NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103733

Metagenome Family F103733

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103733
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 47 residues
Representative Sequence IDFDVFNVLNAATPTAANFQSGPSFGYVTNVIPARIARLGVRFRF
Number of Associated Samples 91
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.99 %
% of genes from short scaffolds (< 2000 bps) 0.99 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.010 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(14.852 % of family members)
Environment Ontology (ENVO) Unclassified
(23.762 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(51.485 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.
1Ga0063454_1009555251
2Ga0062591_1024866411
3Ga0066673_105806642
4Ga0066679_107285472
5Ga0066684_110864152
6Ga0066671_103528421
7Ga0066675_110909932
8Ga0065705_110304201
9Ga0070690_1006381932
10Ga0070680_1004423501
11Ga0070673_1014185041
12Ga0066681_104327922
13Ga0066687_109810842
14Ga0070706_1018530462
15Ga0070707_1023386201
16Ga0073909_102065771
17Ga0070697_1019558922
18Ga0070672_1007244452
19Ga0070695_1014854461
20Ga0066707_108645281
21Ga0066708_106716881
22Ga0070702_1015541921
23Ga0068859_1003923851
24Ga0068859_1005944831
25Ga0066905_1008549391
26Ga0066903_1015036122
27Ga0068858_1023346111
28Ga0070716_1016216182
29Ga0079222_104434642
30Ga0066665_100746781
31Ga0075428_1006157591
32Ga0075421_1019438782
33Ga0075434_1003706192
34Ga0075434_1009015992
35Ga0075434_1017386722
36Ga0075424_1008106921
37Ga0075424_1020868671
38Ga0075424_1021723172
39Ga0079219_112881351
40Ga0075435_1016421031
41Ga0066710_1004706261
42Ga0066710_1027668402
43Ga0099827_118295961
44Ga0079224_1003010994
45Ga0114129_113437942
46Ga0111538_133940611
47Ga0114970_103829182
48Ga0105249_134656622
49Ga0105856_12669771
50Ga0126374_106052212
51Ga0134080_102910232
52Ga0134071_102738982
53Ga0126378_109683142
54Ga0134122_103802092
55Ga0137392_106281592
56Ga0137393_116978552
57Ga0137388_112052832
58Ga0137374_109744942
59Ga0137377_100861362
60Ga0150985_1108130472
61Ga0137370_107749812
62Ga0137384_109684931
63Ga0150984_1169336211
64Ga0150984_1221339441
65Ga0157288_101598162
66Ga0137394_106587422
67Ga0137394_109571052
68Ga0137359_111830331
69Ga0137359_117418091
70Ga0137407_109630622
71Ga0164303_111966032
72Ga0137420_14919188
73Ga0132255_1029472112
74Ga0182036_109389721
75Ga0182034_108586272
76Ga0184625_106300851
77Ga0066667_113900761
78Ga0066669_111568782
79Ga0210382_104217861
80Ga0207653_103529081
81Ga0207688_101708362
82Ga0207652_109173752
83Ga0207646_105141281
84Ga0207690_111301751
85Ga0207686_101123972
86Ga0207712_119292322
87Ga0209761_11547702
88Ga0209687_12816172
89Ga0137415_112968091
90Ga0307282_106247802
91Ga0307312_109301682
92Ga0318538_100927642
93Ga0306919_114686361
94Ga0306925_119720991
95Ga0310900_109875842
96Ga0306921_103445262
97Ga0306921_105667231
98Ga0318505_104350951
99Ga0307472_1014052342
100Ga0310914_118979102
101Ga0364943_0426946_1_132
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 9.59%    β-sheet: 0.00%    Coil/Unstructured: 90.41%
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51015202530354045IDFDVFNVLNAATPTAANFQSGPSFGYVTNVIPARIARLGVRFRFSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
99.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Freshwater Lake
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Agricultural Soil
Grasslands Soil
Surface Soil
Switchgrass Rhizosphere
Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Permafrost Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Sediment
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
Switchgrass Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
4.0%14.9%9.9%5.0%3.0%5.9%7.9%3.0%10.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0063454_10095552513300004081SoilRFEIDFDVFNVLNAATATGANFQSGPSFGFVTGVIPARIARLGARFRF*
Ga0062591_10248664113300004643SoilFDVFNVLNAATPTGANFQSGPSFGYVTGVIPARIARLGARFRF*
Ga0066673_1058066423300005175SoilGAGTRLAIDFDVFNVFNAATATNANFQAGPSFGYITGVIPARIARLGARFRF*
Ga0066679_1072854723300005176SoilFEVDVDVFNVLNAATPTGANFQSGPTFGYVTGVIPARIARLSGRFRF*
Ga0066684_1108641523300005179SoilVFNALNAATPTGAQFQSGPSFGFVTGVIPARIARLGLRFRF*
Ga0066671_1035284213300005184SoilLDIDFDVFNALNAATPTGAQFQSGPSFGFVTGVIPARIARLGLRFRF*
Ga0066675_1109099323300005187SoilDVDVFNVLNAATPTAASFVTGPSFGFVSSVIPARIARLGVRFLF*
Ga0065705_1103042013300005294Switchgrass RhizosphereGGGRRLNFDVDVFNVLNAATPTAATFVTGPSFGYTSSVIPARIARLGVRFLF*
Ga0070690_10063819323300005330Switchgrass RhizosphereLGGSRRFEIDFDVFNVLNAATPTGANFQSGPSFGYVTGVIPARIARLGARFRF*
Ga0070680_10044235013300005336Corn RhizosphereSKDISLGGSRHLDIDFDVFNVLNAATPTAANFQSGPSFGYITGVLPARIARLGARFRF*
Ga0070673_10141850413300005364Switchgrass RhizosphereLNIDVDVFNVLNAATPTAASFVTGPSFGFVSSVIPARIARLGLRFLF*
Ga0066681_1043279223300005451SoilFNVLNAATPTNANFQSGPSFGYVTGVIPARIARLGVRFLF*
Ga0066687_1098108423300005454SoilRRFEIDVDVFNVLNAAAPTGANFQSGPSFGFVTGVIPARIARLGARFRF*
Ga0070706_10185304623300005467Corn, Switchgrass And Miscanthus RhizosphereIDFDVFNVLNAATPTGANFQTGPSFGFITGVIPARIARLGGRFRF*
Ga0070707_10233862013300005468Corn, Switchgrass And Miscanthus RhizosphereVFNVLNAATPTAASFVTGPSFGFVSSVIPARIARLGLRFLF*
Ga0073909_1020657713300005526Surface SoilLKLGGSRRLNIDVDVFNVLNAATPTAATFVTGPSFGYTSSVIPARIARLGVRYVF*
Ga0070697_10195589223300005536Corn, Switchgrass And Miscanthus RhizosphereSIGGGRRFEIDVDVFNVLNAATPTGANFQAGPSFGFVTGVIPARIARLGARFRF*
Ga0070672_10072444523300005543Miscanthus RhizosphereTGRRLNIDVDVFNVLNAATPTAASFVTGPSFGFVSSVIPARIARLGLRFLF*
Ga0070695_10148544613300005545Corn, Switchgrass And Miscanthus RhizosphereVDVFNVLNAATPTNANFQSGPTFGYVTGVIPARIARLGVRFRF*
Ga0066707_1086452813300005556SoilLNAATPTGAQFQSGPSFGFVTGVIPARIARLGLRFRF*
Ga0066708_1067168813300005576SoilLDFDIFNVLNAATPTSANFQSGPTFGYVTNVIPARIARLGLRFRF*
Ga0070702_10155419213300005615Corn, Switchgrass And Miscanthus RhizosphereSKEFKLAMGRLNIHVDVFNVLNAATPTAATFVTGPSFGYTTSVIPARIARLGLRYVF*
Ga0068859_10039238513300005617Switchgrass RhizosphereIDVDVFNVLNAATPTAASFVTGPSFGFVSSVIPARIARLGLRFLF*
Ga0068859_10059448313300005617Switchgrass RhizosphereVFNVLNAATPTNANFVTGPSFGFVSSVIPARIARLGLRFLF*
Ga0066905_10085493913300005713Tropical Forest SoilDFSLGAARRVDVDLDVFNVLNAATPTAANFQSGPSFGFVTGVIPARIARLGVRFRF*
Ga0066903_10150361223300005764Tropical Forest SoilGSKQLSMGGSRRLDLDFDLFNVLNAATATGATFASGPTFGFVTGVIPARIARLGVRFRF*
Ga0068858_10233461113300005842Switchgrass RhizosphereATPTNATFVTGPTFGYTSSVIPARIARLGVRFLF*
Ga0070716_10162161823300006173Corn, Switchgrass And Miscanthus RhizosphereSKGFSLGADRRFEIDVDVFNVLNAATPTSANFQSGPSFGYITGVIPARIARLGVRFRF*
Ga0079222_1044346423300006755Agricultural SoilGGGRRFEIDFDVFNVLNAATPTGANFQSGPSFGFVTGVIPARIARLGARFRF*
Ga0066665_1007467813300006796SoilGGRRLDVDVDVFNVLNAATPTAANFQSGPSFGYVTNVIPARIARLGVRFRF*
Ga0075428_10061575913300006844Populus RhizosphereMPYRGAAFVTGPSFGYTSSVIPARTARLGVRFLF*
Ga0075421_10194387823300006845Populus RhizosphereIDLDVFNVLNAATPTRAQFQAGPSFGFVTSVLPARIARLGGRFRF*
Ga0075434_10037061923300006871Populus RhizosphereGGGRRFEIDVDVFNVLNAATPTGANFQSGPSFGFVTGVIPARIARLGARFRF*
Ga0075434_10090159923300006871Populus RhizosphereIDFDVFNVLNAATPTAANFQSGPSFGYVTNVIPARIARLGVRFRF*
Ga0075434_10173867223300006871Populus RhizosphereRRLGIDFDVFNALNAATPTGATFASGPTFGYVTGVVPARIARLGARFTF*
Ga0075424_10081069213300006904Populus RhizosphereDVFNVLNAATPTGANFQSGPSFGFVTGVIPARIARFGARLRF*
Ga0075424_10208686713300006904Populus RhizosphereFDVFNALNAATPTGATFASGPTFGYVTGVVPARIARLGARFTF*
Ga0075424_10217231723300006904Populus RhizosphereDFDVFNVLNAATPTAANFQSGPSFGYVTNVIPARIARLGVRFRF*
Ga0079219_1128813513300006954Agricultural SoilAATPTAANFQSGPSFGFVTGVIPARIARLGARFRF*
Ga0075435_10164210313300007076Populus RhizosphereVDVFNVLNAATPTSANFQSGPSFAYVTGVIPARIARLGARFRF*
Ga0066710_10047062613300009012Grasslands SoilRRLDIDFDVFNALNAATPTGAKFESGPSFGFVTGVIPARIARLGLRFRF
Ga0066710_10276684023300009012Grasslands SoilNAATPTSANFQSGPSFGYVTNVIPARIARLGVRFRF
Ga0099827_1182959613300009090Vadose Zone SoilNVLNAATPTNANFQSGPSFGYVTNVIPARIARLGVRFRF*
Ga0079224_10030109943300009095Agricultural SoilMRGRTFTLVSVDVFNVVNTNAVTGAQFSSGPTFGYAQDVIPARIARIGVRFEF*
Ga0114129_1134379423300009147Populus RhizosphereDVFNVLNAATATAANFQAGPSFGYVTNVIPARIARLGVRFRF*
Ga0111538_1339406113300009156Populus RhizosphereAATPTSANFQAGPSFGYVTNVIPARIARLGVRFRF*
Ga0114970_1038291823300009163Freshwater LakeRRLDIDLDVFNVLNAATPTAATFQAGPTFGYITGVIPARIARAGVRLRF*
Ga0105249_1346566223300009553Switchgrass RhizosphereVKLGSGRRLNIDVDVFNVLNAATPTAANFQTGPSFGYVTSVIPARIARLGVRFLF*
Ga0105856_126697713300009662Permafrost SoilDVFNVLNAATPTAANFVTGSAFGFVSSVIPARIARLGVRFLF*
Ga0126374_1060522123300009792Tropical Forest SoilFNVLNAATPTAANFQSGPSFGYVTGVIPARIARLGARFRF*
Ga0134080_1029102323300010333Grasslands SoilVDVDVDVFNVLNAATPTNANFQSGPSFGYVTGVIPARIARLGVRFLF*
Ga0134071_1027389823300010336Grasslands SoilMRLGIDADVFNVLNAATPTNANFQSGPSFGYITGVIPARIARLGARFSF*
Ga0126378_1096831423300010361Tropical Forest SoilERWKAAIDLDVFNLLNEATPLGANWSSGPTFGYVTDVIPGRIARIGVKFEF*
Ga0134122_1038020923300010400Terrestrial SoilGGRRFEIDFDLFNVLNAATPTGANFQSGPSFGFVTGVIPARIARLGARFRF*
Ga0137392_1062815923300011269Vadose Zone SoilVFNVLNTNAPTAATFASGLTFGYVTGVIPARIARIAARFRF*
Ga0137393_1169785523300011271Vadose Zone SoilDFDVFNVLNTNAPTAATFASGLTFGYVTGVIPARIARIAARFRF*
Ga0137388_1120528323300012189Vadose Zone SoilNVLNAATPTNANFQSGPSFGYVTGVIPARIARLGVRFRF*
Ga0137374_1097449423300012204Vadose Zone SoilLNAATPTAASFVTGPSFGFVSSVIPARIARLGLRFLF*
Ga0137377_1008613623300012211Vadose Zone SoilVDVDIFNVLNAATPTQANFQAGPSFGYVTNVIPARIARLGVRFRF*
Ga0150985_11081304723300012212Avena Fatua RhizosphereRRLGIDVDLFNALNVATPTAATFASGPTFGYVTDVVPGRIARIGGKLTF*
Ga0137370_1077498123300012285Vadose Zone SoilRLDIDVDLFNALNAATPTGATFGAGPTFGYVNGVTPARIARLGLRFRF*
Ga0137384_1096849313300012357Vadose Zone SoilKDFSLGGARRFEIDVDVFNVLNAATPTNANFQSGPSFGFITGVIPARIARLGARFRF*
Ga0150984_11693362113300012469Avena Fatua RhizosphereVFNLLNAATPTGANFQSGPSFGYVTGVIPGRIARLGGRFRF*
Ga0150984_12213394413300012469Avena Fatua RhizosphereTKGIAVGGSRRLGIDVDLFSALNLATPTNATFASGPTFGYVTDVVPGRIARIGGKLTF*
Ga0157288_1015981623300012901SoilKLGGGRRLNIDVDVFNVLNAATPTAATFVTGPSFGYTSSVIPARIARLGVRFMF*
Ga0137394_1065874223300012922Vadose Zone SoilDIDVDLFNVLNAATPTTANFQSGPSFGYVTNVIPARIARVGARFRF*
Ga0137394_1095710523300012922Vadose Zone SoilRIDVDVDVFNVLNAATPTSANFQSGPSFGYVTNVIPARIARLGVRFRF*
Ga0137359_1118303313300012923Vadose Zone SoilRAGKDFSLGGARRIDVDVDVFNVLNAATPTSANFQSGPSFGYVTNVIPARIARLGVRFRF
Ga0137359_1174180913300012923Vadose Zone SoilRRFEIDVDVFNVLNAATPTGANFQAGPSFGFVTGVIPARIARLGARFRF*
Ga0137407_1096306223300012930Vadose Zone SoilIDVDVFNVLNAATPTQANFQSGPSFGYVTGVIPARIARLGARFLF*
Ga0164303_1119660323300012957SoilDVFNVLNAATPTNANFQSGPTFGYVTGVIPARIARLAVRFLF*
Ga0137420_149191883300015054Vadose Zone SoilLNAATPTLASFVTGPSFGFVSSVTPARIARLGLRFLF*
Ga0132255_10294721123300015374Arabidopsis RhizosphereVFNVLNAATPTSANFQAGPSFGYVTNVIPARIARLGVRFRF*
Ga0182036_1093897213300016270SoilAATPTAATFVTGPSFGYTTSVIPARIARLGVRYVF
Ga0182034_1085862723300016371SoilFNVFNAATPTGANFQSGPTFGYVTGVIPARIARLGARFRF
Ga0184625_1063008513300018081Groundwater SedimentSKDLKLGTGRRLNIDVDVFNVLNAATPTAASFVTGPSFGFVSSVIPARIARLGLRFLF
Ga0066667_1139007613300018433Grasslands SoilIDLDVDVFNVLNAATPTSANFQAGPSFGYVTNVIPARIARLGGGFRF
Ga0066669_1115687823300018482Grasslands SoilGAGTRLAIDFDVFNVFNAATPTNANFQAGPSFGYITGVIPARIARLGARFRF
Ga0210382_1042178613300021080Groundwater SedimentDLFNVLNAATPTNATFVTGPSFGYTSSVIPARIARLGVRFVF
Ga0207653_1035290813300025885Corn, Switchgrass And Miscanthus RhizosphereDVFNVLNAATPTNANFQSGPSFGYVTGVIPARIARLGVRFRF
Ga0207688_1017083623300025901Corn, Switchgrass And Miscanthus RhizosphereVFNLLNAATPTAATFVTGPSFGYTSSVIPARIARLGVRFLF
Ga0207652_1091737523300025921Corn RhizosphereRHLDIDFDVFNVLNAATPTAANFQSGPSFGYITGVLPARIARLGARFRF
Ga0207646_1051412813300025922Corn, Switchgrass And Miscanthus RhizosphereSAVDVFNVLNAATALSANFQSGPSFGYVTNVIPARIARLGARFRF
Ga0207690_1113017513300025932Corn RhizosphereNVLNAATPTAANFQSGPSFGYITGVLPARIARLGARFRF
Ga0207686_1011239723300025934Miscanthus RhizosphereIDVDVFNVLNAATPTAATFVTGPSFGYTTSVIPARIARLGLRYVF
Ga0207712_1192923223300025961Switchgrass RhizosphereVFNVLNAATPTAATFVTGPSFGYTSSVIPARIARLGVRFLF
Ga0209761_115477023300026313Grasslands SoilDFSLGSGRRIDVDFDIFNVLNAATPTSANFQSGPSFGYVTNVIPARIARLGVRFRF
Ga0209687_128161723300026322SoilDFSIGGGRRFEIDVDVFNVLNAAAPTGANFQSGPSFGFVTGVIPARIARLGARFRF
Ga0137415_1129680913300028536Vadose Zone SoilDIDFDVFNALNAATPTGAQFQSGPSFGFVTGVIPARIARLGLRFRF
Ga0307282_1062478023300028784SoilFNVLNAATPTAANFQSGPSFGFVSNVIPARIARLGVRFRF
Ga0307312_1093016823300028828SoilLDVDVDIFNVLNAATPTAANFQSGPSFGFVSNVIPARIARLGVRFRF
Ga0318538_1009276423300031546SoilMGRLSIDVDVFNVLNAATPTAATFVTGPSFGYTTSVIPARIARLGVRYVF
Ga0306919_1146863613300031879SoilVDVFNVLNAATPTAATFVTGPSFGYTTSVIPARIARLGVRYVF
Ga0306925_1197209913300031890SoilFGGDRRFDIDFDIFNVLNAATPTAANFQSGPSFGYVTGVIPARIARLGARFRF
Ga0310900_1098758423300031908SoilASKDLKLGTGRRLNIDVDVFNVLNAATPTAASFVTGPSFGFVSSVIPARIARLGLRFLF
Ga0306921_1034452623300031912SoilIDLDVFNLLNEATPLGANWSSGPTFGYVTDVIPGRIARIGFKFEF
Ga0306921_1056672313300031912SoilAGRRLEIDLDVFNVFNAATPTGANFQSGPTFGYVTGVIPARIARLGARFRF
Ga0318505_1043509513300032060SoilNVLNAATPTAATFVTGPSFGYTTSVIPARIARLGVRYVF
Ga0307472_10140523423300032205Hardwood Forest SoilIDVDVLNVLNAATPTAATFVTGPSFGYTTSVIPARIARLGLRYVF
Ga0310914_1189791023300033289SoilKATIDLDVFNLLNEATPLGANWSSGPTFGYVTDVIPGRIARIGFKFEF
Ga0364943_0426946_1_1323300034354SedimentVDVFNVLNAATPTAASFVTGPSFGFVSSVIPARIARLGLRFMF


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