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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103682 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 53 residues |
| Representative Sequence | MSNKPHLRPHQKKRQASQITGLLVAIFILAIFALAIALEATGHVVFRGR |
| Number of Associated Samples | 75 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 83.33 % |
| % of genes near scaffold ends (potentially truncated) | 3.96 % |
| % of genes from short scaffolds (< 2000 bps) | 6.93 % |
| Associated GOLD sequencing projects | 71 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.46 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (93.069 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.713 % of family members) |
| Environment Ontology (ENVO) | Unclassified (28.713 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (71.287 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 41.56% β-sheet: 0.00% Coil/Unstructured: 58.44% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF13302 | Acetyltransf_3 | 3.96 |
| PF01895 | PhoU | 2.97 |
| PF00583 | Acetyltransf_1 | 1.98 |
| PF00296 | Bac_luciferase | 1.98 |
| PF13649 | Methyltransf_25 | 1.98 |
| PF01872 | RibD_C | 1.98 |
| PF03807 | F420_oxidored | 1.98 |
| PF01758 | SBF | 0.99 |
| PF02770 | Acyl-CoA_dh_M | 0.99 |
| PF00654 | Voltage_CLC | 0.99 |
| PF09286 | Pro-kuma_activ | 0.99 |
| PF12681 | Glyoxalase_2 | 0.99 |
| PF06689 | zf-C4_ClpX | 0.99 |
| PF12840 | HTH_20 | 0.99 |
| PF08241 | Methyltransf_11 | 0.99 |
| PF12697 | Abhydrolase_6 | 0.99 |
| PF13238 | AAA_18 | 0.99 |
| PF03466 | LysR_substrate | 0.99 |
| PF13419 | HAD_2 | 0.99 |
| PF13411 | MerR_1 | 0.99 |
| PF07685 | GATase_3 | 0.99 |
| PF00005 | ABC_tran | 0.99 |
| PF12146 | Hydrolase_4 | 0.99 |
| PF13466 | STAS_2 | 0.99 |
| PF01609 | DDE_Tnp_1 | 0.99 |
| PF13207 | AAA_17 | 0.99 |
| PF01243 | Putative_PNPOx | 0.99 |
| PF04542 | Sigma70_r2 | 0.99 |
| PF00903 | Glyoxalase | 0.99 |
| PF08220 | HTH_DeoR | 0.99 |
| PF05016 | ParE_toxin | 0.99 |
| PF03551 | PadR | 0.99 |
| PF00795 | CN_hydrolase | 0.99 |
| PF00196 | GerE | 0.99 |
| PF07729 | FCD | 0.99 |
| PF13191 | AAA_16 | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG0262 | Dihydrofolate reductase | Coenzyme transport and metabolism [H] | 1.98 |
| COG2141 | Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) | Coenzyme transport and metabolism [H] | 1.98 |
| COG1985 | Pyrimidine reductase, riboflavin biosynthesis | Coenzyme transport and metabolism [H] | 1.98 |
| COG2186 | DNA-binding transcriptional regulator, FadR family | Transcription [K] | 0.99 |
| COG5659 | SRSO17 transposase | Mobilome: prophages, transposons [X] | 0.99 |
| COG5433 | Predicted transposase YbfD/YdcC associated with H repeats | Mobilome: prophages, transposons [X] | 0.99 |
| COG5421 | Transposase | Mobilome: prophages, transposons [X] | 0.99 |
| COG4941 | Predicted RNA polymerase sigma factor, contains C-terminal TPR domain | Transcription [K] | 0.99 |
| COG4934 | Serine protease, subtilase family | Posttranslational modification, protein turnover, chaperones [O] | 0.99 |
| COG3385 | IS4 transposase InsG | Mobilome: prophages, transposons [X] | 0.99 |
| COG3293 | Transposase | Mobilome: prophages, transposons [X] | 0.99 |
