NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103469

Metagenome Family F103469

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103469
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 42 residues
Representative Sequence MTDTWKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVR
Number of Associated Samples 88
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(33.663 % of family members)
Environment Ontology (ENVO) Unclassified
(19.802 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.554 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.
1JGI24744J21845_100804281
2Ga0062389_1012424101
3Ga0066388_1064216192
4Ga0070703_103990971
5Ga0070713_1020083801
6Ga0073909_102995772
7Ga0070679_1012746291
8Ga0070684_1014368832
9Ga0070684_1018991031
10Ga0070733_104410321
11Ga0066696_101176273
12Ga0097621_1005186302
13Ga0079220_110668171
14Ga0073928_106619392
15Ga0105247_101540322
16Ga0105242_128126261
17Ga0105237_108985111
18Ga0105858_12651292
19Ga0126374_105332351
20Ga0134066_104046511
21Ga0126381_1012583062
22Ga0134122_126838831
23Ga0137385_115959691
24Ga0137404_100981181
25Ga0137407_107043381
26Ga0126369_125227242
27Ga0126369_125988152
28Ga0157375_127628471
29Ga0187775_103355031
30Ga0187783_102113141
31Ga0187783_102752941
32Ga0187780_114091471
33Ga0187766_108830101
34Ga0187766_113794411
35Ga0187784_106048731
36Ga0193756_10272812
37Ga0210399_108732582
38Ga0210399_114120081
39Ga0210404_106244901
40Ga0210400_108888601
41Ga0210400_111219801
42Ga0210408_113651591
43Ga0210408_114622522
44Ga0210388_105415701
45Ga0210388_114445961
46Ga0210385_107121081
47Ga0213879_102800461
48Ga0210398_102690132
49Ga0210398_108404742
50Ga0210402_117005931
51Ga0210410_102955971
52Ga0210409_101184151
53Ga0212123_108039771
54Ga0247758_10190793
55Ga0207685_105910772
56Ga0207704_101652111
57Ga0209158_10202045
58Ga0207815_10305381
59Ga0207761_10824391
60Ga0209733_11742391
61Ga0209795_101486122
62Ga0209279_101552202
63Ga0209574_103453271
64Ga0209574_103763102
65Ga0209167_106454062
66Ga0209579_100334241
67Ga0209169_100646793
68Ga0209488_107568061
69Ga0311354_100586891
70Ga0170834_1031661362
71Ga0302323_1023835292
72Ga0318516_106439542
73Ga0318515_107231231
74Ga0318561_104050422
75Ga0318572_105389691
76Ga0318572_106776422
77Ga0318493_104352892
78Ga0318500_101148472
79Ga0318500_101951882
80Ga0318502_104779271
81Ga0318543_104379591
82Ga0318568_107044901
83Ga0307478_102331571
84Ga0318522_100045965
85Ga0306921_110217722
86Ga0308175_1011477781
87Ga0310913_108288161
88Ga0318563_101582831
89Ga0318549_104787291
90Ga0318575_101169731
91Ga0318533_110554051
92Ga0318504_100481793
93Ga0318513_102608792
94Ga0308173_116426102
95Ga0307471_1037444192
96Ga0335081_112644501
97Ga0335069_121255772
98Ga0335076_100562925
99Ga0335076_113801482
100Ga0335073_119898801
101Ga0335077_115458881
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.90%    β-sheet: 11.27%    Coil/Unstructured: 71.83%
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Variant

510152025303540MTDTWKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Bog Forest Soil
Marine
Iron-Sulfur Acid Spring
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Bulk Soil
Grasslands Soil
Surface Soil
Agricultural Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Peatland
Permafrost Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Fen
Palsa
Plant Litter
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Agave
4.0%4.0%4.0%33.7%5.9%6.9%3.0%3.0%3.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24744J21845_1008042813300002077Corn, Switchgrass And Miscanthus RhizosphereMSEAPKRRLLDEIGTSPTFVADGCILTGDLETNGPIVVCGSVRGDGRI
Ga0062389_10124241013300004092Bog Forest SoilMIERLKRRLIDQIGEAPTFVAEGSRLSGDLEATGDLILCGTIRG
Ga0066388_10642161923300005332Tropical Forest SoilLLQEVVMSDSPKRRLLDEIGTSPTFVADGCHLTGDLETNGPIVV
Ga0070703_1039909713300005406Corn, Switchgrass And Miscanthus RhizosphereMNDSRKRRLIDSIGSSPTFVAEGVRLTGDLETPGPLVVCGAVRGDGRV
Ga0070713_10200838013300005436Corn, Switchgrass And Miscanthus RhizosphereMSEAPKRRLIDRIGTSPTFVAEGCRLTGDLEAPGALVVCGTIRGD
Ga0073909_1029957723300005526Surface SoilMTQTLKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVRGDGKI
Ga0070679_10127462913300005530Corn RhizosphereMSHQPKRRLLDEIGTSPTFVADGSVITGDLELTGSIVVCGSVRGD
Ga0070684_10143688323300005535Corn RhizosphereMSDLPKRRLIDQLGSSPTFVAEGCHLTGDVETGGPLVVCGAIRGDG
Ga0070684_10189910313300005535Corn RhizosphereMSEAPKRRLIDRIGTSPTFVAEGCRLTGDLEAPGALVVCGTIRGDGHVA
Ga0070733_1044103213300005541Surface SoilMSDLHKRRLIDSIGDSPTFVAEGVRLSGDLETPGPLVLC
Ga0066696_1011762733300006032SoilMSETIKRRLIDQIGDSPTFVSEGSVLTGDLETPGPLVMCGVVR
Ga0097621_10051863023300006237Miscanthus RhizosphereMNDSRKRRLIDSIGSSPTFVAEGVRLTGDLETPGPLV
Ga0079220_1106681713300006806Agricultural SoilMSDLPKRRLLDEIGTSPAFVADGCVITGDLETNGPIVVCGSVRG
Ga0073928_1066193923300006893Iron-Sulfur Acid SpringMSETLKRRLIDQIGDTPTFVAEESLLTGDLETDGPLVLCGAI
Ga0105247_1015403223300009101Switchgrass RhizosphereMSDTPKRRLVDLIGPSPTFVAEGCRLTGDVETDGPLVVCGAIRG
Ga0105242_1281262613300009176Miscanthus RhizosphereMTDQPKRRLLDEIGTSPTFVADGCVLTGDLETHGAIVVCGSVR
Ga0105237_1089851113300009545Corn RhizosphereMMSDLPKRRLIDQLGSSPTFVAEGCHLTGDVETGG
Ga0105858_126512923300009661Permafrost SoilMTGNPQEHRMIDKRRLIDQIGDSPTFVAEGVRLTGDLETPGP
Ga0126374_1053323513300009792Tropical Forest SoilMTETSKRRLLDQIGDSPTFVAEGSRLTGDVETTGPLVVCGA
Ga0134066_1040465113300010364Grasslands SoilMIQTLKRRLIDQIGDSPTFVSEGSRLTGDLETSGPLVMCGAVRGDGRVA
Ga0126381_10125830623300010376Tropical Forest SoilMAETHKRRLIDQIGDSPTFVAEGSRVSGDLETVGPLVVCG
Ga0134122_1268388313300010400Terrestrial SoilMNDSRKRRLIDSIGSSPTFVAEGVRLTGDLETPGPLVVCGA
Ga0137385_1159596913300012359Vadose Zone SoilMIQTLKRRLIDQIGDSPTFVSEGSRLTGDLETSGPLVMCGAVRGDGRVAG
Ga0137404_1009811813300012929Vadose Zone SoilMSETLKRRLIDQIGDSPTFVAEGSRLTGDLETPGPLVMCGIVRGD
Ga0137407_1070433813300012930Vadose Zone SoilMSETIKRRLIDQIGDSPTFVAEGSRLTGDLETPGPLVMCGIV
Ga0126369_1252272423300012971Tropical Forest SoilMNDTPRRRLIDQVADAPTFVAEGARLTGDLEAPGPLVVCGAV
Ga0126369_1259881523300012971Tropical Forest SoilMLDQLGESPTFVAPGSRISGDLVTLGPLVVCGAVRG
Ga0157375_1276284713300013308Miscanthus RhizosphereMSETPKRRLVDQLGVSPTFVAEGCHLTGDVETGGP
Ga0187775_1033550313300017939Tropical PeatlandMSETPKRRLLDEIGGSPTFVADGCTLTGDVETKGPLVVCGAVHGDGRI
Ga0187783_1021131413300017970Tropical PeatlandMSETLKRRLMDQIGDSPTFVAEGSRLTGDVETAGPLVVCGTIRG
Ga0187783_1027529413300017970Tropical PeatlandMIEALKRRLVDQVGESPTFVAEGSQLTGDLETPGPLV
Ga0187780_1140914713300017973Tropical PeatlandMSEVPKRRLLDQLTGSPTFVADGCHVTGDLEAPGPLVVCGRIQ
Ga0187766_1088301013300018058Tropical PeatlandMSGTLRRRLIDQIGDSPTFVAEGSRLNGDLETAGPLVV
Ga0187766_1137944113300018058Tropical PeatlandMTETLRRRLMDQIGDSPTFVAEGSRVTGDFETAGPLVVCGAIRGDGR
Ga0187784_1060487313300018062Tropical PeatlandMIEALKRRLVDQVGESPTFVAEGSQLTGDLETPGPLVVSGTVRGD
Ga0193756_102728123300019866SoilMTETFKRRLIDQIGDSPTFVAEGSRLTGDLETPGPLVL
Ga0210399_1087325823300020581SoilMNDLQKRRLIDSIGDSPTFVAEGVRLTGDLETPGPLVI
Ga0210399_1141200813300020581SoilMSDAPKRRLIDQLGVSPTFVAEGCRFTGDVETTGPLVVCGTIRG
Ga0210404_1062449013300021088SoilMNDPLKRRLIDQIGDAPTFVAEGSRLTGDLETGGPLVVCGAIRG
Ga0210400_1088886013300021170SoilMGEDTQRRRMLDQLGDSPTFVAPGSRISGDLETLGPLVVCGAVRGDGRI
Ga0210400_1112198013300021170SoilMTQTLKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVR
Ga0210408_1136515913300021178SoilMNDPLKRRLIDQIGDAPTFVAEGSRLTGDLETGGPL
Ga0210408_1146225223300021178SoilMNATPKRRLIDQIGISPTFVAEGCQLTGDVETGGPLVVL
Ga0210388_1054157013300021181SoilMSDLHKRRLIDSIGDSPTFVAEGVRLSGDLETPGPLVLCGEI
Ga0210388_1144459613300021181SoilMSDAPKRRLIDQLGVSPTFVAEGCRFTGDVETTGPLVV
Ga0210385_1071210813300021402SoilMNDPQKRRLIDSVGDSPTFIAEGVRVTGDLETPGP
Ga0213879_1028004613300021439Bulk SoilMSGTLRRRLIDQIGDSPTFIAEGSRLTGDLESAGPLVVCGIVR
Ga0210398_1026901323300021477SoilVFEPRKRRLLDQIGESPTFVAPGSRLTGDLETDGPLVVCGTVRG
Ga0210398_1084047423300021477SoilMSDAPKRRLIDQLGVSPTFFAEGCRFTGDVETGGPLVVCGAIR
Ga0210402_1170059313300021478SoilMNDLQKRRLIDSIGDSPTFVAEGVRLTGDLETPGPLVICGAVRGDGRV
Ga0210410_1029559713300021479SoilMSDAPKRRLIDQLGVSPTFVAEGCRFTGDVETTGPLV
Ga0210409_1011841513300021559SoilMNDLQKRRLIDSIGDSPTFVAEGVRLTGDLETPGPLV
Ga0212123_1080397713300022557Iron-Sulfur Acid SpringMSDLPKRRLIDQLGSSPTFVAEGCQLTGDVETGGPLVVC
Ga0247758_101907933300023079Plant LitterMSDQPKRRLLDEIGTSPTFVADGCVLTGDLETNGPIVV
Ga0207685_1059107723300025905Corn, Switchgrass And Miscanthus RhizosphereMTQTLKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVV
Ga0207704_1016521113300025938Miscanthus RhizosphereMNDSRKRRLIDSIGSSPTFVAEGVRLTGDLETPGPLVVCGAVRG
Ga0209158_102020453300026333SoilMSETIKRRLIDQIGDSPTFVAEGSVLTGDLETPGPLVMCGIVRGDGR
Ga0207815_103053813300027014Tropical Forest SoilMTETSKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAIRGDG
Ga0207761_108243913300027516Tropical Forest SoilMTEPLKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGS
Ga0209733_117423913300027591Forest SoilMSETPKRRLIDQLGDSPTFVAEGSRLTGDLETPGPLVMCGVVRGDGRV
Ga0209795_1014861223300027718AgaveMSDQPKRRLLDEIGTSPTFVADGAVLTGDLETNGAIVVCGHVRGDGRIGGAL
Ga0209279_1015522023300027771MarineMSDSPKRRLIDHLGGSPTFVAEGCQVTGDVETGGPLVVCGAIRGDG
Ga0209574_1034532713300027809AgaveMADAPKRRLLDEIGTSPTFVADGCVLTGDLETNGPIVVCGHVRGDGR
Ga0209574_1037631023300027809AgaveMTDQPKRRLLDEIGTSPTFVADGCVLTGDLETNGAIVVCGSVRGDGR
Ga0209167_1064540623300027867Surface SoilMIETLKRRLIDQIGDAPTFVAEGSRLTGDLETTGPLVLCGAVRGDGRV
Ga0209579_1003342413300027869Surface SoilMITSLKRRLLDKLGEAPSFITEGSRVTGDVETTGSLVVCGTNRG
Ga0209169_1006467933300027879SoilMIATLKRRLMDQLQAGEAPTFVTVGSRVTGDIEAAGPLVVCGSVRGD
Ga0209488_1075680613300027903Vadose Zone SoilMSETFKRRLIDQIGDSPTFVAEGSRLTGDLETPGPLVM
Ga0311354_1005868913300030618PalsaMNDPQKRRLIDSVGESPTFIAEGVRVTGDLETPGPLVVCG
Ga0170834_10316613623300031057Forest SoilMADTLKRRLLDQIGDSPTFVAEGSCITGDLETAGPLVVCGSVAGDGRVAG
Ga0302323_10238352923300031232FenMSDLPKRRLIDQLGSSPSFVAEGCHLTGDVETGGPL
Ga0318516_1064395423300031543SoilMTETSKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVV
Ga0318515_1072312313300031572SoilMTDAPKRRLLDQLGGSPTFVAEGCQLTGDVETPGPLVVCGSVRG
Ga0318561_1040504223300031679SoilMTDTWKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVRGDGRI
Ga0318572_1053896913300031681SoilMTETWKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVRG
Ga0318572_1067764223300031681SoilMAEPLKRRLLDQIGESPTFVTEGSRITGDLESNGPLVVCGTVTGDGRV
Ga0318493_1043528923300031723SoilMTETSKRRLIDQIGDSPTFVAEGSRVTGDLETTGPLV
Ga0318500_1011484723300031724SoilMTETLKRRLMDQIGDSPTFVAEGSRVTGDFETSGPLVVCGAIRGDHCGTG
Ga0318500_1019518823300031724SoilMTETSKRRLIDQIGDSPTFVAEGSRVTGDLETVGPLV
Ga0318502_1047792713300031747SoilMTETSKRRLIDQIGDSPTFVAEGSRVTGDLETTGPLVVCGAI
Ga0318543_1043795913300031777SoilMTETLKRRLMDQIGDSPTFVAEGSRVTGDFETSGPLVVCGAI
Ga0318568_1070449013300031819SoilMTDTWKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVR
Ga0307478_1023315713300031823Hardwood Forest SoilMSETLKRRLIDQIGDTPTFVAEGSRLTGDLETDGPLVLCGA
Ga0318522_1000459653300031894SoilMTDTWKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVRGD
Ga0306921_1102177223300031912SoilMTETWKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVC
Ga0308175_10114777813300031938SoilMSDQPKRRLLDEIGTSPTFVAEGCVLTGDLEANGALVVCGSVRGDGRI
Ga0310913_1082881613300031945SoilMTQTLKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCG
Ga0318563_1015828313300032009SoilMTETLKRRLMDQIGDSPTFVAEGSRVTGDFETSGPLV
Ga0318549_1047872913300032041SoilMTETSKRRLIDQIGDSPTFVAEGSRVTGDLETVGPLVVCGAV
Ga0318575_1011697313300032055SoilMAETLKRRLMDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVRGDGRI
Ga0318533_1105540513300032059SoilMTETSKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLV
Ga0318504_1004817933300032063SoilMADTLKRRLMDQIGDSPTFVAEGSRVSGDLETAGPLVVCGAVRGD
Ga0318513_1026087923300032065SoilMTETSKRRLIDQIGDSPTFVAEGSRVTGDLETAGPLVVCGAVRGDG
Ga0308173_1164261023300032074SoilMSDRDPPRRRLLDEIGTSPTFVTEGTVLTGDLETSGSIVVCG
Ga0307471_10374441923300032180Hardwood Forest SoilMTETLKRRLMDQIGDSPTFVAEGSRLTGDVEAAGPL
Ga0335081_1126445013300032892SoilMSDVPKRRLIDQLGSSPTFVAAGCQLTGDLETAGPLVV
Ga0335069_1212557723300032893SoilMSEAPKRRLVDQFGVSPTLVAEGCRFTGDIETGGPLVV
Ga0335076_1005629253300032955SoilMSDSQKRRLIDSIGDSPTFVAEGVRITGDLETSGPLVVCGSVRG
Ga0335076_1138014823300032955SoilMSATPKRRLIDQLGSSPTFVAEGCHLTGDVETGGP
Ga0335073_1198988013300033134SoilMSDSQKRRLIDSIGDSPTFVAEGVRITGDLETSGPLVVCGSV
Ga0335077_1154588813300033158SoilMNDAPKRRLLDQLGGSPTFVAEGSRLTGDLETAGAL


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