NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103586

Metagenome / Metatranscriptome Family F103586

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103586
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 51 residues
Representative Sequence MNRRLFWKIFLPFWVAQAVLLGALYLRLHYRISSEHPWWIQPERREMPVLA
Number of Associated Samples 85
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 99.01 %
% of genes near scaffold ends (potentially truncated) 99.01 %
% of genes from short scaffolds (< 2000 bps) 84.16 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (80.198 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(20.792 % of family members)
Environment Ontology (ENVO) Unclassified
(27.723 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.485 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 56.86%    β-sheet: 0.00%    Coil/Unstructured: 43.14%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF00486Trans_reg_C 86.14
PF00873ACR_tran 5.94
PF13533Biotin_lipoyl_2 5.94
PF00092VWA 0.99
PF03544TonB_C 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms80.20 %
UnclassifiedrootN/A19.80 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001213|JGIcombinedJ13530_101867251Not Available552Open in IMG/M
3300003218|JGI26339J46600_10157009All Organisms → cellular organisms → Bacteria → Proteobacteria526Open in IMG/M
3300003368|JGI26340J50214_10088342All Organisms → cellular organisms → Bacteria → Proteobacteria805Open in IMG/M
3300003368|JGI26340J50214_10111104All Organisms → cellular organisms → Bacteria → Proteobacteria698Open in IMG/M
3300005542|Ga0070732_10175926All Organisms → cellular organisms → Bacteria → Proteobacteria1277Open in IMG/M
3300005614|Ga0068856_102212335All Organisms → cellular organisms → Bacteria → Proteobacteria559Open in IMG/M
3300005764|Ga0066903_101606216All Organisms → cellular organisms → Bacteria1233Open in IMG/M
3300005764|Ga0066903_104774895All Organisms → cellular organisms → Bacteria → Proteobacteria721Open in IMG/M
3300006052|Ga0075029_100350401All Organisms → cellular organisms → Bacteria951Open in IMG/M
3300006086|Ga0075019_11157744Not Available503Open in IMG/M
3300006176|Ga0070765_101696063All Organisms → cellular organisms → Bacteria → Proteobacteria593Open in IMG/M
3300006937|Ga0081243_1237502All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300009623|Ga0116133_1010990All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2241Open in IMG/M
3300009759|Ga0116101_1165567Not Available549Open in IMG/M
3300009762|Ga0116130_1000806All Organisms → cellular organisms → Bacteria19139Open in IMG/M
3300009826|Ga0123355_10480975All Organisms → cellular organisms → Bacteria → Proteobacteria1545Open in IMG/M
3300010048|Ga0126373_10134317All Organisms → cellular organisms → Bacteria2333Open in IMG/M
3300010341|Ga0074045_10848497Not Available577Open in IMG/M
3300010366|Ga0126379_11186638All Organisms → cellular organisms → Bacteria870Open in IMG/M
3300010379|Ga0136449_100407841All Organisms → cellular organisms → Bacteria2407Open in IMG/M
3300014158|Ga0181521_10455702All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300014162|Ga0181538_10005461All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae11413Open in IMG/M
3300014164|Ga0181532_10202895All Organisms → cellular organisms → Bacteria → Proteobacteria1161Open in IMG/M
3300014200|Ga0181526_10011042All Organisms → cellular organisms → Bacteria6199Open in IMG/M
3300014502|Ga0182021_11343442Not Available861Open in IMG/M
3300016294|Ga0182041_10763950All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300016371|Ga0182034_11950614Not Available519Open in IMG/M
3300016404|Ga0182037_10670318All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300016404|Ga0182037_11549156Not Available589Open in IMG/M
3300016404|Ga0182037_11991768Not Available521Open in IMG/M
3300016445|Ga0182038_11744490All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium561Open in IMG/M
3300017933|Ga0187801_10342181All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300018035|Ga0187875_10704454Not Available530Open in IMG/M
3300018037|Ga0187883_10185440All Organisms → cellular organisms → Bacteria1068Open in IMG/M
3300019082|Ga0187852_1010092All Organisms → cellular organisms → Bacteria5235Open in IMG/M
3300021401|Ga0210393_10113212All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2165Open in IMG/M
3300021401|Ga0210393_10858103All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300021404|Ga0210389_10581959All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300021407|Ga0210383_11447089All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium570Open in IMG/M
3300021433|Ga0210391_10195278All Organisms → cellular organisms → Bacteria1592Open in IMG/M
3300021474|Ga0210390_10123026All Organisms → cellular organisms → Bacteria2175Open in IMG/M
3300021560|Ga0126371_13231623Not Available551Open in IMG/M
3300024295|Ga0224556_1007131All Organisms → cellular organisms → Bacteria3012Open in IMG/M
3300025386|Ga0208585_1051077Not Available534Open in IMG/M
3300025457|Ga0208850_1011491All Organisms → cellular organisms → Bacteria1676Open in IMG/M
3300025509|Ga0208848_1118463Not Available522Open in IMG/M
3300025579|Ga0207927_1041671Not Available1233Open in IMG/M
3300025878|Ga0209584_10435668Not Available506Open in IMG/M
3300027035|Ga0207776_1032691All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium655Open in IMG/M
3300027042|Ga0207766_1007051All Organisms → cellular organisms → Bacteria → Proteobacteria1364Open in IMG/M
3300027609|Ga0209221_1178332All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300027783|Ga0209448_10070711All Organisms → cellular organisms → Bacteria1173Open in IMG/M
3300027812|Ga0209656_10129371All Organisms → cellular organisms → Bacteria1290Open in IMG/M
3300027812|Ga0209656_10197862All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300027812|Ga0209656_10330642All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300027824|Ga0209040_10355647All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300027824|Ga0209040_10404046All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300027825|Ga0209039_10207217All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium795Open in IMG/M
3300027867|Ga0209167_10069323All Organisms → cellular organisms → Bacteria → Proteobacteria1760Open in IMG/M
3300027902|Ga0209048_10683610All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium677Open in IMG/M
3300028748|Ga0302156_10236346All Organisms → cellular organisms → Bacteria842Open in IMG/M
3300029908|Ga0311341_10629162All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300030007|Ga0311338_11770000All Organisms → cellular organisms → Bacteria → Acidobacteria558Open in IMG/M
3300030051|Ga0302195_10220984All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300030618|Ga0311354_10085389All Organisms → cellular organisms → Bacteria3559Open in IMG/M
3300031446|Ga0170820_16210459All Organisms → cellular organisms → Bacteria1081Open in IMG/M
3300031524|Ga0302320_11481698All Organisms → cellular organisms → Bacteria → Proteobacteria669Open in IMG/M
3300031561|Ga0318528_10346803All Organisms → cellular organisms → Bacteria797Open in IMG/M
3300031572|Ga0318515_10634695All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300031715|Ga0307476_11019653All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300031736|Ga0318501_10422537All Organisms → cellular organisms → Bacteria → Proteobacteria722Open in IMG/M
3300031751|Ga0318494_10711582Not Available588Open in IMG/M
3300031765|Ga0318554_10228369All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300031768|Ga0318509_10210404All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300031846|Ga0318512_10324009All Organisms → cellular organisms → Bacteria → Proteobacteria768Open in IMG/M
3300031879|Ga0306919_10755089Not Available748Open in IMG/M
3300031879|Ga0306919_11049844All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium622Open in IMG/M
3300031893|Ga0318536_10501784Not Available610Open in IMG/M
3300031912|Ga0306921_10908474All Organisms → cellular organisms → Bacteria999Open in IMG/M
3300031912|Ga0306921_11218510All Organisms → cellular organisms → Bacteria → Proteobacteria837Open in IMG/M
3300031941|Ga0310912_10001330All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae13337Open in IMG/M
3300031941|Ga0310912_10046102All Organisms → cellular organisms → Bacteria3045Open in IMG/M
3300031941|Ga0310912_10228980All Organisms → cellular organisms → Bacteria → Proteobacteria1426Open in IMG/M
3300031946|Ga0310910_10074708All Organisms → cellular organisms → Bacteria2456Open in IMG/M
3300031954|Ga0306926_11087868Not Available946Open in IMG/M
3300032001|Ga0306922_10937125All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300032035|Ga0310911_10287075All Organisms → cellular organisms → Bacteria946Open in IMG/M
3300032035|Ga0310911_10933045Not Available500Open in IMG/M
3300032076|Ga0306924_11080830All Organisms → cellular organisms → Bacteria → Proteobacteria875Open in IMG/M
3300032782|Ga0335082_10879002All Organisms → cellular organisms → Bacteria → Proteobacteria759Open in IMG/M
3300032782|Ga0335082_10942738All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300032782|Ga0335082_10976779Not Available711Open in IMG/M
3300032805|Ga0335078_11542597All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300032892|Ga0335081_11043924All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300032893|Ga0335069_10530619All Organisms → cellular organisms → Bacteria → Proteobacteria1360Open in IMG/M
3300032898|Ga0335072_11755981All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300032954|Ga0335083_10088219All Organisms → cellular organisms → Bacteria3101Open in IMG/M
3300033004|Ga0335084_10780716All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300033158|Ga0335077_10129951All Organisms → cellular organisms → Bacteria2915Open in IMG/M
3300033158|Ga0335077_11715277All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium593Open in IMG/M
3300033289|Ga0310914_11014681All Organisms → cellular organisms → Bacteria → Proteobacteria730Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil20.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil12.87%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil10.89%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil9.90%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil4.95%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog3.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.96%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog3.96%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.97%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.97%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.98%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.98%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.98%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.99%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.99%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.99%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.99%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.99%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.99%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.99%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.99%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut0.99%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.99%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300003218Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1EnvironmentalOpen in IMG/M
3300003368Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006937Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A01 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300009762Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40EnvironmentalOpen in IMG/M
3300009826Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1Host-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300019082Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40EnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024295Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5EnvironmentalOpen in IMG/M
3300025386Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025457Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025509Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025579Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300027035Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)EnvironmentalOpen in IMG/M
3300027042Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)EnvironmentalOpen in IMG/M
3300027609Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300028748Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2EnvironmentalOpen in IMG/M
3300029908II_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030051Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2EnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ13530_10186725113300001213WetlandVNRRLFWKIFLPFWVAQALLLGALYLRLHIRLHSERPWWTQPSRQMMPQLGLDAA
JGI26339J46600_1015700913300003218Bog Forest SoilMNRRLFWKIFLPFWVAQAVLLGALYLRIHYRISSEHPWWIQPERREMPVLA
JGI26340J50214_1008834223300003368Bog Forest SoilMNRRLFWKIFLPFWVAQAVLLGALYLRIHYRISSEHPWWIQPERREMPVLANLAATTFEQQGQAA
JGI26340J50214_1011110413300003368Bog Forest SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLHYRLHSDNPWWVQPER
Ga0070732_1017592613300005542Surface SoilMSRRLFWKIFLPFWVAQALLLGALYLRVHYRISSEHPWWIQPERKQMPML
Ga0068856_10221233523300005614Corn RhizosphereMNRRLFWKIFLPFWVAQALLLGALYLRLHVRLHSERPWW
Ga0066903_10160621613300005764Tropical Forest SoilMSRRLFWKIFLPFWVAQALLLGLLYLRLHYRLHAENPWWVQPERRLVPNLADLAVQRYQQGGQP
Ga0066903_10477489513300005764Tropical Forest SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHTENPW
Ga0075029_10035040123300006052WatershedsMNRRLFWKIFLPFWVAQALLLGVLYMRLHYRLHSDNPWWVQPERRIVPALAELSVQR
Ga0075019_1115774413300006086WatershedsMNRRLFWKIFLPFWVAQALLLGMLYLRLHYRLHVENPWWVQPERRLVPTLADLAVRRYE
Ga0070765_10169606313300006176SoilMNRRLFWKIFLPFWLAQAVLLGALYLRIHYRISSEHPWWIQPERKEMPALANFAAQTFEQ
Ga0081243_123750223300006937Tropical Rainforest SoilMSRRLFWKIFLPFWVAQALLLGLLYLRLHYRLHAENPWWVQPE
Ga0116133_101099013300009623PeatlandMNRRLFWKIFLPFWVAQAILLGALYLRVHYRISSEHPWWIQPERREMPVLASLAA
Ga0116101_116556723300009759PeatlandMNRRLFWKIFLPFWVAQAILLGALYLRVHYRISSEHPWWIQPERREMPVLASLA
Ga0116130_1000806153300009762PeatlandMNRRLFWKIFLPFWLAQAVLLGALYLRVHYRISSEHPWWIQ
Ga0123355_1048097513300009826Termite GutMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHAENPWWVQPERRLIPSFADLAVERYEQGGQSAL
Ga0126373_1013431713300010048Tropical Forest SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHTENPWWVQPERRLIPNFADLAV
Ga0074045_1084849713300010341Bog Forest SoilMNRRLFWKIFLPFWVAQAVLLGALYMRIHYRISSEHPWWIQPERREMPVL
Ga0126379_1118663823300010366Tropical Forest SoilMNRRLFWKIFLPFWVAQALLLGLLYLRLFYRLHTDNPWWAQPERRLVPTLAGLAAQRYETGGQP
Ga0136449_10040784143300010379Peatlands SoilMNRRLFWKIFLPFWAAQALLLGALYLRVHYRISSEHPWWIQ
Ga0181521_1045570213300014158BogMNRRLFWKIFLPFWVAQAVLLGALYLRIHYRISSEHPWWIQPERREMPV
Ga0181538_1000546183300014162BogMNRRLFWKIFLPFWVAQAILLGALYLRVHYRITSEHPWWIQPERREMPVLA
Ga0181532_1020289523300014164BogMNRRLFWKIFLPFWVAQAMLLGALYLRLHYRISSEHPWWI*
Ga0181526_1001104213300014200BogMNRRLFWKIFLPFWVAQALLLGALYLRVHYRITSEH
Ga0182021_1134344213300014502FenMNRRLFWKIFLPFWLAQAVLLGALYLRIQHRISSEHPWWIQPERREMPVLADYAANVYEKQGQA
Ga0182041_1076395013300016294SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHAENPWWVQPERRLIPNFA
Ga0182034_1195061413300016371SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLQHRLHNDNPWWVQPERRLVPTLADLAVR
Ga0182037_1067031823300016404SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHAEN
Ga0182037_1154915613300016404SoilMNRRLFWKIFLPFWLAQALLLGLLYMRLHYRLHSENPWWVQPERRLIPNFADLA
Ga0182037_1199176823300016404SoilMNRRLFWKIFLPFWVAQALLFGLLYMRLFYRLHSENPWWAQPDRRILPALADLSVQ
Ga0182038_1174449023300016445SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHTENPWWVQPE
Ga0187801_1034218113300017933Freshwater SedimentMNRRLFWKIFLPFWLAQAVLLGALYLRIHYRISSEHPWWIQPERREMP
Ga0187875_1070445423300018035PeatlandMNRRLFWKIFLPFWVAQAILLGALYLRVHYRISSEHPWWIQPERREMPVLASLAAQRFEQAGP
Ga0187883_1018544013300018037PeatlandMNRRLFWKIFLPFWVAQAILLGALYLRVHYRISSEHPWWIQPERREMPVL
Ga0187852_101009213300019082PeatlandMNRRLFWKIFLPFWLAQAALLGALYLRIHYRISSEHPWWIQPERREMPVLAD
Ga0210393_1011321213300021401SoilMNRRLFWKIFLPFWVAQALLLGALYLRVHYRINSEHPWWIQP
Ga0210393_1085810313300021401SoilMNRRLFWKIFLPFWVAQALLLGALYLRVHYRINSEHP
Ga0210389_1058195913300021404SoilMNRRLFWKIFLPFWVAQALLLGALYLRVHYRINSEHPWWIQPERHEMPILADLAAKTFQEQG
Ga0210383_1144708923300021407SoilMNRRLFWKIFLPFWVAQAILLGALYLRVHYRISSEHPWWIQP
Ga0210391_1019527833300021433SoilMNRRLFWKIFLPFWLAQAVLLGALYLRIHYRISSEHPWWIQPERREM
Ga0210390_1012302633300021474SoilMNRRLFWKIFLPFWVAQALLLGALYLRVHYRINSEHPWWIQPERHEMPILADLAARTFREQGPSGL
Ga0126371_1323162323300021560Tropical Forest SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHSEN
Ga0224556_100713113300024295SoilMNRRLFWKIFLPFWVAQAILLGALYLRVHYRITSEHPWWIQPERREMPVLASLAAQRLEHDG
Ga0208585_105107723300025386Arctic Peat SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLHYRLHAENPWWVQPERRLVPTLADLAVRR
Ga0208850_101149113300025457Arctic Peat SoilMNRRLFWKIFLPFWVAQALLLGMLYLRLHYRLHAENPWWVQPERRLVPTL
Ga0208848_111846313300025509Arctic Peat SoilMNRRLFWKIFLPFWVAQALLLGVLYLRLQHRAHADNPWWVQPERRLVPTLADLAVRRYED
Ga0207927_104167113300025579Arctic Peat SoilMNRRLFWKIFLPFWLAQAVLLGALYLRIHYRISSEHPWWIQPERREMPVLADYAA
Ga0209584_1043566823300025878Arctic Peat SoilMNRRLFWKIFLPFWVAQALLLGMLYMRLHYRLHVDNPWWVQPEK
Ga0207776_103269113300027035Tropical Forest SoilMNRRLFWKIFLPFWMAQALLLGVLYMRLHYRLHVENPWWVQPERRLVPSLADLAVQRFEQYGEPGLRELL
Ga0207766_100705133300027042Tropical Forest SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHTENPWWVQPERRLIPNFAD
Ga0209221_117833223300027609Forest SoilMNRRLFWKIFLPFWVAQALLLGALYLRVHYRITAEHPWWIQPERKEMPALADMAAQ
Ga0209448_1007071123300027783Bog Forest SoilMNRRLFWKIFLPFWAAQAVLLGALYLRLHYRISSEHPWWIQPERREMPVLASLAATTFERQGQ
Ga0209656_1012937133300027812Bog Forest SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLHYRLHSDNPWWVQPERRLVPNLAD
Ga0209656_1019786213300027812Bog Forest SoilMNRRLFWKIFLPFWVAQALLLGVLYIRLQHRAHADNPWW
Ga0209656_1033064223300027812Bog Forest SoilMNRRLFWKIFLPFWVAQAVLLGALYLRLHYRISSEHPWWIQPERREMPVLA
Ga0209040_1035564713300027824Bog Forest SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLHYRLHSDNPWWVQPE
Ga0209040_1040404623300027824Bog Forest SoilMNRRLFWKIFLPFWVAQAVLLGALYLRLHYRISSEHPWWIQPERREMPVLAN
Ga0209039_1020721723300027825Bog Forest SoilMNRRLFWKIFLPFWVAQAVLLGALYLRIHYRISSEHPWWI
Ga0209167_1006932313300027867Surface SoilMSRRLFWKIFLPFWVAQAILLGALYLRVHYRISSEHPWWIQPERQQMPVLALLAAQTYEQ
Ga0209048_1068361013300027902Freshwater Lake SedimentMNRRLFWKIFLPFWVAQALLLGVLYMRLHYRLHAENPWWVQPERRLVPTLADLAVR
Ga0302156_1023634623300028748BogMSRRLFWKIFLPFWAAQAILLGALYLRVHYRISAEHP
Ga0311341_1062916213300029908BogMSRRLFWKIFLPFWAAQAILLGALYLRVHYRISAEHPWWIQPERREMPVLAD
Ga0311338_1177000013300030007PalsaMNRRLFWKIFLPFWVAQAILLGALYLRVHYRISAEHPWWIQPER
Ga0302195_1022098423300030051BogMSRRLFWKIFLPFWAAQAILLGALYLRVHYRISAEHPWWIQPERREMPVLADLAARR
Ga0311354_1008538913300030618PalsaMNRRLFWKIFLPFWVAQAILLGALYLRVHYRISSEHP
Ga0170820_1621045913300031446Forest SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLHYRLHSENPWWVQPERHLMPS
Ga0302320_1148169823300031524BogMNRRLFWKIFLPFWVAQAILLGALYLRVHYRISSEHPWWIQPERR
Ga0318528_1034680323300031561SoilMSRRLFWKIFLPFWVAQALLLGLLYLRLHYRLHAENPWWVQP
Ga0318515_1063469513300031572SoilMNRRLFWKIFLPFWVAQAVLLGALYIRLHYRLHSERPWWIQPERQVMPSLAKLAAQTYDEGQQPALRAT
Ga0307476_1101965323300031715Hardwood Forest SoilMSRRLFWKIFLPFWVAQALLLGALYLRVHYRINSE
Ga0318501_1042253713300031736SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLHHRLHVESPWWVQPEKRLVPT
Ga0318494_1071158213300031751SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLQHRLHNDNPWWVQPERRLVPTLADLAVRRYEQSGQQT
Ga0318554_1022836923300031765SoilMNRRLFWKIFLPFWVAQAVLLGALYIRLHYRLHSERPWWIQPERQ
Ga0318509_1021040423300031768SoilMNRRLFWKIFLPFWVAQAVLLGALYIRLHYRLHSERPWWIQPERQVMPSLAKLAAQTYDE
Ga0318512_1032400913300031846SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLHHRLHVESPWWVQPEKR
Ga0306919_1075508913300031879SoilMNRRLFWKIFLPFWVAQAVLLGALYIRLHYRLHSERP
Ga0306919_1104984413300031879SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLQHRLHNDNPWWVQPERRLVPTLADLAVRRY
Ga0318536_1050178423300031893SoilMSRRLFWKIFLPFWVAQALLLGLLYLRLHYRLHAENPWWVQPERRLVPNLADLAVQRYQQGGQPALRALL
Ga0306921_1090847413300031912SoilMNRRLFWKIFLPFWVAQALLLGMLYMRLHYRLHTENPWWVQPERRLIPNFADLAVE
Ga0306921_1121851023300031912SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHTENPWWVQPERRLIPNFADLAVERYEQGGQPAL
Ga0310912_10001330103300031941SoilMSRRLFWKIFLPFWVAQALLLGLLYLRLHYRLHAENPWWVQPERRLVPNLADLAVQRY
Ga0310912_1004610243300031941SoilMNRRLFWKIFLPFWVAQAVLLGLLYMRLHYRLHTENPW
Ga0310912_1022898013300031941SoilMNRRLFWKIFLPFWVAQAVLLGALYIRLHYRLHSERPWWI
Ga0310910_1007470813300031946SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHAENPWWVQPERRLIPNFADLAV
Ga0306926_1108786823300031954SoilMNRRLFWKIFLPFWAAQAVLLGALYLRLHYRITSEH
Ga0306922_1093712523300032001SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHTENPWWVQPERR
Ga0310911_1028707513300032035SoilMNRRLFWKIFLPFWVAQALLLGVLYMRLHHRLHVESPWWVQPEKRLVPTL
Ga0310911_1093304523300032035SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHAENPWWVQPERRLIPNFADLAVERY
Ga0306924_1108083023300032076SoilMNRRLFWKIFLPFWVAQAVLLGLLYMRLHYRLHTENPWWVQPERRLLPNLADLAVQRYELGGQAALRG
Ga0335082_1087900213300032782SoilMNRRLFWKIFLPFWVAQALLLGALYLRLHVRLHSERPWWVQPLRQ
Ga0335082_1094273813300032782SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHYRLHSENPWWVQPERRLIPNFADLAVERYEQ
Ga0335082_1097677923300032782SoilMNRRLFWKIFLPFWVAQALLLGALYLRIHVRLHSERPWWIQPSRQLM
Ga0335078_1154259723300032805SoilMSRRLFWKIFLPFWVAQALLLGALYLRVHYRINSEHPWWIQPERHQMPILADLAARTFQEQGPTG
Ga0335081_1104392423300032892SoilMNRRLFWKIFLPFWVAQALLLGLLYMRLHTRLHTENPWWVQPE
Ga0335069_1053061913300032893SoilMNRRLFWKIFLPFWVAQALLLGVLYLRLQHRFHVEN
Ga0335072_1175598113300032898SoilMNRRLFWKIFLPFWVAQALLLGALYLRVHYRISSEHPWWIQPERREMPVLANMAAQRYEEQGASG
Ga0335083_1008821943300032954SoilMSRRLFWKIFLPFWVAQALLLGALYLRVHYRINSEHPWWIQPERREMPVLA
Ga0335084_1078071623300033004SoilMNRRLFWKIFLPFWVAQALLLGALYLRVHYRITSEHPWWIQPERREMPVL
Ga0335077_1012995113300033158SoilMNRRLFWKIFLPFWVAQALLLGALYLRVHYRISSEHPWWIQPERR
Ga0335077_1171527723300033158SoilMTRPMSRRLFWKIFLPFWVAQALLLGALYLRVHYRISSEHPWWIQPERKEMPVLAEL
Ga0310914_1101468113300033289SoilMNRRLFWKIFLPFWVAQALLLGALYLRLHVRLHSERPWWIQPSRQF


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