Metagenome / Metatranscriptome Family F103579

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103579
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	73 residues
Representative Sequence	MWNRLLKSVEVLAALLAFSCVTFAQTYGTPGYSPGAWKPDELPKELSKPTPFNPHDLSGVWSTPTTAGYFER
Number of Associated Samples	86
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.00 %
% of genes near scaffold ends (potentially truncated)	96.04 %
% of genes from short scaffolds (< 2000 bps)	85.15 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.069 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.782 % of family members)
Environment Ontology (ENVO)	Unclassified (23.762 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.515 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.00% β-sheet: 0.00% Coil/Unstructured: 74.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF12728	HTH_17	2.97
PF03459	TOBE	1.98
PF13360	PQQ_2	1.98
PF00905	Transpeptidase	1.98
PF09957	VapB_antitoxin	0.99
PF00291	PALP	0.99
PF07927	HicA_toxin	0.99
PF01384	PHO4	0.99
PF13518	HTH_28	0.99
PF00034	Cytochrom_C	0.99
PF10047	DUF2281	0.99
PF01850	PIN	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.99
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.07 %
Unclassified	root	N/A	6.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.07 %
Unclassified	root	N/A	6.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.07 %
Unclassified	root	N/A	6.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	71.29 %
Unclassified	root	N/A	6.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	67.33 %
Unclassified	root	N/A	6.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	67.33 %
Unclassified	root	N/A	6.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10265032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300004100\|Ga0058904_1411905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300005167\|Ga0066672_10007990	All Organisms → cellular organisms → Bacteria	4888	Open in IMG/M
3300005602\|Ga0070762_10290371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300006050\|Ga0075028_100050682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1995	Open in IMG/M
3300006176\|Ga0070765_102119432	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300006794\|Ga0066658_10032105	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300007265\|Ga0099794_10269394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300009089\|Ga0099828_11350388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300010379\|Ga0136449_103111658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300011120\|Ga0150983_13145428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300011120\|Ga0150983_13267797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300011120\|Ga0150983_14430571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300012096\|Ga0137389_11826256	Not Available	504	Open in IMG/M
3300012205\|Ga0137362_10731611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300012208\|Ga0137376_10971908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300012209\|Ga0137379_10311891	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300012362\|Ga0137361_10061761	All Organisms → cellular organisms → Bacteria	3137	Open in IMG/M
3300012363\|Ga0137390_11446248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300012685\|Ga0137397_10337110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1124	Open in IMG/M
3300012917\|Ga0137395_10210149	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300012923\|Ga0137359_10055464	All Organisms → cellular organisms → Bacteria	3449	Open in IMG/M
3300012925\|Ga0137419_11772869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300012929\|Ga0137404_11509319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300012930\|Ga0137407_11217110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300014156\|Ga0181518_10583490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300014501\|Ga0182024_10043689	All Organisms → cellular organisms → Bacteria	7278	Open in IMG/M
3300015052\|Ga0137411_1288757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300015054\|Ga0137420_1162950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300015054\|Ga0137420_1399991	All Organisms → cellular organisms → Bacteria	3407	Open in IMG/M
3300017927\|Ga0187824_10183271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300017930\|Ga0187825_10010807	All Organisms → cellular organisms → Bacteria	3056	Open in IMG/M
3300017930\|Ga0187825_10413080	Not Available	520	Open in IMG/M
3300017932\|Ga0187814_10199290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300017943\|Ga0187819_10507885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300017943\|Ga0187819_10640474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300017955\|Ga0187817_10341335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300017994\|Ga0187822_10037692	All Organisms → cellular organisms → Bacteria → Acidobacteria	1315	Open in IMG/M
3300017994\|Ga0187822_10105207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	866	Open in IMG/M
3300017994\|Ga0187822_10395429	Not Available	508	Open in IMG/M
3300018006\|Ga0187804_10181619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300018012\|Ga0187810_10171439	All Organisms → cellular organisms → Bacteria → Acidobacteria	876	Open in IMG/M
3300018012\|Ga0187810_10258818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300018027\|Ga0184605_10220528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	861	Open in IMG/M
3300019786\|Ga0182025_1023787	All Organisms → cellular organisms → Bacteria → Acidobacteria	984	Open in IMG/M
3300020580\|Ga0210403_10550140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300020582\|Ga0210395_10074380	All Organisms → cellular organisms → Bacteria → Acidobacteria	2501	Open in IMG/M
3300021086\|Ga0179596_10267077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300021181\|Ga0210388_11242734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300021402\|Ga0210385_11507688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300021406\|Ga0210386_10220844	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300021420\|Ga0210394_11624687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300021432\|Ga0210384_11236476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300021432\|Ga0210384_11596137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300021475\|Ga0210392_10593010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300021477\|Ga0210398_10296547	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300021559\|Ga0210409_10117379	All Organisms → cellular organisms → Bacteria	2448	Open in IMG/M
3300021559\|Ga0210409_11478905	Not Available	555	Open in IMG/M
3300022511\|Ga0242651_1044132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300022712\|Ga0242653_1047201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300022721\|Ga0242666_1085979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300022722\|Ga0242657_1047563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	931	Open in IMG/M
3300022722\|Ga0242657_1088367	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300022722\|Ga0242657_1141364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300022724\|Ga0242665_10175447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300022724\|Ga0242665_10261303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300025922\|Ga0207646_11943679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300026325\|Ga0209152_10430031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300026335\|Ga0209804_1136248	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300026359\|Ga0257163_1040800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300026557\|Ga0179587_11199051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300027371\|Ga0209418_1096053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300027388\|Ga0208995_1091858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300027587\|Ga0209220_1036672	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300027591\|Ga0209733_1163054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300027660\|Ga0209736_1020148	All Organisms → cellular organisms → Bacteria	2048	Open in IMG/M
3300027663\|Ga0208990_1065149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300027725\|Ga0209178_1013627	All Organisms → cellular organisms → Bacteria	2547	Open in IMG/M
3300027765\|Ga0209073_10306382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300027842\|Ga0209580_10342407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300027862\|Ga0209701_10227218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1101	Open in IMG/M
3300027875\|Ga0209283_10602916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300027882\|Ga0209590_11054402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300027905\|Ga0209415_10121302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2758	Open in IMG/M
3300027986\|Ga0209168_10204869	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300030862\|Ga0265753_1091417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300031022\|Ga0138301_1411582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300031122\|Ga0170822_10096363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300031446\|Ga0170820_13213821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300031708\|Ga0310686_105948685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300031715\|Ga0307476_11156442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300031720\|Ga0307469_12343433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300031962\|Ga0307479_10087413	All Organisms → cellular organisms → Bacteria	3020	Open in IMG/M
3300031962\|Ga0307479_10151218	All Organisms → cellular organisms → Bacteria	2277	Open in IMG/M
3300032160\|Ga0311301_11933486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300032180\|Ga0307471_102037838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300032205\|Ga0307472_100996190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	785	Open in IMG/M
3300032783\|Ga0335079_10304885	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300032805\|Ga0335078_12084695	Not Available	603	Open in IMG/M
3300032954\|Ga0335083_11171425	Not Available	597	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.16%
Aquatic	Environmental → Aquatic	15.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.16%
Freshwater	Environmental → Aquatic → Freshwater	13.86%
Sediment	Environmental → Aquatic → Sediment	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.35%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.86%
Loam	Environmental → Terrestrial → Soil → Loam	13.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.70%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	12.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	12.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004100	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF244 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022511	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_102650322	3300001867	Forest Soil	MRNRFIDLLATSAMLLAFSAMAFAQTYGTKGYSPGAWKPEELPKDLSRPKPYNPRDLVGVWSSPTKAGYFERHA
Ga0058904_14119052	3300004100	Forest Soil	MRNRFMDLLATFAMMLAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPKPYN
Ga0066672_100079907	3300005167	Soil	MRNRFPDLFAVLAILLAISTVAFAQTYGTKGYAPGAWKPDELSKDLSRPKPYNAHDLSGVWSSPTKAGYFER
Ga0070762_102903714	3300005602	Soil	MRNRLLNSVRILAALLAFSCVAFAQTYGTPGYSPGAWKPDELPRDLSKAKPFNPHDLSGVWSTPTT
Ga0075028_1000506825	3300006050	Watersheds	MWKRLLKSVQVLAALLAFSCVTFAQTYGTPGYSPGAWKPDELPKELSKPKPFNAHDLSGMWSTPTT
Ga0070765_1021194322	3300006176	Soil	MRNRLLNSVQALAALLAFSGFAFAQTYGTGGYSPGAWKPDELPKELSKPKTFNPHDLSGMWSTPTTPGYFERHSLDDKW
Ga0066658_100321051	3300006794	Soil	MRNRFMDLFAILATVLAISTVTFAQTYGTKGYAPGTWKPDELPKDLSKPKPFNAHDLPGV
Ga0099794_102693942	3300007265	Vadose Zone Soil	MRNQFTFSIVVPVALAACSCAAFAQTYGTKGYSPGAWKPDELPKGLSNPTPFDPHNLSGVWSMPTKPGYFERHSLNDKP
Ga0099828_113503882	3300009089	Vadose Zone Soil	MQNRLMSSVVVLLALLMCSCVTFAQTYGTKGYAPGAWKSDELPKGLSNPKPFDSHNLAGVWSMPTRPGYFERHSLN
Ga0136449_1031116582	3300010379	Peatlands Soil	MWNRLLKSVEILTAALAFSCIAFGQTYGTPGNSPGAWKPEELPKGISKPKPFNPRDLSGVWSTPTTPGYFK
Ga0150983_131454282	3300011120	Forest Soil	MDLLATFAMVLAFSAITFAQTYGTKGYSPGAWKPEELPKDLSKPKPYNPHDFVGVWSSP
Ga0150983_132677972	3300011120	Forest Soil	MDLLATFAMVLAFSAVTFAQTYGTKGYSPGAWKPEELPKDLSKPKPY
Ga0150983_144305712	3300011120	Forest Soil	MRNRLMDLFVMLAMAVAFSAVAFGQTYGTKGYSPGAWKPEELPKDLAKPKPYNAHDMNGVWSS
Ga0137389_118262562	3300012096	Vadose Zone Soil	MMALLAFSCVAFAQTYGTGGYSPGAWKPAELPNELAKPKPFNAHDLSGMWSTPTTAGYFERHSLDDKWMEVKDKKVPPQM
Ga0137362_107316112	3300012205	Vadose Zone Soil	MRNQFTFSIVAPVALVACSCAAFAQTYGTKGYSPGAWKPDELPKGLSNPTPFDPHNLSGVWSMPTKPGYFER
Ga0137376_109719081	3300012208	Vadose Zone Soil	MRNRFTFSIVVPVALVACSCVTFAQTYGTKGYSPGAWKPNELPKGLSNPAHFDPHNLSGVWSMPTKPGYFERHSLNDKPIKIAPNVPPQM
Ga0137379_103118913	3300012209	Vadose Zone Soil	MRNRFMSSVAVLLVLLACSCVTFAQTYGTKGYSPGAWKPEELPKNLSNPKPFDPHNLTGVWSMPTKPGYFERHSLNDK
Ga0137361_100617611	3300012362	Vadose Zone Soil	MFSIVVPVALAACSCAAFAQTYGTKGYSPGAWKPDELAKGLSNPTPFDPHNLSGVWSMPTKPGYFERHSLNDKPIK
Ga0137390_114462481	3300012363	Vadose Zone Soil	MRNRFMSSAAALLVLLVCSCVTFAQTYGTKGYSPGAWKPDELPSGLSNPKPFDLHNLSGLWSMPTKPGYFERHSLNDKPIKIAPNVPP
Ga0137397_103371104	3300012685	Vadose Zone Soil	MSSIVVLLIFLAGSCATFAQTYGTKGYAPGTWKPEELPKGLSDPKPFDPHNLSGVWSMPTSTGYFTRHSLNDKPIKIGPE
Ga0137395_102101493	3300012917	Vadose Zone Soil	MMALLAFSCVAFAQTYGTGGYSPGAWKPDELPKELSKPKPFNAHDLSGMWSTPTTAGYFERHSLDDKWIDVKDKKVPPQMRS
Ga0137359_100554646	3300012923	Vadose Zone Soil	MFSIVVPVALAACSCAAFAQTYGTKGYSPGAWKPDELAKGLSNPTPFDPHNLSGVWSMPTKPGYFERHSLNDKPIKIAPNV
Ga0137419_117728692	3300012925	Vadose Zone Soil	MSSVAILLGLLACSHVTCAQTYGTKGYSPGAWKPDELPKGLSNPKPFDAHNLSGVWSMPTKPGYFERHSLNDKAI
Ga0137404_115093192	3300012929	Vadose Zone Soil	MRNRFMFSIVVPVALAACSCAAFAQTYGTKGYSPGAWKPDELPKGLSNPTPFDPHNLSGVWSMPTKPGYFERHSLNDKPI
Ga0137407_112171101	3300012930	Vadose Zone Soil	MRNRFQSLAAALLALLACSCVTLAQTYGTKGYSPGAWKPDELPKGVSNPAHFDPHNLSGVWSMPTKPGY
Ga0181518_105834902	3300014156	Bog	MRNRWNDSLAVIAAILAFSAVSFAQTYGTPGYAPGTWKRQEVPKDLSKPKPYNPRDFSGVWS
Ga0182024_100436898	3300014501	Permafrost	MSSIAVLVALLAFSSVKFGQTYGTKGYSPGAWPPADMPKSLSNPKPFDPRDLSAVWSMPTKAGYFERHSLNDRVVGRKG*
Ga0137411_12887572	3300015052	Vadose Zone Soil	MRNRFMFSIVVPVALVACSCAAFAQTYGTKGYSPGAWKPDELPKGLSNPAPFDPHNL
Ga0137420_11629502	3300015054	Vadose Zone Soil	MRNQFTFSIVAPVALVACSCAAFAQTYGTKGYSPGAWKPDELAKGLSNPTPFDPHNLSGVWSMPTKPGYFERHSLNDKPIKIAPNVPPQM
Ga0137420_13999911	3300015054	Vadose Zone Soil	MRNRFTFSIVVPVTLVAWSCAAFAQTYGTKGYSPGAWKPDELPKGLSNPAPFDPHNLSGVWSMPTNPAISKGIP*
Ga0187824_101832712	3300017927	Freshwater Sediment	MRSGIVHSIQVVAALLAFSCAALAQTYGTPGYSPGAWKPDELPKELSKPKPYDPHDLSGVWSTPTTPGYFERHSLNDKWVDTNDKKV
Ga0187825_100108075	3300017930	Freshwater Sediment	MRSGIVHSIQVVAALLAFSCAALAQTYGTPGYSPGAWKPDELPKELSKPKPYDPHDLSGVWST
Ga0187825_104130801	3300017930	Freshwater Sediment	MRNRLSDSFAVIAAMLAFSAVTFAQTYGTPGYAPGTWKPQEIPKDLAKPKPYNAHDLSGVWSSPTRAGYFERHALNDK
Ga0187814_101992902	3300017932	Freshwater Sediment	MRKRLLNSVAVLAALLAIPCFAFAQTYGTDGYAPGAWKPDELPKELSKPKPYDPHDLSGVWSTPTTKGYFERHSLNDKWIDTKDKKIPPQMRSN
Ga0187819_105078852	3300017943	Freshwater Sediment	MRNRLLNSVEVLVALLAFSCVTFAQTYGTEGYSPGAWKPNELPKELSKPKPFNPHDLSGVWSTPTTPGYFERHSLDDKWVDVKDRK
Ga0187819_106404742	3300017943	Freshwater Sediment	MRNRLLNSVEVFVALLAFSCVTFGQTYGTEGYSPGAWKPNELPKELSKPKPFNPHDLSGVWSTP
Ga0187817_103413351	3300017955	Freshwater Sediment	MRNWLLNSVAVLAALLAIPCFTFAQTYGTDGYAPGAWKPDELPKELSKPKPYDPHDLSGVWSTPTTK
Ga0187822_100376921	3300017994	Freshwater Sediment	MRNRLSDSFAVIAAMLAFSAVTFAQTYGTPGYAPGTWKPQEIPKDLAKPKPYNAHDLSGVWSSPTRAGY
Ga0187822_101052072	3300017994	Freshwater Sediment	MWNRLLKSFEVLAALLAFSCVTFAQTYGTPGYSPGAWKPDELPKELSKPKPFNAHDLSGVWSTPTTAGYFERHSLNDKWKD
Ga0187822_103954292	3300017994	Freshwater Sediment	MRNRLSQSVLPLGALLAFSCTAFAQTYGTPGYAPGAWKPDELPKELSKPRPYNPHDLSGVWSTPTTAGYFERHSLNDKWVVTNDKKVPPQMRSNAIP
Ga0187804_101816192	3300018006	Freshwater Sediment	MRNRLLNSVEVFVALLAFSCVTFGQTYGTEGYSPGAWKPNELPKELSKPKPFNPHDLSGVWSTPTTPGYFERHS
Ga0187810_101714391	3300018012	Freshwater Sediment	MGNRLLNSAAVLAALLSFSCIASAQTYGTPGYSPGAWKPDELPKELSKPKPFNPRDLSGVWSTPTTPGYFERHS
Ga0187810_102588182	3300018012	Freshwater Sediment	MRNRLLNSVEVLVALLAFSCVTFGQTYGTEGYSPGAWKPNELPKELSKPKPFNPHDLSGVWSTP
Ga0184605_102205282	3300018027	Groundwater Sediment	MRDRYVSSIVVLLTLLACSSVMFAQTYGTKGYAPGTWKPEELPKALSDPKPFNAHDLSAVWSMPTKAGYF
Ga0182025_10237873	3300019786	Permafrost	NRVMSSIAVPVALLAFSSVKFGQTYGTKGYSPGAWPPADMPKSLSNPKPFDPRDLSAVWSMPTKAGYFERHSLNDRVVGRKG
Ga0210403_105501401	3300020580	Soil	MRTYFRNAILIGAATLGFSFAAFAQTYGTKDYAPGAWKPEELPKNLATPKPYNPHDLSGVWSTPTTAGYFERHSLNDKWIDTKDKKIP
Ga0210395_100743801	3300020582	Soil	MWNRLLKSVEVLAALLAFSCVTFAQTYGTPGYSPGAWKPDELPKELSKPTPFNPHDLSGVWSTPTTAGYFERHSLNDKWRDVKDKKIPPQMRS
Ga0179596_102670773	3300021086	Vadose Zone Soil	MRNRFISSVAVLLIFLAFSRATFAQTYGTKGYAPGTWKPEELPKGLSDPKPFDPHNLSGV
Ga0210388_112427341	3300021181	Soil	MRNRFMDLLATFAMMLAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPKPYNSHDFGGVWSSPTRAGYFER
Ga0210385_115076881	3300021402	Soil	MWNRLLKSVEVLAALLAFSCVTFAQTYGTPGYSPGAWKPDELPKELSKPKPFNAHDLSGVWSTPT
Ga0210386_102208443	3300021406	Soil	MRNRLLKSVEVLAATLAFSSVAFGQTYGTPGYSPGAWKPEELPKELSKPKTFNPHDLSGVWSTPTTAGYFERHSLDDKWVDINDKKVPP
Ga0210394_116246871	3300021420	Soil	MRIRFHFSAAVLLLLLVCASVSFAQTYGTNGYSPGAWKPDELPKGLSNPKPFDPHNLSGVWSMPTKPGYFERHSLNDKPIKIAANVPPQMGS
Ga0210384_112364761	3300021432	Soil	MWNRLLKSVEVLAALLAFSCVTFAQTYGTPGYSPGAWKPDELPKELSKPTPFNPHDLSGVWSTPTTAGYFER
Ga0210384_115961371	3300021432	Soil	MRNCFRASLAILAVALVSCCPTFAQTYGTKGYAPGTWKPEELPKDLAKPKAFNAHDLSGVWSMPTKPGYFERHSL
Ga0210392_105930102	3300021475	Soil	MRNRFMDLLATFAMMLAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPK
Ga0210398_102965471	3300021477	Soil	MRKQFLNAFLIGMMVSGFSSAAFAQTYGTKGYSPGAWKPEELPKELSSPKPYNPHDLSGVWST
Ga0210409_101173791	3300021559	Soil	MWIRLLKSVQVLAAVLAFSCIAFGQTYGTPGYSPGAWKPEELPKELSKPKPFNPHDLSGVWSTPTTPGYFERHSLDDKWI
Ga0210409_114789051	3300021559	Soil	MRNQLLNSVQVLVALLAFSCVTFAQTYGTGGYSPGAWKPEELPKELSKAKPFNAHDLSGMWSTPTTPGYFERHSLDDKWMDIKD
Ga0242651_10441322	3300022511	Soil	MRNRFMDLLATFAMILAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPKPYNSHDFGGVWSSPTRAGYFERHALN
Ga0242653_10472011	3300022712	Soil	MRNRFMDLLATFAMMLAFSAVTFAQTYGTKGYSPGAWKPAELPKDLSKPKPYNSHDFVGVWSSPTKAGYFERH
Ga0242666_10859792	3300022721	Soil	MRNRLSDSLLVIAAMLAFSAVTFAQTYGTPGYAPGTWKPQEVPKDLSKPKPYNARDFSGVWSS
Ga0242657_10475633	3300022722	Soil	MWNRLLKSVEVLAALLAFSCVTFAQTYGTPGYSPGAWKPDELPKELSNPKPFNSHDLSGVWSTPTTAGYFERHSLN
Ga0242657_10883672	3300022722	Soil	MRNCFKASLGILAVALVSCFPAFAQTYGTKGYAPGTWKPEELPKDLAKPKPFSPHDLSGVWSMPTKPGYFERPCKAQAL
Ga0242657_11413641	3300022722	Soil	MRNRFMDLLATFAMVLAFSAVTFAQTYGTKGYSPGAWQPEELPKDLSKPKPYNSHDFVGVWSS
Ga0242665_101754472	3300022724	Soil	MRNRFMDLLATFAMVLAFSSVTFAQTYGTKGYSPGAWKPEELPKDLSKPKPYNPHDFVGVWSSPTKAGYFE
Ga0242665_102613032	3300022724	Soil	MRNRFLDGLSIVAMVLAFSAISFAQTYGTKGYSPGAWKPEELPKDLSKPKPYN
Ga0207646_119436792	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRNHFMSSMMLLLAGLAFACVTFAQTYGTKGYAPGAWKPDELPKDLAKPKPFDPHNLSGVWSTPTKGFE
Ga0209152_104300312	3300026325	Soil	MDLFAILATVLAISTVTFAQTYGTKGYAPGTWKPDELPKDLSKPKPFNAHD
Ga0209804_11362481	3300026335	Soil	MRNRFMDLFAILATVLAISTVTFAQTYGTKGYAPGTWKPDELPKDLSKPKPFNAHDLSGVWSSPTKAGYFERHALNDKWLDIK
Ga0257163_10408001	3300026359	Soil	MRNRFMFSIVVPVALAACSCAAFAQTYGTKGYSPGAWKPDELAKGLSNPTPFDPHNLSGVWSMPTKPGYFERHSLNDKPIR
Ga0179587_111990511	3300026557	Vadose Zone Soil	MRNRFMSSVVVLLIFLAFSCAAFAQTYGTKGYAPGTWKPEELPKGLSDPKPFDPHNLSGVWSMPT
Ga0209418_10960531	3300027371	Forest Soil	MRNRFMDLLATFAMLLAFSAVTFAQTYGTRGYSPGAWKPEELPKDLSKPKPYNPHDLVGVWSSPTK
Ga0208995_10918582	3300027388	Forest Soil	MRNRFMFSIVVRVALVACSCAAFAQTYGTKGYSPGAWKPDELPKGLSNPAHFDPHNLSGVWSMPTKPGYFERH
Ga0209220_10366721	3300027587	Forest Soil	MRNRFMSSGAVLLALLASSCVTFAQTYGTKGYSPGAWKPDELPKGLSNPKPFDSHNLAGVWSMPTKPGYFERHSLNDKPIKIAPNVP
Ga0209733_11630542	3300027591	Forest Soil	MRNRVMDLLAISAMMLALSAVTFAQTYGTRGYSPGAWKPEELPRELAKPKPFDPHNLSGVWSMPTKGFEKHSLTSKPLALEHVAN
Ga0209736_10201483	3300027660	Forest Soil	MRNRFMSSVAVLLVLMASSCVTFAQTYGTKGYSPGTWKPDELPKGLSNPKPFDPHNLSGVWSMPTKPGYFERHSLNDKPIKIGPNVPPQM
Ga0208990_10651493	3300027663	Forest Soil	MRNQFTFSIVAPVALVACSCAAFAQTYGTKGYSPGAWKPDELPKGLSNPAHFDPHNLSGVWSMPTKPGYFER
Ga0209178_10136274	3300027725	Agricultural Soil	MRNRLIDLLALPAVALAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPKPYNPHDFA
Ga0209073_103063822	3300027765	Agricultural Soil	MRNRLIDLLALPAVALAFSAVTFAQTYGTKGYSPGAWKPDELPKELSKPKPYNPHDLAGVWSSPTRAGYFERHSLNDKWLDIK
Ga0209580_103424072	3300027842	Surface Soil	MRNRFMDLLATFAMTLAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPKPYNPHD
Ga0209701_102272182	3300027862	Vadose Zone Soil	MRNRFMSSVAVLLVLLACSCVTFAQTYGTKGYSPGAWKPEELPKNLSNPKPFDPHSLSGVWSMPTKPGYFERHSL
Ga0209283_106029162	3300027875	Vadose Zone Soil	MRNRFMSSVAVLLVLLACSCVTFAQTYGTKGYSPGAWKPDEVPKNLSNPKPFDAHNLSGVWSMPTKPGYFERHSLNDKPIKIAPNVPPQMGSDAYP
Ga0209590_110544021	3300027882	Vadose Zone Soil	MRNRFMSSVAVLLVLLACSCVTFAQTYGTKGYSPGAWKPEELPKNLSNPKPFDPHNLSGVWS
Ga0209415_101213021	3300027905	Peatlands Soil	MWNRLLKSVEVLAALLALSCITFAQTYGTPGYSPGAWKPDELPKELSKPKPFNPHDLSGVWSTPTTAGYFERHSLNDKWREVNDKKIPPQM
Ga0209415_106045421	3300027905	Peatlands Soil	MWNRLLKSVEVLVALLAFSCVTFAQTYGTGGYSPGAWKPEELPKQLSTPKPFNAHDLSGV
Ga0209168_102048691	3300027986	Surface Soil	MRNRFMDLLAILAMVLAFSTVTFAQTYGTKGYSPGAWKPEELPKDLSKPKPYNPHDLSGVWSSPTRAG
Ga0265753_10914172	3300030862	Soil	MWNRLLKSVEVLAALLAFSCVTFAQTYGTPGYSPGAWKPDELPKELSKPTPFNPHDLSGVWSTPTTAGYFERHSLNDKWRDVKDK
Ga0138301_14115821	3300031022	Soil	MRNRFMDLLATFAMMLAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPKPYNSHD
Ga0170822_100963632	3300031122	Forest Soil	MRNRFMDLLATFAMMLAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPKPYNSHDFGGKIE
Ga0170820_132138212	3300031446	Forest Soil	MRNRFMDLLATFAMMLAFSAVTFAQTYGTKGYSPGAWKPEELPKELSKPKPYNSHDFGGVWSSPTRAGYFERHA
Ga0310686_1059486852	3300031708	Soil	MRNRFMDLLATFAMMLAFSAVTFAQTYGTRGYSPGAWKPEELPKDLSKPKPYNPHDFVGV
Ga0307476_111564421	3300031715	Hardwood Forest Soil	MWNRFLNSTLLLAAILEFSCIAFAQTYGTSGYSPGAWKPDELPKELSQPKPFNAHDLSGVWSTPTTPGYFERHSLDDKWIDTTDKKVPPQ
Ga0307469_123434332	3300031720	Hardwood Forest Soil	MRNYLMSSMMPLVAGLAFACVTLAQTYGTKGYAPGAWKPDELPKDLAKPKPFDPHNLSGVWSMPTRGFEKHSLTSKQLDIK
Ga0307479_100874135	3300031962	Hardwood Forest Soil	MRNRFLDGLSIVAMVLAFSAISFAQTYGTKGYSPGAWKPEELPKDLSKPKPYNPHDLNGVWSSPTRSGYFERHA
Ga0307479_101512181	3300031962	Hardwood Forest Soil	MRNRVLNSVQILVALLAFSCISFAQTYGTPGYSPGAWKPDELPKELSKTKPFNPHDLSGMWSTPTTPGYFERHSLDDKWIDTKDRKVPPQ
Ga0311301_119334862	3300032160	Peatlands Soil	MRNYFFNTILIVLALTGFSRAALAQTYGTKGYSPGAWKPDELPKEVSSPKPFNPHDLSG
Ga0307471_1020378381	3300032180	Hardwood Forest Soil	MQNRLMSSVVVLLALLACSSVTFAQTYGTKGYAPGAWKPDELPKSLANPKPFDPHNLSGVWSMPTK
Ga0307472_1009961901	3300032205	Hardwood Forest Soil	MWSRLLYSVQILVALLAFSCAAFAQTYGTPGYSPGAWKPDELPKELSKPKPFNAHDLSGVWSTPT
Ga0335079_103048851	3300032783	Soil	MRNRLLNSAVILAALPVFSCLAFAQTYGTPGYSPGAWKPDELPKELSTPKPFNPHDLSGVWSTP
Ga0335078_120846951	3300032805	Soil	MRYRWNESFAVIAAILAFSAISFAQTYGTPGYAPGTWKPQEIPKDLSKAKPYDA
Ga0335083_111714252	3300032954	Soil	MRNRWNDSLAVIAAILAFSAVSFAQTYGTPGYAPGTWKPQDVPKDLSKPKPDNPRDFSGVWSSPTKAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103579

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences