_104281493	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPSGNRREPDDAMARQSLEVAEDVQPVTTDGDADTTAQGSHEGTADAERTNPADKLPTE*
Ga0070716_1015487431	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MARQSLEMSEDGSAGVTTDEADKTAQGSLEGTAGPERTDTADNLETERP*
Ga0105679_101797472	3300007790	Soil	VATADEVSAGREPDDAVARQPGAVSEDAQPVTTDADAEKSAQGSAEDPAGHRRDKADDMRTE*
Ga0126307_101345455	3300009789	Serpentine Soil	MSEESSSPREPDDALARQSGAVSEDEQAVTTHEDAERTARGSLQGTAGPEGTDTSDSLETE*
Ga0126307_106474772	3300009789	Serpentine Soil	MSEESSSLQEPDDAMARQSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKAE*
Ga0126307_114575922	3300009789	Serpentine Soil	MSEESSSLREPDDAMARQSGAVSEDEQAVNPHEDAVRTAQGSLQGTAGPEGTDTADNLKT
Ga0126313_101750062	3300009840	Serpentine Soil	MARQSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKTE*
Ga0126314_114861972	3300010042	Serpentine Soil	MSEESSSLQEPDDAVTRRSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGANTADNLKTEWPR*
Ga0150985_1001448793	3300012212	Avena Fatua Rhizosphere	MARQSLEVSEDAQPITTDEQAEKTAQGSLEGTAGPERTDTADKLQTE*
Ga0150985_1018287754	3300012212	Avena Fatua Rhizosphere	MSEPSGNRREPEDAMARQSLEVAEDVQPVATDEDADKTAQGSREGTADPERTNPADKLPTE*
Ga0150985_1018725952	3300012212	Avena Fatua Rhizosphere	MARQSLEVSEDVQPVTTGEEAEKTAQGSLEGTAGPERTDTADDLQTEA*
Ga0150985_1033954941	3300012212	Avena Fatua Rhizosphere	DDAMARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADKLQTE*
Ga0150985_1090079852	3300012212	Avena Fatua Rhizosphere	MARRSLPVSEDVQPVTTDEDADNTAQGSLEGTAGPERTDTADDLQTE*
Ga0150985_1119869633	3300012212	Avena Fatua Rhizosphere	MARQSGAVSEDVQPVTTDEDVAETADGSLAGTIGAERTDEAEDLQA*
Ga0150985_1121878452	3300012212	Avena Fatua Rhizosphere	MARQSLEVSEDVQPVTTDEDADGTTQGALEGTAGPERTDTADDLQTE*
Ga0150985_1144922301	3300012212	Avena Fatua Rhizosphere	EESSSPREPDDAMARQSGGVAEDVEPLTTHEDAERTAQGSLEGTAGPERTDTADNLKTE*
Ga0150985_1150459262	3300012212	Avena Fatua Rhizosphere	MAKQSSSRREPDDAMARQSLEVSEDAQPVTTGEEAEKTAQGSLEGTAGPERTDTADDLQTEA*
Ga0150985_1181827113	3300012212	Avena Fatua Rhizosphere	MTEQSGSQREPDDAMARQSGAVSEDLQPVTTDEDADKTAQGSLEGTAGPEGTDTANNLQTE*
Ga0150985_1190452612	3300012212	Avena Fatua Rhizosphere	MSEQAGSRRESADTTARESLAVSEDAQPVTTDEDADRTAQGSLEGTAGPERTDTADNLQTE*
Ga0150985_1207760642	3300012212	Avena Fatua Rhizosphere	MARQSLEVSEDAQPITTDEHAEKTAQGSLKGAAGPERTDTADKLQTE*
Ga0150985_1214994704	3300012212	Avena Fatua Rhizosphere	MSEQSGSRREPDDAMARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADKLQTE*
Ga0150984_1021401462	3300012469	Avena Fatua Rhizosphere	MTEGPDSRREPDDAMARQSGAVSEDVQPVTTTEDAEKAARGSLEGTAGPERTDEADNLQTD*
Ga0150984_1060022031	3300012469	Avena Fatua Rhizosphere	VAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKTEWPR*
Ga0150984_1070785302	3300012469	Avena Fatua Rhizosphere	VAQQTNSARKPDDDMARQSGAVSEDVQPVTTDEDADKTAQGSLEGTAGAERTDTADNLETE*
Ga0150984_1170251053	3300012469	Avena Fatua Rhizosphere	MSEQAGSRRESADATARESLAVSEDAQPVTTDEDADRTAQGSLEGTAGPERTDTADNLQTE*
Ga0150984_1222235252	3300012469	Avena Fatua Rhizosphere	VSEESSSLREPDDARACQSGGLAEDVEPLTTHEDAKRTARGSLEGTAGPERTDTADNLKTE*
Ga0164302_103547372	3300012961	Soil	MARQSLEVSEDAQPITTDEHAEKTAQGSLESTAGPARTDTADKLQTE*
Ga0164305_119695172	3300012989	Soil	MARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADKLQTE*
Ga0163162_100683871	3300013306	Switchgrass Rhizosphere	ESHAPMARQSLEVSEDAQPVTNDEDADKTAQGSLEGTAGPERTDTADNLETERP*
Ga0163163_111616392	3300014325	Switchgrass Rhizosphere	MSEPSGNRREPDDAMARQSLEVAEDVQPVTTDEDADTTAQGSREGTADPERTNPAGNPPTE*
Ga0157380_100975681	3300014326	Switchgrass Rhizosphere	RMSEQTGSPRESDDPMARRSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP*
Ga0182000_100568623	3300014487	Soil	MARQSGAVSEDVQPLTTDQDAEKTARGSLEGTAGPEGTDTTN
Ga0173480_112103811	3300015200	Soil	MTTPSTAEGKAVMSEQSGSRREPDDAMARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADKLRTE*
Ga0190266_101071402	3300017965	Soil	MSEESSSPREPDDAMARQSGGVAEDVEPLITHEDAERTAQGSLEGTAGPERADTADNLKT
Ga0190266_104846293	3300017965	Soil	MARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTAD
Ga0190266_105138621	3300017965	Soil	MSEQTGSPRESDDPMARQSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP
Ga0190265_100057133	3300018422	Soil	MSEQPGSRREPDDAMARQSGAVSEDAQPVTTDEDSDATAQGSLEGTAGPERTDEADNVQTERAPRT
Ga0190265_105811541	3300018422	Soil	MAEPSDTRREPDDVMARQSGAVSEDVQPVTTDEGAAGTATGSLEGAAGAERTDETDDVQT
Ga0190265_116250922	3300018422	Soil	MSEESSSLREPDDAMARQSGELAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKT
Ga0190275_100523232	3300018432	Soil	MSEEPSSLREPDDAVARRSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNHKT
Ga0190275_102647312	3300018432	Soil	MSEQPGSRREPDDAMARQSGAVSEDAQPVTTDEDSDATAQGSLEGTAGPERTDEADNVQT
Ga0190275_118857712	3300018432	Soil	MSEESSSLREPDDAMARRSGEVAEDVQPLTTHEDAEKTARGSLQGRPGPKEPITADNLKT
Ga0190269_100993682	3300018465	Soil	MSEQPTSRREPDDAMARQSGAVSEDAQPVTTDDGAEKTAQGSLEGTAGPERTDKADNLQT
Ga0190269_102252473	3300018465	Soil	MSEESSSLREPDDAMARQSGAVSEDVQPLTTDEDAEKTARGSLQGAAGPEGTDTPDSLKT
Ga0190268_100466172	3300018466	Soil	MSEQPTSRREPDDAMARQSGAVSEDAQPVTTDDDAEKTAQGSLEGTAGPERTDKADNLQT
Ga0190270_111848582	3300018469	Soil	MSEESSSLREPDDAMARQSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKT
Ga0190274_101610484	3300018476	Soil	MSEESSGLREPDDAMARQSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKT
Ga0190271_129788851	3300018481	Soil	MSEESSSLREPDDAMARRSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTADNLKT
Ga0190271_136830121	3300018481	Soil	PSDTRREPDDVMARQSGAVSEDVQPVTTDGGAARTAKGSLEGTAGAERTDETDDVQME
Ga0190273_102964352	3300018920	Soil	MSEESSSLREPDDAMARQSGEVAEDVQPLISHEDAETTARGSLQGTAGPKGADTADNLKT
Ga0184648_13981212	3300019249	Groundwater Sediment	MSKESSSLREPDDAMARQSGGVAEDVEPLTTHEDAERTAQGSLEGTAGPERTDTADNLKT
Ga0190264_114621241	3300019377	Soil	MSGQSESWGEEDDAMARQSGAVSEDVQPVTTDEDGDKTAEGSLQGTAGSERTDEADNLQT
Ga0197907_111621981	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MAKQSGSRREPDDAMARQSLEVSEDVQPVTTGEDAEKTAQGSLEGTAGPERTDTADDLQTGA
Ga0213876_100850083	3300021384	Plant Roots	MSERSGSHEEPDGAVARQSLEVSEDAQPVATDEDADKTAQGSLEGTAGAERTDPVDTMQA
Ga0207710_100296544	3300025900	Switchgrass Rhizosphere	MSEQTGSPRESDDPMARRSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP
Ga0207688_100048367	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP
Ga0207688_100952103	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPSGNRREPDDAMARQSLEVAEDVQLVTTDEDADTTAQGSREGTADPERTNPAGNPPT
Ga0207643_106267722	3300025908	Miscanthus Rhizosphere	MSEQTGSPRESDDPMARRSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLET
Ga0207654_109711171	3300025911	Corn Rhizosphere	MSEPSGNRREPDDAMARQSLEVAEDVQLVTTDEDADTTAQGSREGTADPER
Ga0207694_104623551	3300025924	Corn Rhizosphere	SDDPMARQSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP
Ga0207661_107326471	3300025944	Corn Rhizosphere	MAKQSGSRREPDDAMARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADDLQTGA
Ga0207639_113224251	3300026041	Corn Rhizosphere	ESDDPMARRSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP
Ga0209574_100357541	3300027809	Agave	MSEPMEPREPDDAMARQSGAVSEDVQPLTTDQDAEKTARGSLEETAGPEGTDTTNSLKTD
Ga0268266_104717841	3300028379	Switchgrass Rhizosphere	MSEPSGNRREPDDAMARQSLEVAEDVQLVTNDEDADTTAQGSREGTADPERTNPAGNPPT
Ga0247821_107660702	3300028596	Soil	HGEGRTRMSEQTGSQRESDDPMARQSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP
Ga0307321_10385142	3300028704	Soil	MSEESSSLREPDDAMARQSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTATADNLKTE
Ga0307297_102890582	3300028754	Soil	PMSEESSSLREPDDATARQSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTATADNLKTE
Ga0307283_102607081	3300028790	Soil	MARQSLEVSEDAQPITTDEHAEKTAQGSLEGTAGPERTDTADKLQTE
Ga0307294_103734001	3300028810	Soil	MSEESSSLREPDDAMARQSGEVAEDVQPLTTHEDAEKTARGSLQGTAGPEGADTATADN
Ga0247825_106026552	3300028812	Soil	MPEPSDTRREPDDVMARQSGAVSEDVQPVTTDGGAARTAKGSLEGTAGAERTDETDDVQM
Ga0247827_112129991	3300028889	Soil	PMARQSLEVSEDAQPVTTDEDADKTAQGSLEGTAGPERTDTADNLETERP
Ga0307413_116661751	3300031824	Rhizosphere	MSQPSGTRREPDDMMARQSGAVSEDVQPVTTDEDAAGTATGSVEGTADTERTDEAPDLQT
Ga0307410_105221982	3300031852	Rhizosphere	MSEQPGSRREPDDAMARQSGAVSEDAQPVTTDEDSDATARGSLEGTAGPERTDEADNVQTEGAPRT
Ga0307410_105805162	3300031852	Rhizosphere	MSEESSSPRKPDDALARQSGAVSEDEQAVTTHEDAERTARGSLQGTAGPEGTDTSDSLET
Ga0308175_1002459654	3300031938	Soil	MSEESSSLREPDDAMARQSGGVAEDVEPLTTHEDAERTARGSLEGTAGPERTDTADNLKT
Ga0308175_1028732941	3300031938	Soil	SPREPDDAMARQSGGVAEDVEPLTTHEDAERTAQGSLEGTAGPERTDTADNLKTE
Ga0308174_119100011	3300031939	Soil	MSEESSSLREPDDALARQSGGVAEDVEPLTTHEDAERTAQGSREGTAGPERTDTADNLKT
Ga0308176_127021821	3300031996	Soil	APMSEESSSLREPDDAMARQSGGVAEDVEPLTTHEDAERTARGSLEGTAGPERTDTADNLKTE
Ga0307416_1011806792	3300032002	Rhizosphere	MSEPMDLREPDDAMARQSGAVSEDEQAVTTHEDAEKTARGSLQGTAGPEGTDTPDSL
Ga0307416_1034705661	3300032002	Rhizosphere	MSQPSGTRREPDDMMARQSGAVSEDVQPVTTDEDAAGTATGSVEGTADTERTDEA
Ga0308173_121884771	3300032074	Soil	MARQSGGVAEDVEPLTTHEDAERTAQGSREGTAGPERTDTADNLKTE
Ga0307415_1012800901	3300032126	Rhizosphere	MSEESSSPREPDDALARQSGAVSEDEQAVTTHEDAERTARGSLQGTAGPEGTDTSDSLET

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103736

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences