Basic Information | |
---|---|
Family ID | F103466 |
Family Type | Metagenome |
Number of Sequences | 101 |
Average Sequence Length | 45 residues |
Representative Sequence | GWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS |
Number of Associated Samples | 93 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 1.98 % |
% of genes near scaffold ends (potentially truncated) | 95.05 % |
% of genes from short scaffolds (< 2000 bps) | 98.02 % |
Associated GOLD sequencing projects | 87 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (12.871 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.554 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (50.495 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 5.71% β-sheet: 28.57% Coil/Unstructured: 65.71% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Freshwater Wetlands Soil Groundwater Sediment Soil Vadose Zone Soil Tropical Forest Soil Switchgrass Rhizosphere Soil Agricultural Soil Sugarcane Root And Bulk Soil Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere Hardwood Forest Soil Soil Natural And Restored Wetlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Peat Soil Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
F14TC_1009851351 | 3300000559 | Soil | LRVKASFPVNLSDYSIRKPRYLGVGVKDTIQVEVAFAVIR* |
JGI1027J12803_1023691031 | 3300000955 | Soil | TVTGPVEVKKTGPGLRIKASFPVNLPDYNIPEPRYLGVGVKNTVQVEVIFTATQ* |
JGI10216J12902_1102391932 | 3300000956 | Soil | VRVDASFFVNLPDFGIAKPRYLGVGVKDQVQVKVSFGSAE* |
soilH2_101616663 | 3300003324 | Sugarcane Root And Bulk Soil | GPAEIRQAGTGWRVRASFPINLPDYNIEKPRYLGVGVKDTVQVTVTFIARQS* |
Ga0062593_1029764852 | 3300004114 | Soil | GTLDVRQAGPALRVKASFPVLLSDYGIAKPRYLGVGVKDTVQVEVAFVVSR* |
Ga0062595_1017518191 | 3300004479 | Soil | QGTGLRVRASFAVDLPDYGIGKPRYLGVGVKDTVQVEVAFAVTR* |
Ga0062592_1023785672 | 3300004480 | Soil | VRQAGPALRVKASFPVLLSDYGIAKPRYLGVGVKDTVQVEVAFVVSR* |
Ga0066673_102287631 | 3300005175 | Soil | VRPAGGGLRVKASFPVSLSDYGIPEPRYLGIGVRNTVQVEVAFAITQ* |
Ga0066690_105531712 | 3300005177 | Soil | GLRVKASFPVSLSDYGIPEPRYLGIGVRNNVQVEVAFAVTQ* |
Ga0065705_108159781 | 3300005294 | Switchgrass Rhizosphere | IRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS* |
Ga0065707_108000961 | 3300005295 | Switchgrass Rhizosphere | GWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS* |
Ga0070677_106838681 | 3300005333 | Miscanthus Rhizosphere | TVTGSVEIRQAGAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS* |
Ga0068869_1008157812 | 3300005334 | Miscanthus Rhizosphere | QAGAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS* |
Ga0070680_1003518362 | 3300005336 | Corn Rhizosphere | GTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS* |
Ga0070660_1017570491 | 3300005339 | Corn Rhizosphere | RESGTALRVKAVFPIALADYGIRQPRYLGVGVRDTVTVEVTFAVTN* |
Ga0070691_108196231 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | DGGLRVKASFRLDLSDYGIAKPRYLGIGVTNTVRVEVAFDVSR* |
Ga0070687_1005395551 | 3300005343 | Switchgrass Rhizosphere | GWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTSTATQS* |
Ga0070661_1014201801 | 3300005344 | Corn Rhizosphere | RVTASFPVNLPDYSIRKPRYLGVGVKDIVQVEVAFSVTR* |
Ga0070692_103699172 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | AGLRVKASFPVNLHDYNIAEPRYLGVGVRDTVQVDVTFTTAQ* |
Ga0070667_1001927253 | 3300005367 | Switchgrass Rhizosphere | AGAGLRVRASFPVNLPDYNIAEPRYLGVGVKDTVQVDVTFTTTQS* |
Ga0070705_1018395181 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | GLRVKASFPVELPAYGIDKPRYLGIGVKDIVRVEAAFAVTH* |
Ga0068867_1008887781 | 3300005459 | Miscanthus Rhizosphere | AEIRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS* |
Ga0068867_1010682991 | 3300005459 | Miscanthus Rhizosphere | VRAQGTGLRVRASFPVDLPDYGIGKPRYLGVGVKDTVQVEVAFAVTR* |
Ga0070685_105772892 | 3300005466 | Switchgrass Rhizosphere | TGTIDVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR* |
Ga0068853_1014931642 | 3300005539 | Corn Rhizosphere | TDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR* |
Ga0070672_1002073012 | 3300005543 | Miscanthus Rhizosphere | KTVTGTIDVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR* |
Ga0070665_1017282602 | 3300005548 | Switchgrass Rhizosphere | ASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR* |
Ga0070664_1000424951 | 3300005564 | Corn Rhizosphere | SFPVNLPDYNIAEPRYLGVGVKDTVQVDVTFTTTQS* |
Ga0068861_1009368102 | 3300005719 | Switchgrass Rhizosphere | ASFPVHLPEYNIAEPRYLGVGVKDTVQVDVTFITQ* |
Ga0097621_1005981053 | 3300006237 | Miscanthus Rhizosphere | FRLDLPDYGIAKPRYLGVGVTNTVQVEVAFDVAR* |
Ga0079222_113950042 | 3300006755 | Agricultural Soil | FPVNLPDYNIAEPRYLGVGVKNTVQVDVTFTTTQ* |
Ga0075428_1026385042 | 3300006844 | Populus Rhizosphere | GPVEIRQAGAGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS* |
Ga0068865_1003939292 | 3300006881 | Miscanthus Rhizosphere | VDVRAQGTGLRVRASFPVDLPDYGIGKPRYLGVGVKDTVQVEVAFAVTR* |
Ga0079219_116645662 | 3300006954 | Agricultural Soil | PVEIRKAGSGMRVRASFPVNLPDYNIPEPRYLGVGVKNTVQVDVTFTTTQ* |
Ga0102851_115437321 | 3300009091 | Freshwater Wetlands | QSGAGLRVKASFLVTLADFSIRKPRYLGIGVKDTVQVDVAFAVTR* |
Ga0066709_1012464561 | 3300009137 | Grasslands Soil | GLRVKASFPVNLSDYGIRAPRYLGIGVRDTVQVEAAFAVSR* |
Ga0114129_131601652 | 3300009147 | Populus Rhizosphere | EIRQAGTAWRVRASFPVSLPDYNIEKPRYLGVGVRDTVQVSVTFTATQS* |
Ga0105243_116531421 | 3300009148 | Miscanthus Rhizosphere | TGPVEIRQAGAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS* |
Ga0105340_13583002 | 3300009610 | Soil | VKASFPVRLADYAISEPRYLGVGVKDTVEVNVTFSVAQGGQQ* |
Ga0126382_101862881 | 3300010047 | Tropical Forest Soil | ASFPVNLPDYNIDKPRYLGVGVKDTVQVLVTFTATQS* |
Ga0126372_125336602 | 3300010360 | Tropical Forest Soil | SFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQT* |
Ga0137425_10902922 | 3300011422 | Soil | VKASFGLNVSDYGIAKPRYLGVGVANTVQVEVAFDVSR* |
Ga0137452_11523602 | 3300011441 | Soil | AVDVREAGTGLRVKASFPVDLSDYSIRKPRYLGIGVKDTVQVEVAFAVSR* |
Ga0137437_11208693 | 3300011442 | Soil | RVKASFRLDVSDYGIAPPRYLGIGVTNTVQVEVAFDVSR* |
Ga0137430_12180602 | 3300012041 | Soil | GGGLRVTASFRLDLADYGIARPSYLGIGVTNTVQVEVAFDVSR* |
Ga0137364_107933621 | 3300012198 | Vadose Zone Soil | IKTSFPVNLPDYNIAEPRYLGVGVKNIVHVEVTFTTSQ* |
Ga0157298_103549572 | 3300012913 | Soil | LRVQASFPVNLSDYSIRKPRYLGIGVKDIVQVEVAFAVTR* |
Ga0137410_107853642 | 3300012944 | Vadose Zone Soil | RVKTSFPVNLPDYNIAEPRYLGVGVKNIVQVEVTFSATQ* |
Ga0164300_101235262 | 3300012951 | Soil | GLHVKASFPVDLSDYAIAKPRYLGVGVKDIVQVEVAFAVTR* |
Ga0164298_109039592 | 3300012955 | Soil | KRSVDVRAQRTRLRVRASFPVDLPDYGIGQPRYLGVDVKSTVQVEVAFAVTR* |
Ga0164303_107580621 | 3300012957 | Soil | DVRQVGAALRVKASFPLNLTDYSIRQPRYLGVGVKDTVTVEVAFAVTR* |
Ga0164307_106274161 | 3300012987 | Soil | DVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR* |
Ga0075323_11535881 | 3300014301 | Natural And Restored Wetlands | KGGAGLRVKASFPVNLPDYNIPEPRYLGVGVKNTVQVEVTFTTTQ* |
Ga0163163_106531972 | 3300014325 | Switchgrass Rhizosphere | EVHPAGAGHRVKASFPVDLPAYAIPKPRYLGVGVKDTVHVEVAFEVSR* |
Ga0163163_115193111 | 3300014325 | Switchgrass Rhizosphere | IRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTVTVTQS* |
Ga0157377_106037111 | 3300014745 | Miscanthus Rhizosphere | RASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS* |
Ga0173483_100865802 | 3300015077 | Soil | TKPVTGFVDVRPAGGGRRVKASFRLDLTDYGIAKPRYLGIGVTNTVQVEVAFDVSR* |
Ga0137409_101813443 | 3300015245 | Vadose Zone Soil | AGGGLQIKASFPITLSDYSISAPRYMGVGVKNTVQVQVAFAVTQ* |
Ga0132258_104318134 | 3300015371 | Arabidopsis Rhizosphere | VRASFPVTLADYSIRKPRYLGVGVKDTVTVEVAFAVTR* |
Ga0132256_1004266982 | 3300015372 | Arabidopsis Rhizosphere | KASFPVNLADYSIRKPRYLGVGVKDTVTVEVAFAVTR* |
Ga0132255_1006845133 | 3300015374 | Arabidopsis Rhizosphere | RQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS* |
Ga0132255_1007435841 | 3300015374 | Arabidopsis Rhizosphere | FPVLLSDYGIAKPRYLGVGVKDTVQVEVAFVVSR* |
Ga0163161_120438941 | 3300017792 | Switchgrass Rhizosphere | GAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS |
Ga0184620_101229051 | 3300018051 | Groundwater Sediment | VTASFPVNLPDYSIRKPRYLGVGVKDIVQVEVAFAVTR |
Ga0184619_101028781 | 3300018061 | Groundwater Sediment | TGAVDVRHAGAGLRVTASFPVNLSDYNIRKPRYLGVGVKDIVQVEVAFAVTR |
Ga0190273_107964472 | 3300018920 | Soil | KASFPVNLSDYNISEPRYLGVGVKNTVQVEVAFTVTQ |
Ga0173479_103592261 | 3300019362 | Soil | GAGHRVKASFPVDLPGYAIPKPRYLGVGVKDTVHVEVAFEVSR |
Ga0193719_101519762 | 3300021344 | Soil | LHVTASFPVNLPDYSIRKPRYLGVGVKDIVQVEVAFSVTR |
Ga0193719_102247511 | 3300021344 | Soil | VTGAVDVRQEGAALRVKASFPVLLSDYGIPKPRYLGVGVKDTVQVELVFAVSR |
Ga0207682_104982041 | 3300025893 | Miscanthus Rhizosphere | EIRQAGAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS |
Ga0207646_101747533 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | RVRASFPVNLPDYNIAEPRYLGVGVKNTVQVDVTFTTTS |
Ga0207701_105884782 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | SFPLNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS |
Ga0207701_114056792 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | AAGLRVNAAFPINLSDYGVSEPRYMGVGVKNTVQVQVTFTVTQ |
Ga0207691_101626382 | 3300025940 | Miscanthus Rhizosphere | LRSVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR |
Ga0207691_115907321 | 3300025940 | Miscanthus Rhizosphere | KASFRLKLSDYNIPEPRYLGVGVKDTVQVEVTFTASTP |
Ga0207651_106997191 | 3300025960 | Switchgrass Rhizosphere | AGTGWRVRASFPLNLPDYNIDKPRYLGVGVKDTVQVSVTVTVTQS |
Ga0207703_116621842 | 3300026035 | Switchgrass Rhizosphere | ASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR |
Ga0207678_110357562 | 3300026067 | Corn Rhizosphere | GVRKTVKGSVDVRAQGTGLRVRASFPVDLPDYGIGKPRYLGVGVKDIVQVEVAFAVTR |
Ga0207676_110533782 | 3300026095 | Switchgrass Rhizosphere | GTIDVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR |
Ga0209177_102838172 | 3300027775 | Agricultural Soil | PVEIRKAGSGMRVRASFPVNLPDYNIPEPRYLGVGVKNTVQVDVTFTTTQ |
Ga0209481_106377321 | 3300027880 | Populus Rhizosphere | EIRQVGAAWRVRASFPVNLPDYNIEKPRYLGVGVKDTVQVSVTFTATQS |
Ga0268266_108688191 | 3300028379 | Switchgrass Rhizosphere | GVTKTVTGTIDVRQAGTDVRVNASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR |
Ga0268264_111009711 | 3300028381 | Switchgrass Rhizosphere | VEIRQAGTAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS |
Ga0268264_117915892 | 3300028381 | Switchgrass Rhizosphere | PVEIRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVDVTFITQ |
Ga0247827_111172071 | 3300028889 | Soil | AGLRVKASFPVELADYSIRKPRYLGIGVRDTVQVEVVFALGRETRS |
Ga0307501_102595272 | 3300031152 | Soil | EVKKTGSGLRVKASFPVNLPDYNIPEPRYLGVGVKNTVQVEVTFTATQ |
Ga0310888_110389762 | 3300031538 | Soil | ASFPVDLTSYGIRKPRYLGVGVKDIVQVEVAFVVSR |
Ga0310887_108353991 | 3300031547 | Soil | VKASFPVDLATYRIRKPRYLGIGVKDIVQVEVAFAVSR |
Ga0307468_1011698521 | 3300031740 | Hardwood Forest Soil | KASFPLNLSDFGIREPRYLGVGVTNTVQVQVTFAVTH |
Ga0307473_109209562 | 3300031820 | Hardwood Forest Soil | KTVTGPVEIRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTTTQS |
Ga0310907_103248712 | 3300031847 | Soil | VKASFPVELADYGIRKPRYLGIGVRDSVQVEVVFALGRETRS |
Ga0310904_114240871 | 3300031854 | Soil | VRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR |
Ga0310885_101408201 | 3300031943 | Soil | ASFPVDLPAYGIGKPRYLGVGVKDTVQIEVAFAVTR |
Ga0310885_103441251 | 3300031943 | Soil | LRVKASFPVQLSDYSIRPPRYLGVGVKDIVQVEVAFAVSR |
Ga0310897_104772591 | 3300032003 | Soil | GGLRVQASFRLDLSDYNIAKPRYLGIGVTNTVQVEVAFDISR |
Ga0310906_104161251 | 3300032013 | Soil | GLRVRASFPVDLPDYGIGKPRYLGVGVKDTVQIEVAFAVTR |
Ga0310899_102377612 | 3300032017 | Soil | TAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS |
Ga0310889_103702911 | 3300032179 | Soil | SVDVRAQGTGLHVKASFPVDLSDYAIAKPRYLGVGVKDIVQVEVAFAVTR |
Ga0247829_110584272 | 3300033550 | Soil | SQTVTGAVDVRQAGGGLRVKASFPVNLPDYRIRQPRYLGIGVTDTVRVEVVFAVSR |
Ga0247830_109323652 | 3300033551 | Soil | GPDVRIDASFPVNLPEFGIPEPRYLGVGVKDQVQVKVKFGSAR |
Ga0326723_0464285_447_578 | 3300034090 | Peat Soil | GSGLRVKASFPVNLSDYNIPEPRYLGVGVKNTVQVEVTFTATQ |
⦗Top⦘ |