| COG3039 | Transposase and inactivated derivatives, IS5 family | Mobilome: prophages, transposons [X] | 0.99 |
| COG1191 | DNA-directed RNA polymerase specialized sigma subunit | Transcription [K] | 0.99 |
| COG0038 | H+/Cl- antiporter ClcA | Inorganic ion transport and metabolism [P] | 0.99 |
| COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | Transcription [K] | 0.99 |
| COG1960 | Acyl-CoA dehydrogenase related to the alkylation response protein AidB | Lipid transport and metabolism [I] | 0.99 |
| COG1846 | DNA-binding transcriptional regulator, MarR family | Transcription [K] | 0.99 |
| COG1802 | DNA-binding transcriptional regulator, GntR family | Transcription [K] | 0.99 |
| COG1733 | DNA-binding transcriptional regulator, HxlR family | Transcription [K] | 0.99 |
| COG1695 | DNA-binding transcriptional regulator, PadR family | Transcription [K] | 0.99 |
| COG1595 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family | Transcription [K] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 93.07 % |
| All Organisms | root | All Organisms | 6.93 % |
| Visualization |
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| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005602|Ga0070762_10071843 | Not Available | 1950 | Open in IMG/M |
| 3300017942|Ga0187808_10146393 | Not Available | 1040 | Open in IMG/M |
| 3300020582|Ga0210395_10910148 | Not Available | 653 | Open in IMG/M |
| 3300021178|Ga0210408_10144437 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1883 | Open in IMG/M |
| 3300021406|Ga0210386_10966439 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 727 | Open in IMG/M |
| 3300027497|Ga0208199_1003302 | Not Available | 4518 | Open in IMG/M |
| 3300027879|Ga0209169_10003094 | All Organisms → cellular organisms → Bacteria | 9869 | Open in IMG/M |
| 3300027908|Ga0209006_11114448 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09 | 621 | Open in IMG/M |
| 3300028015|Ga0265353_1010099 | Not Available | 851 | Open in IMG/M |
| 3300031708|Ga0310686_111871320 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 3935 | Open in IMG/M |
| 3300032895|Ga0335074_10007686 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 14955 | Open in IMG/M |
| 3300032895|Ga0335074_10192637 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 2500 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 28.71% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 14.85% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 11.88% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 7.92% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 5.94% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 3.96% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 3.96% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 3.96% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.97% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 2.97% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 1.98% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.98% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 1.98% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.99% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.99% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.99% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.99% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004121 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005534 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 | Environmental | Open in IMG/M |
| 3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
| 3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300009672 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010876 | Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010880 | Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
| 3300014654 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG | Environmental | Open in IMG/M |
| 3300017942 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3 | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017973 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG | Environmental | Open in IMG/M |
| 3300017974 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
| 3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300022557 | Paint Pots_combined assembly | Environmental | Open in IMG/M |
| 3300022715 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300026356 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A | Environmental | Open in IMG/M |
| 3300027109 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes) | Environmental | Open in IMG/M |
| 3300027497 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027568 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027676 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027692 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
| 3300027894 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028015 | Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030580 | II_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030739 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3 | Environmental | Open in IMG/M |
| 3300031233 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGIcombinedJ26739_1003101873 | 3300002245 | Forest Soil | KPHQRPHQKKRQSSQLTRLLVAIIIIAIFALVIALEATGHVIFRGR* |
| JGIcombinedJ51221_100257323 | 3300003505 | Forest Soil | MLFHQGNIMSNKPHLRPHQKKRQASQITGLLVAIFILAIFALAIALEATGHVVFRGR* |
| JGIcombinedJ51221_100723862 | 3300003505 | Forest Soil | MSNKPHLRPHQIQRHASRITKLLVAILIVSAFVLVLALEATGHIIFRGR* |
| JGIcombinedJ51221_104267222 | 3300003505 | Forest Soil | MMSNKPHLHPHQKKRQASRTTRLLVAILIVAAFALVIALEATGRVEFRGRLIPVMRGR |
| Ga0062385_109798222 | 3300004080 | Bog Forest Soil | MSNKPHLHPHQKKRQASLPTRLLVGILIVAIFALVIALEATGHIEFRGR* |
| Ga0062387_1010078142 | 3300004091 | Bog Forest Soil | MMSNKPHLRPHQEERQASRITRLFVAILILAIFILAIALELTGHVVFRGR* |
| Ga0062389_1005939392 | 3300004092 | Bog Forest Soil | MMSNKPHRRPHQKKRRASQITRLLVVILIIAIFVLLIALELTGHVVFRGR* |
| Ga0058882_13821332 | 3300004121 | Forest Soil | MMSNKPHLRPHEEERHASRVTRLLVAILIAGIFVLLIALELTGRVEFRGRLVLLRGGRSTLSAVGR* |
| Ga0070714_1007331703 | 3300005435 | Agricultural Soil | MMSNKPHLRPHQEKRQASQVTRLLVAIVIITIFALAIALEATGHIVFRGR* |
| Ga0070713_1003493312 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MSNKPHLRPHQEKRQASQVTRLLVAIVIITIFALAIALEATGHIVFRGR* |
| Ga0070735_105249632 | 3300005534 | Surface Soil | MMSNKPHQRPHQKKRQWSQLTRLLVAIIIIAIFALVIALEATGHIIFRGR* |
| Ga0070731_105199311 | 3300005538 | Surface Soil | MMSNKPHQRPHQKKRQSSRMARLLVAIVIIAIFALVIALEASGHIVFRGR* |
| Ga0070733_103081962 | 3300005541 | Surface Soil | MSNKPHQHPHQQVRHASRITRLLVAILIVAFLVLVIALELTDHVIFRGR* |
| Ga0070761_101200593 | 3300005591 | Soil | MSNKPHLRPHQEKRHASQITRLLVGILIVAIFVLVIALELTGHIVFRGR* |
| Ga0070762_100718433 | 3300005602 | Soil | MMSNKPHLHPHKEEQHASRITRLLVAILVVGIIALLVALELTGRVEFRGRLILLRGGRSTLTAVSH* |
| Ga0070763_106987082 | 3300005610 | Soil | MSNKPHLRPHQKKRQASKITGLLVAIFILAIFALAIALEATGHVVFRGR* |
| Ga0070712_1002006162 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MSNKPHLRPHQEKRQASQVTRLIVAIVIITIFALAIALEATGHIVFRGR* |
| Ga0070765_1014052601 | 3300006176 | Soil | MMSNKPHQRPHQKKQATRITRLLVWILIVGIFALVIALEATGHIIFRGRLNP |
| Ga0073928_101719894 | 3300006893 | Iron-Sulfur Acid Spring | MSNKPHLRPHQEKRHAGQITRLLVAILIIAIFALVIALEATGHVIFRGR* |
| Ga0073928_102109652 | 3300006893 | Iron-Sulfur Acid Spring | MSNKPHQRPHQKKRQSSQLTRLLVAIIIIAIFALVVALEATGHIIFRGR* |
| Ga0073928_110442002 | 3300006893 | Iron-Sulfur Acid Spring | MSNKPHQRPHQKKRQSSKVSRLLVAIVIVAIFALVITLEATGHVVFRGR* |
| Ga0116215_10070601 | 3300009672 | Peatlands Soil | MPFHQGNMMSNKPHLRPHQEERQASRITRLFVAILVLAIFTLAIALELTGHVVFRGRLILLRGAAGC* |
| Ga0126381_1006406283 | 3300010376 | Tropical Forest Soil | MSNKAHLRPHQRERRASRATRLLVAILIVSFVVLGAVLAATDPGMI |
| Ga0126361_102319022 | 3300010876 | Boreal Forest Soil | MMSNKPHQRPHQKKRQSSQLTRLVVAIIIIAIFALVIALEATGHVIFRGR* |
| Ga0126350_117969262 | 3300010880 | Boreal Forest Soil | MMSNKPHLRPHQKERRASRISRLLVATLIIAIFALAIALEATGHIIFRGR* |
| Ga0150983_135972141 | 3300011120 | Forest Soil | GNMMSNKPHQHPHQKKRQASLTTRLLMAIVILAIFALVIALEATGHVVFRGR* |
| Ga0181537_104149962 | 3300014201 | Bog | MMSNKPHLHPHQKKRQASLLTRLLVGILVVAIFALVIALEATGHIEFRGR* |
| Ga0181525_107810581 | 3300014654 | Bog | NKPHLHPHQKKRQASLLTRLLVGILVVAIFALVIALEATGHIEFRGR* |
| Ga0187808_101463933 | 3300017942 | Freshwater Sediment | GNMMSNKPHLRPHQEERHASRITRLLVAVLILAIFILAIALELTGHVVFRGRLILLRGAAGC |
| Ga0187783_1000293710 | 3300017970 | Tropical Peatland | MMSNKPHRHPHHEKRQASQITRLLVAILIITIFALAIALEVTGRIEFRGR |
| Ga0187783_100994132 | 3300017970 | Tropical Peatland | MMSNKPHLRSHQEERQASRITRLFVAILILAIFALALALELTGHVVFRGR |
| Ga0187783_109201681 | 3300017970 | Tropical Peatland | SVMSNKPHLRPHQEKRHASPLTRLLVAILVVAVFALLIALELTGHVIFRGR |
| Ga0187781_106609581 | 3300017972 | Tropical Peatland | MSNKPHLRPHQEKRQASQVTRLLVALLIIAIFALAIVLEATGHVVFRGRLILFLRGR |
| Ga0187780_103755581 | 3300017973 | Tropical Peatland | MMSNKPHLRPHEKGRRASRITRLLVAVFVIAIFALAIALEMTGRVEFRGRLILLSGPVGC |
| Ga0187777_111581091 | 3300017974 | Tropical Peatland | MSNKPHLRPHQEGRQASRITRSLVAILIIAIFALAIALELTGHVL |
| Ga0210407_113789472 | 3300020579 | Soil | MSNKPHLRPHSKRRQVSQVTRLLIAILIVTLFALAIALEATGHVVFRGR |
| Ga0210399_100371325 | 3300020581 | Soil | MLFHQGNIMSNKPHLRPHQKKRQASQITGLLVALFILAIFALAIALEATGHVVFRGR |
| Ga0210395_103552121 | 3300020582 | Soil | MSNKPHLHPHQKKRQASRATRLLVAILIVAAFALVIALEATGRVEFRGRLIPVMRGR |
| Ga0210395_109101482 | 3300020582 | Soil | MSNKPHLRPHQEERQTSQITRLFVAILILAIFTLAIALELTGHVVFRGRLILSRGAA |
| Ga0210405_102020701 | 3300021171 | Soil | MMSNKPHQHPHQKKRQASLTTRLLMAIVILAILALVIALEATGHVVFRGR |
| Ga0210408_101444371 | 3300021178 | Soil | MSNKPHLRPHQEKRQASQVTRLLVAIVIITIFALAIALEATGHIVFRGRLILLSGVGLSSADCRLC |
| Ga0210388_103799211 | 3300021181 | Soil | NIMSNKPHLRPHQKKRQASQITGLLVAIFILAIFALAIALEATGHVVFRGR |
| Ga0210393_109829011 | 3300021401 | Soil | MSNKPHLRPHQKKRQASQITGLLVAIFILAIFALAIALEATGHVVFRGR |
| Ga0210393_115471381 | 3300021401 | Soil | AGFHERNMMSNKPHQRPHQKKRRSSKAARLLVAIVIIAIFALVITLEATGHVIFRGR |
| Ga0210393_116476492 | 3300021401 | Soil | MSNKPHQRPHQKKRQSSQLTRLLVAIIIIAIFALVIALEATGHVIFRGR |
| Ga0210385_100483404 | 3300021402 | Soil | MSNKPHLRPHQIQRHASRITKLLVAILIVSAFVLVLALEATGHIIFRGR |
| Ga0210385_107509551 | 3300021402 | Soil | MMSNKPHLRPHQEERQTSQITRLFVAILILAIFTLAIALELTGHVVFRGRLILSRGAAGC |
| Ga0210385_115301471 | 3300021402 | Soil | MPFHQGTTMSNKPHLRPHQKKRHASRVTRLLVAILVLAVLALAIALEMTGHVVF |
| Ga0210397_100132736 | 3300021403 | Soil | MSNKPHLRPHQEKRQASQVTRLLVAIVIIAVFALAIALEATGHIVFRGR |
| Ga0210397_101745251 | 3300021403 | Soil | MMSNKPHLHPHQEERHASRITRLFVAILILAIFALLIALEVTGHVIFRGRLVLLRPGR |
| Ga0210397_102642242 | 3300021403 | Soil | MSNKPHLRPHQEKRQASQITRLLMAILIIGIFALAIALEATGHVVFRGRLSFLSGPGQA |
| Ga0210397_104875991 | 3300021403 | Soil | MMSNKPHLRPHQKMQQASLTTRLLVAILILGILALAIALEVTGRVEFRGRL |
| Ga0210387_101884564 | 3300021405 | Soil | EIGSMSNKPHLRPHQKKRQASQITGLLVAIFILAIFALAIALEATGHVVFRGR |
| Ga0210386_100187167 | 3300021406 | Soil | MSNKPHLHPHQKQRQASRTTRLIVAILIVAIMALGIVLSASGHIPPRVWTLR |
| Ga0210386_101030241 | 3300021406 | Soil | MSNKAHLRPHQKERRATRISRLLVAVLIIAFFVLAIALEATGHIIFRGR |
| Ga0210386_109664391 | 3300021406 | Soil | MSNKPHQRPHQKKRQSSQLTRLLVAIIIIAIFALVIALEATGHVIFR |
| Ga0210383_105310991 | 3300021407 | Soil | MSNKPHQRPHQEKRQASRKTRLLVATLIIAIFALVIALEATGHVVFRGRL |
| Ga0210383_108718791 | 3300021407 | Soil | PFHQGTTMSNKPHLRPHQKKRHASRVTRLLVAILVLAVLALAIALEMTGHVVFRGRLIRLRGAAGC |
| Ga0210384_101350892 | 3300021432 | Soil | MSNKPHLRPHQEKRQASQVTRLLVAIVIITIFALAIALEATGHIVFRGRLILLSGVGLSSADCRPC |
| Ga0210392_112301281 | 3300021475 | Soil | MSNKPHLRPHQEKRQASQVTRLLVAIVIIAVFALAIALAA |
| Ga0210402_100955103 | 3300021478 | Soil | MSNKPHLRPHQEKRQASQITRLLMAILIIGIFALAIVLEATGHVVFRGRLSL |
| Ga0210402_118462601 | 3300021478 | Soil | MMSNKAHQHPHQEKRQANRITRLFVAILILAIFTFAIALELTGHVVFRGRL |
| Ga0212123_107201692 | 3300022557 | Iron-Sulfur Acid Spring | MMSNKPHLRPHQEKRHAGQITRLLVAILIIAIFALVIALEATGHVIFRGR |
| Ga0242678_10424771 | 3300022715 | Soil | NKPHLHPHQEERHASRFTRLFVAILILAVFVLLIALEVTGHVIFRGRLVLLRPGRGEPR |
| Ga0257150_10463221 | 3300026356 | Soil | MSNKPHLRPHQNKRHASQATRLLVAILVLAVFALAIALEMTGHVVFRGRLILLRGGR |
| Ga0208603_10047873 | 3300027109 | Forest Soil | MLFHQGNIMSNKPHLRPHQKKRQASQITGLLVAIFILAIFALAIALEATGHVVFRGR |
| Ga0208199_10033026 | 3300027497 | Peatlands Soil | MMSNKPHLRPHQEERQASRITRLFVAILVLAIFTLAIALELTGHVVFRGRLILLRGAAGC |
| Ga0208042_10023542 | 3300027568 | Peatlands Soil | MPFHQGNMMSNKPHLRPHQEERQASRITRLFVAILVLAIFTLAIALELTGHVVFRGRLILLRGAAGC |
| Ga0209333_10415203 | 3300027676 | Forest Soil | MMSNKPHLRPHEEEHHASRITRLLVAILIVGILALLIALELTGRVEFRGRLILLRGGRSTLTAVGH |
| Ga0209530_11462501 | 3300027692 | Forest Soil | MSNKPHLRPHQKKHASRITRLLVGILIVAVFALVIALEATGHIIFRGR |
| Ga0209274_100669032 | 3300027853 | Soil | MSNKPHLRPHQEKRHASQITRLLVGILIVAIFVLVIALELTGHIVFRGR |
| Ga0209693_103775652 | 3300027855 | Soil | MSNKPHLRPHQKKRQASKITGLLVAIFILAIFALAIALEATGHVVFRGR |
| Ga0209169_100030945 | 3300027879 | Soil | MMSNKPHLHPHKEEQHASRITRLLVAILVVGIIALLVALELTGRVEFRGRLILLRGGRSTLTAVSH |
| Ga0209068_104427862 | 3300027894 | Watersheds | MSNKPHLRPHQEKRHASEITRLLMAILILAIFVLVIALEVTGRVEFRGRLILLRGAAGC |
| Ga0209624_102576712 | 3300027895 | Forest Soil | MPFHQGNMMSNKPHLRPHQEERHASRITRLLVGILILAILILAIALEMTGHVVFRGR |
| Ga0209006_104153352 | 3300027908 | Forest Soil | MMSNKPHLRPHQEERHASRITRLLVGILILAILILAIALEMTGHVVFRGR |
| Ga0209006_111144482 | 3300027908 | Forest Soil | MMSNKPHRRPHEKRQQARKITRLLVAILIIAFFVAAIALEATGHVEFRGR |
| Ga0265353_10100991 | 3300028015 | Soil | MPFHQGNMMSNKPHLRPHQEERQASRTTRLFVAILILAVFILAFALELTGHVVFRG |
| Ga0308309_108557082 | 3300028906 | Soil | MSNKPHQRPHQEKRQSSQLTRLLVAIIIIAIFALVIALEATGHVIFRGR |
| Ga0311338_100341329 | 3300030007 | Palsa | MMSNKPHLRPHQKERRASRFSRLLVATLIIAFFALAIALEATGHVIFRGR |
| Ga0311355_111040322 | 3300030580 | Palsa | LRPHQKERRASRFSRLFVATLIIAFFALAIALEATGHIIFRGR |
| Ga0302311_101658252 | 3300030739 | Palsa | MSNKPHLRPHQKERRASRFSRLLVATLIIAFFALAIALEATGHVIFR |
| Ga0302307_104689292 | 3300031233 | Palsa | MSNKPHQRPHQKKRASRITRLLVWILIVGIFALVIALEATGHIIFRGRLNPVM |
| Ga0310686_1118713203 | 3300031708 | Soil | MSNKPHQRPHQKKRQTSQITRLLVAILIIAVLALAIALEATGHVVFRGR |
| Ga0310686_1131416632 | 3300031708 | Soil | MSNKAHLRPHQKNRQASRTIRLLVAILLIAIFALGVALAASGHVVTGRFLL |
| Ga0311301_101965291 | 3300032160 | Peatlands Soil | MMSNKPHLRPHQEERQASRITRLFVAILILAIFTLAIALELTGHVVFRGRLILLRGAAGC |
| Ga0335085_113697551 | 3300032770 | Soil | MSNKPHLRPHQEKRQASQITRLLVAILILALFALAIALETTGHVVFRGRLILLTATPSICCI |
| Ga0335079_115754632 | 3300032783 | Soil | PHQKTRQASQVTRLFVAILIVAIFALAITLEATGHVIFRGRLTGVGG |
| Ga0335078_103372182 | 3300032805 | Soil | MSNKPHLRPHQEKRQASQITRLLITIFVIAFFVLAIALEATGHVVFRGRLILGRRGRERP |
| Ga0335080_108713641 | 3300032828 | Soil | MSNKPHLRPHQKKRQASQITRLLVAILILAFFALAITLEATGHVVFRGRLI |
| Ga0335074_1000768613 | 3300032895 | Soil | MSNKPHLRPHQENQHASQMTRLLVAILIIAIFALAIALEATGHIVFRGR |
| Ga0335074_100220788 | 3300032895 | Soil | MSNKPHLRPHQKKRQASKITRLLVAIFIVAIFALVIALEATGHIVFRGR |
| Ga0335074_101926372 | 3300032895 | Soil | MIGWLPFREGNVMSNKPHLRPHQEIRHASRITRLLVAILVVGIFVLVIALEMTGHIIFRG |
| Ga0335074_106723322 | 3300032895 | Soil | MSNKPHQRPHQIQRHASRITKLLVAILIVSAFVLVLALEATGHIIFRGR |
| Ga0335075_112849152 | 3300032896 | Soil | MIQSLPFRERNMMSNKPHLRPHQKKRQASKITRLLVAIFIVAIFALVIALEATGHIVFRG |
| Ga0335075_117379061 | 3300032896 | Soil | GNVMSNKPHQRPHQKRRASRISRLLMAILIIAIFALVIALEATGHIVFRGRLILLRGR |
| Ga0335072_112885811 | 3300032898 | Soil | MSNKPHLRPHQEKRQASGFIRLLVAILVVAFFALAIALEATGHVIFRGRLILSSGVG |
| Ga0335083_100280965 | 3300032954 | Soil | MSNKPHLRPHQEKRQASQITRLLVAILILAFFALAIALETTGHVVFRGRLILLTATPSICCIGTAALLAAGRFS |
| Ga0335077_116109872 | 3300033158 | Soil | MSNKPHLRPHQKTRQASQVTRLFVAILIVAIFALAITLEATGHVIFRGRLTGVGG |
| Ga0335077_117876921 | 3300033158 | Soil | MSNKPHLRPHQEKRKASRITRLLMAILIIAFFVLAIALEATGHVVFRGRLLLGRGA |
| Ga0335077_120836951 | 3300033158 | Soil | MMSNKPHLRPHQEKRQASQTTRLLVAVLIIAIFALAIALEAT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |