Metagenome / Metatranscriptome Family F103537

Basic Information
Family ID	F103537
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	94 residues
Representative Sequence	LRFGSKLEIMPFVLRGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Number of Associated Samples	96
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.812 % of family members)
Environment Ontology (ENVO)	Unclassified (36.634 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.485 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128. 1F14TC_1002373972 2JGI11643J11755_116610111 3JGI11643J12802_111310391 4JGI24033J26618_10028685 5JGI26129J50193_10062913 6JGI26145J50221_10001626 7JGI26134J50242_1009951 8JGI26133J50247_1014001 9JGI26138J51218_1042402 10Ga0055468_100085703 11Ga0055467_100008154 12Ga0069718_112623912 13Ga0066676_100139094 14Ga0065705_100128521 15Ga0070670_1001472824 16Ga0070677_100700881 17Ga0070680_1000166094 18Ga0070691_100575783 19Ga0070668_1003085983 20Ga0070669_1009748882 21Ga0070705_1000433352 22Ga0070694_1001523692 23Ga0070708_1014144551 24Ga0066686_100702113 25Ga0070663_1006722153 26Ga0070662_1004703751 27Ga0070681_100500537 28Ga0068867_1021885752 29Ga0070696_1017623541 30Ga0068866_100708443 31Ga0068862_1027717171 32Ga0075422_100049812 33Ga0075431_1001367143 34Ga0114129_111617501 35Ga0134086_102367372 36Ga0105239_104727301 37Ga0157304_10048472 38Ga0157281_10224741 39Ga0157300_10029134 40Ga0157287_11252371 41Ga0157305_100092361 42Ga0157293_100005854 43Ga0157292_100424271 44Ga0157291_101591542 45Ga0157282_102158872 46Ga0157296_100450132 47Ga0157283_102268462 48Ga0157290_101952411 49Ga0157308_103089131 50Ga0157301_100639682 51Ga0157302_104154811 52Ga0157373_106151213 53Ga0163163_122284212 54Ga0157377_111008031 55Ga0173483_105940941 56Ga0173483_108084471 57Ga0132258_102769123 58Ga0173481_100618684 59Ga0173482_100058502 60Ga0247753_10414022 61Ga0247745_10234932 62Ga0247752_10018975 63Ga0247800_10582882 64Ga0247800_11358911 65Ga0210076_10092872 66Ga0207642_100679691 67Ga0207647_100049444 68Ga0207645_100125826 69Ga0207643_100022174 70Ga0207707_100776362 71Ga0207657_110735111 72Ga0207650_100138058 73Ga0207706_100979954 74Ga0207669_106070401 75Ga0207704_101003072 76Ga0207691_100762575 77Ga0207675_1026624801 78Ga0207698_104283722 79Ga0209470_10258673 80Ga0207452_1020392 81Ga0207594_1023082 82Ga0207498_1071561 83Ga0209973_10058702 84Ga0209995_10010256 85Ga0209983_10010571 86Ga0209966_10387853 87Ga0207428_1000515513 88Ga0209382_103309843 89Ga0209382_105447021 90Ga0247749_10258202 91Ga0268264_105065112 92Ga0310888_101716672 93Ga0310888_102061393 94Ga0310907_100244854 95Ga0310904_101488251 96Ga0310893_100157112 97Ga0310901_100099365 98Ga0310889_100600373 99Ga0310889_101963681 100Ga0310896_100363942 101Ga0314786_023290_31_312
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128. 1F14TC_1002373972 2JGI24033J26618_10028685 3JGI26133J50247_1014001 4Ga0066676_100139094 5Ga0070680_1000166094 6Ga0134086_102367372 7Ga0157292_100424271 8Ga0247753_10414022
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128. 1F14TC_1002373972 2JGI24033J26618_10028685 3JGI26133J50247_1014001 4Ga0066676_100139094 5Ga0070680_1000166094 6Ga0134086_102367372 7Ga0157292_100424271 8Ga0247753_10414022
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.20% β-sheet: 32.35% Coil/Unstructured: 27.45%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01638	HxlR	41.58
PF13473	Cupredoxin_1	7.92
PF00296	Bac_luciferase	5.94
PF08240	ADH_N	0.99
PF06348	DUF1059	0.99
PF01839	FG-GAP	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	41.58
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	5.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.43%
Host-Associated	Host-Associated	42.57%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	3.96%
Plants	Host-Associated → Plants	42.57%
Terrestrial	Environmental → Terrestrial	53.47%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Marine	Environmental → Aquatic → Marine	2.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.79%
Roots	Host-Associated → Plants → Roots	0.99%
Soil	Environmental → Terrestrial → Soil	53.47%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.80%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.97%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	8.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.99%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300003349	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM	Host-Associated	Open in IMG/M
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300003392	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM	Host-Associated	Open in IMG/M
3300003397	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM	Host-Associated	Open in IMG/M
3300003504	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM	Host-Associated	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M

Showing 1 to 10 of 96 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1002373972	3300000559	Soil	MPFILRGRFIRSIFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
JGI11643J11755_116610111	3300000787	Soil	MPFXLRGRITXSIFAFAAIEYEFLLTVSGQIKYELLKMNDAKFIDIVHWRYTEVAKQAAKVVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
JGI11643J12802_111310391	3300000890	Soil	MPFVLRGRITNSIFAFAEIEYEFLLTVSGQIKYELLKMNDAKFIDIVHWRYTEVAKQAAKVVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
JGI24033J26618_10028685	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	VTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTXVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
JGI26129J50193_10062913	3300003349	Arabidopsis Thaliana Rhizosphere	HDSQVYLFAFAAIEYEFPLTVSDQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR*
JGI26145J50221_10001626	3300003371	Arabidopsis Thaliana Rhizosphere	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSKQIFNIILATKFSR*
JGI26134J50242_1009951	3300003392	Arabidopsis Thaliana Rhizosphere	EIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSKQIFNIILATKFSR*
JGI26133J50247_1014001	3300003397	Arabidopsis Thaliana Rhizosphere	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINC
JGI26138J51218_1042402	3300003504	Arabidopsis Thaliana Rhizosphere	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHK
Ga0055468_100085703	3300003993	Natural And Restored Wetlands	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFLLTVSGQIKHELLKMNDAKFIDIVHWRYTEVAKQAAKVVSLNKAFINRFKIIHKLSKQIFNIILATKFSR*
Ga0055467_100008154	3300003996	Natural And Restored Wetlands	MPFVLRGRITKSIFAFAAIEYEFLLTVSGQIKHELLKMNDAKFIDIVHWRYTEVAKQAAKVVSLNKAFINRFKIIHKLSKQIFNIILATKFSR*
Ga0069718_112623912	3300004481	Sediment	EGSKLRFGSRLEIMPFVLRGRITNSIFAFAAIEYEFLLTVSGQIKYELLKMNDAKFIDIVHWRYTEVAKQAAKVVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
Ga0066676_100139094	3300005186	Soil	MPFKLTHFTRSIFGFEAIEYESFRTVSGYVKHELLKTNDAKLIDIVHWRNMQVAKQAAKVAALNTASMNCLKIIKKPSKQIFNIILATKFSR*
Ga0065705_100128521	3300005294	Switchgrass Rhizosphere	MPFILRGRIIRSIFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
Ga0070670_1001472824	3300005331	Switchgrass Rhizosphere	LRFGSKLEIMPFVLGGGITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0070677_100700881	3300005333	Miscanthus Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0070680_1000166094	3300005336	Corn Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKAK*
Ga0070691_100575783	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0070668_1003085983	3300005347	Switchgrass Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0070669_1009748882	3300005353	Switchgrass Rhizosphere	MPFILRGRITRSISAFAAIEYEFLLTVSGQIKHGLFKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
Ga0070705_1000433352	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKAK*
Ga0070694_1001523692	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0070708_1014144551	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPFVLRGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0066686_100702113	3300005446	Soil	LKFGTRLEIMPFKLTHFTRSIFGFEAIEYESFRTVSGYVKHELLKTNDAKLIDIVHWRNMQVAKQAAKVAALNTASMNCLKIIKKPSKQIFNIILATKFSR*
Ga0070663_1006722153	3300005455	Corn Rhizosphere	IEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0070662_1004703751	3300005457	Corn Rhizosphere	LRFGSRLEIMPFILRGRITRSIFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWRYTEVAKQEAKVFALNKPFINCFKTIHKLS
Ga0070681_100500537	3300005458	Corn Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTKVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0068867_1021885752	3300005459	Miscanthus Rhizosphere	LRFGSRLEIMPFILRGRITRSIFAFAAIEYEFLLIVSGQIKHELLKMNEAKFIDIVHWRYTEVAQEAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
Ga0070696_1017623541	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKAK*
Ga0068866_100708443	3300005718	Miscanthus Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
Ga0068862_1027717171	3300005844	Switchgrass Rhizosphere	LRFGSRLEIMPFILRGRITRSIFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIIL
Ga0075422_100049812	3300006196	Populus Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELSKMNDAKLIDFVHWRYTEVAKQAAKVFTLNKRFINCFKKIHKLSKQIFNIILATKFSR*
Ga0075431_1001367143	3300006847	Populus Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELSKMNDAKLIDFVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0114129_111617501	3300009147	Populus Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHCRYTEVAKQAAKVFTLDKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0134086_102367372	3300010323	Grasslands Soil	LKFGTRLEIMPFKLTHFTRSIFGFEAIEYESFRTVSGYVKHELLKTNDAKLIDIVHWRNMQVAKQAAKVAALNTASM
Ga0105239_104727301	3300010375	Corn Rhizosphere	SQVYLFAFAAIEYEFPLTVSDQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR*
Ga0157304_10048472	3300012882	Soil	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFTLNKPFINCFKTLHKLSKQIFNIILATKFSR*
Ga0157281_10224741	3300012883	Soil	EVCITKSIFAFAAIEYEFPLTVSDQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR*
Ga0157300_10029134	3300012884	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR*
Ga0157287_11252371	3300012885	Soil	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSKQIFNIIL
Ga0157305_100092361	3300012891	Soil	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHK
Ga0157293_100005854	3300012898	Soil	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIILATKFSR*
Ga0157292_100424271	3300012900	Soil	GRKESKLRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSDQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR*
Ga0157291_101591542	3300012902	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKPSKQIFNIILATKFSR*
Ga0157282_102158872	3300012904	Soil	LRFGSKLEIMPFILRGRITRSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIH
Ga0157296_100450132	3300012905	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSKQIFNIILATKFSR*
Ga0157283_102268462	3300012907	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCF
Ga0157290_101952411	3300012909	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0157308_103089131	3300012910	Soil	GRKGSKLRFGSKLEIMPFVLRGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTKVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0157301_100639682	3300012911	Soil	LRFGSKLEIMPFVLGGGITKSIFAFVAIKYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR*
Ga0157302_104154811	3300012915	Soil	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR*
Ga0157373_106151213	3300013100	Corn Rhizosphere	AAIEYEFLLTVSGQIKHGLFKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
Ga0163163_122284212	3300014325	Switchgrass Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKAK*
Ga0157377_111008031	3300014745	Miscanthus Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIIL
Ga0173483_105940941	3300015077	Soil	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLS
Ga0173483_108084471	3300015077	Soil	LRFGSRLEIMPFILRGRITRSIFAFAAIEYEFLLIVSGQIKHELLKMNEAKFIDIVQWRYTEVAQQSAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR*
Ga0132258_102769123	3300015371	Arabidopsis Rhizosphere	LRFGSKLEIMPFVLRGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFTR*
Ga0173481_100618684	3300019356	Soil	LRFGSKLEIMPFVLRSRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSKQIFNIILATKFSR
Ga0173482_100058502	3300019361	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSKQIFNIILATKFSR
Ga0247753_10414022	3300022892	Soil	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSKQIFNIILATKFSRXIEMQLEAQKTKKA
Ga0247745_10234932	3300022898	Soil	REEVCITKSIFAFAAIEYEFPLTVSDQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR
Ga0247752_10018975	3300023071	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTLHKLSKQIFNIVLATKFSR
Ga0247800_10582882	3300023263	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALYKPFINCFKIIHKLSKQIFNIILATKFSR
Ga0247800_11358911	3300023263	Soil	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSRXIETQLEAQKT
Ga0210076_10092872	3300025567	Natural And Restored Wetlands	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFLLTVSGQIKHELLKMNDAKFIDIVHWRYTEVAKQAAKVVSLNKAFINRFKIIHKLSKQIFNIILATKFSR
Ga0207642_100679691	3300025899	Miscanthus Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR
Ga0207647_100049444	3300025904	Corn Rhizosphere	MPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0207645_100125826	3300025907	Miscanthus Rhizosphere	MPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHCRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0207643_100022174	3300025908	Miscanthus Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0207707_100776362	3300025912	Corn Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTKVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0207657_110735111	3300025919	Corn Rhizosphere	LRFGSRLEIMPFILRGRITRYIFAFAAIEYEFLLTVSGQIKHGLFKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFIN
Ga0207650_100138058	3300025925	Switchgrass Rhizosphere	EIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKAK
Ga0207706_100979954	3300025933	Corn Rhizosphere	LRFGSRLEIMPFILRGRITRSIFAFAAIEYEFLLTVSGQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0207669_106070401	3300025937	Miscanthus Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIF
Ga0207704_101003072	3300025938	Miscanthus Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTKVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0207691_100762575	3300025940	Miscanthus Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0207675_1026624801	3300026118	Switchgrass Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTKVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILA
Ga0207698_104283722	3300026142	Corn Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTKVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIILATKFSR
Ga0209470_10258673	3300026324	Soil	LKFGTRLEIMPFKLTHFTRSIFGFEAIEYESFRTVSGYVKHELLKTNDAKLIDIVHWRNMQVAKQAAKVAALNTASMNCLKIIKKPSKQIFNIILATKFSR
Ga0207452_1020392	3300026749	Soil	VFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVQWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR
Ga0207594_1023082	3300026751	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSDQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR
Ga0207498_1071561	3300026822	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSSQIKHELLKMNDARFIDIVHCGYTEVAKQAAKVFTLNKPFINCFKTIHKLSKQIFNIVLATKFSR
Ga0209973_10058702	3300027252	Arabidopsis Thaliana Rhizosphere	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKPSKQIFNIILATKFSR
Ga0209995_10010256	3300027471	Arabidopsis Thaliana Rhizosphere	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSKQIFNIILATKFSR
Ga0209983_10010571	3300027665	Arabidopsis Thaliana Rhizosphere	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKLSK
Ga0209966_10387853	3300027695	Arabidopsis Thaliana Rhizosphere	LRFGSRLEIMPFILRGRITRSISAFAAIEYEFLLTVSGQIKHGLFKMNEAKFIDIVHWNYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIIL
Ga0207428_1000515513	3300027907	Populus Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHCRYTEVAKQAAKVFTLDKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0209382_103309843	3300027909	Populus Rhizosphere	TKSIFAFVAIEYEFLLTVSGQIKHELSKMNDAKLIDFVHWRYTEVAKQAAKVFTLNKRFINCFKKIHKLSKQIFNIILATKFSR
Ga0209382_105447021	3300027909	Populus Rhizosphere	MPFVLGGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTKVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFS
Ga0247749_10258202	3300027993	Soil	LRFGSKLEIMPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFKIIHKPSKQIFNIILATKFSR
Ga0268264_105065112	3300028381	Switchgrass Rhizosphere	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTKVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0310888_101716672	3300031538	Soil	LRFGSKLEIMPFVLRGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0310888_102061393	3300031538	Soil	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFK
Ga0310907_100244854	3300031847	Soil	MPFILRGRITRSIFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR
Ga0310904_101488251	3300031854	Soil	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR
Ga0310893_100157112	3300031892	Soil	MPFILRGRITRSIFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWRYMEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR
Ga0310901_100099365	3300031940	Soil	LRFGSKLEIMPFVLGGRITKSIFAFVTIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILTTKFSR
Ga0310889_100600373	3300032179	Soil	LRFGSRLEIMPFILRGRITRSIFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWRYTEVAQQAAKFVTLNKAFINCFKIIYKLSQQI
Ga0310889_101963681	3300032179	Soil	MPFVLRGRITKSIFAFAAIEYEFPLTVSGQIKHELLKMNDARFKDIVHWRYTEVAKQAAKVFALNKPFINCFEIIHKPSKQIFNIILATKFSRXIEMQLEAQKTKKAILTALAD
Ga0310896_100363942	3300032211	Soil	MPFILRGRITRSIFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVHWTYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR
Ga0314786_023290_31_312	3300034664	Soil	MPFVLRGRITKSIFAFVAIEYEFLLTVSGQIKHELLKMNDAKLIDIVHWRYTEVAKQAAKVFTLNKPFINCFKKIHKLSKQIFNIILATKFSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103537

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences