NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103453

Metagenome / Metatranscriptome Family F103453

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103453
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 63 residues
Representative Sequence TRPQALQGRIFRRVTTVLGTIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP
Number of Associated Samples 84
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 63.37 %
% of genes from short scaffolds (< 2000 bps) 57.43 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.396 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(42.574 % of family members)
Environment Ontology (ENVO) Unclassified
(50.495 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.594 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 58.70%    β-sheet: 0.00%    Coil/Unstructured: 41.30%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF00141peroxidase 14.85
PF04978DUF664 7.92
PF02781G6PD_C 4.95
PF13242Hydrolase_like 3.96
PF13354Beta-lactamase2 2.97
PF01564Spermine_synth 2.97
PF13659Obsolete Pfam Family 2.97
PF07077DUF1345 1.98
PF16925TetR_C_13 1.98
PF13344Hydrolase_6 1.98
PF05977MFS_3 1.98
PF01638HxlR 1.98
PF02705K_trans 0.99
PF13561adh_short_C2 0.99
PF01641SelR 0.99
PF12680SnoaL_2 0.99
PF00067p450 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0376Catalase (peroxidase I)Inorganic ion transport and metabolism [P] 14.85
COG0364Glucose-6-phosphate 1-dehydrogenaseCarbohydrate transport and metabolism [G] 4.95
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 1.98
COG2814Predicted arabinose efflux permease AraJ, MFS familyCarbohydrate transport and metabolism [G] 1.98
COG4291Uncharacterized membrane proteinFunction unknown [S] 1.98
COG0229Peptide methionine sulfoxide reductase MsrBPosttranslational modification, protein turnover, chaperones [O] 0.99
COG2124Cytochrome P450Defense mechanisms [V] 0.99
COG3158K+ uptake protein KupInorganic ion transport and metabolism [P] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A60.40 %
All OrganismsrootAll Organisms39.60 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005332|Ga0066388_102405690All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia955Open in IMG/M
3300005332|Ga0066388_105263099Not Available656Open in IMG/M
3300005436|Ga0070713_101951373All Organisms → cellular organisms → Bacteria → Terrabacteria group569Open in IMG/M
3300005468|Ga0070707_101038484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia785Open in IMG/M
3300005713|Ga0066905_100954520Not Available753Open in IMG/M
3300005764|Ga0066903_105816558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia647Open in IMG/M
3300009101|Ga0105247_11056558Not Available638Open in IMG/M
3300009143|Ga0099792_10829764All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia607Open in IMG/M
3300009143|Ga0099792_10929775All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300010043|Ga0126380_10466314Not Available959Open in IMG/M
3300010043|Ga0126380_12027923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium527Open in IMG/M
3300010048|Ga0126373_11100025Not Available861Open in IMG/M
3300010048|Ga0126373_13030850All Organisms → cellular organisms → Bacteria → Terrabacteria group524Open in IMG/M
3300010147|Ga0126319_1365567All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288974Open in IMG/M
3300010358|Ga0126370_11158010All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia716Open in IMG/M
3300010359|Ga0126376_11956520Not Available627Open in IMG/M
3300010398|Ga0126383_10418719All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1381Open in IMG/M
3300012201|Ga0137365_10238212All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1355Open in IMG/M
3300012395|Ga0134044_1206965Not Available502Open in IMG/M
3300012948|Ga0126375_10376950Not Available1017Open in IMG/M
3300012958|Ga0164299_10911494Not Available639Open in IMG/M
3300012987|Ga0164307_11047075Not Available667Open in IMG/M
3300015371|Ga0132258_10924501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2203Open in IMG/M
3300016270|Ga0182036_10290600All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae1239Open in IMG/M
3300016341|Ga0182035_11074501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia715Open in IMG/M
3300016371|Ga0182034_11748419Not Available547Open in IMG/M
3300016387|Ga0182040_10156942All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1629Open in IMG/M
3300016387|Ga0182040_10218678All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae1412Open in IMG/M
3300016422|Ga0182039_10280516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1371Open in IMG/M
3300016445|Ga0182038_11671552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii573Open in IMG/M
3300017974|Ga0187777_10652054All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium744Open in IMG/M
3300025916|Ga0207663_11584382Not Available527Open in IMG/M
3300025922|Ga0207646_10898178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia786Open in IMG/M
3300027765|Ga0209073_10252963All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia685Open in IMG/M
3300027765|Ga0209073_10449931Not Available536Open in IMG/M
3300027903|Ga0209488_10593606Not Available804Open in IMG/M
3300031546|Ga0318538_10561609Not Available619Open in IMG/M
3300031549|Ga0318571_10395566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia538Open in IMG/M
3300031572|Ga0318515_10197627Not Available1077Open in IMG/M
3300031668|Ga0318542_10312114All Organisms → cellular organisms → Bacteria806Open in IMG/M
3300031668|Ga0318542_10643419Not Available554Open in IMG/M
3300031679|Ga0318561_10016796All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3325Open in IMG/M
3300031713|Ga0318496_10217523All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1051Open in IMG/M
3300031751|Ga0318494_10077787All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1797Open in IMG/M
3300031751|Ga0318494_10887122Not Available523Open in IMG/M
3300031793|Ga0318548_10260336Not Available853Open in IMG/M
3300031795|Ga0318557_10251238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288810Open in IMG/M
3300031798|Ga0318523_10446935Not Available641Open in IMG/M
3300031821|Ga0318567_10247526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1001Open in IMG/M
3300031821|Ga0318567_10899760Not Available501Open in IMG/M
3300031831|Ga0318564_10214390Not Available856Open in IMG/M
3300031832|Ga0318499_10373477All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii547Open in IMG/M
3300031879|Ga0306919_10079161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2261Open in IMG/M
3300031893|Ga0318536_10015027All Organisms → cellular organisms → Bacteria3411Open in IMG/M
3300031894|Ga0318522_10208950All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia739Open in IMG/M
3300031946|Ga0310910_10343470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WAC002631179Open in IMG/M
3300031946|Ga0310910_10478654All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia988Open in IMG/M
3300032008|Ga0318562_10476666Not Available724Open in IMG/M
3300032065|Ga0318513_10143222Not Available1138Open in IMG/M
3300032066|Ga0318514_10798714All Organisms → cellular organisms → Bacteria → Terrabacteria group502Open in IMG/M
3300032067|Ga0318524_10488337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria646Open in IMG/M
3300032089|Ga0318525_10016401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3456Open in IMG/M
3300032089|Ga0318525_10049656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2080Open in IMG/M
3300032091|Ga0318577_10039921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2069Open in IMG/M
3300033289|Ga0310914_10970350Not Available750Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil42.57%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil10.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.89%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.98%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.98%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.99%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.99%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.99%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.99%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.99%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.99%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010147Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012395Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021377Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7Host-AssociatedOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021861Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066388_10240569023300005332Tropical Forest SoilVFRRVTTVLGTIALVTGLIGLAADSGQALETMVVATVFLWLTATIWHVLSIGEEPQ*
Ga0066388_10526309923300005332Tropical Forest SoilDLHTRPQPREGVIFRKVTTVLGTIALLAGLTALIDDSGHALEILVVITGFLWLTATIWHVLTIGSEP*
Ga0070713_10195137323300005436Corn, Switchgrass And Miscanthus RhizosphereAVFAAADLHTRPQPRPGRVVRRITTVLGAIALVAGLAGLAANNPKALEILVVAMGFLWLTGTLWHVYTIGDEQ*
Ga0070705_10190992523300005440Corn, Switchgrass And Miscanthus RhizosphereIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEQ*
Ga0070707_10103848423300005468Corn, Switchgrass And Miscanthus RhizosphereDLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNNGQALETMVVATVFLWLTATIWHVLSIGEEL*
Ga0070699_10215933623300005518Corn, Switchgrass And Miscanthus RhizosphereTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEQ*
Ga0066905_10095452013300005713Tropical Forest SoilQGVIFRKVTTVLGTIALLAGLIALIADSGRALEGLVVITGFLWLTATIWHVLTIGSEP*
Ga0066903_10581655823300005764Tropical Forest SoilTRPQALQGRIFRRVTTVLGTIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP*
Ga0070717_1018695043300006028Corn, Switchgrass And Miscanthus RhizosphereRRITTALGSIALVAGLAGLAGNSAHAVEILVVATTFLWLAATVWHVLSIGSEA*
Ga0097621_10124459723300006237Miscanthus RhizosphereVTTVLGTIALLAGLIALIANSGRALETLVVMTTFLWLTGTIWHVLTIGSES*
Ga0105247_1105655813300009101Switchgrass RhizosphereIFRKVTTVLGTIALLAGLIALIANSGRALETLVVMTTFLWLTGTIWHVLTIGSES*
Ga0099792_1082976413300009143Vadose Zone SoilTRPLSLQGRIFRRVTTVLGAIALVAGLAGLAGNSGQALEILVVATVFLWLTATIWHVLSIGSGY*
Ga0099792_1092977523300009143Vadose Zone SoilRPQPRQGVIFRRVTTVLGTIALLAGLIALIADSAHALEILVVITAFLWLTATIWHVLTIGSEP*
Ga0126380_1046631423300010043Tropical Forest SoilVIAAADLHTRPQEMQGRIFRRVTTVFGSIALVAGLIGLAADSGQALEIMLVATISLWLTATIWHVLSIGEEP*
Ga0126380_1202792313300010043Tropical Forest SoilRPQERLGVIFRRITTVLGAIALLAGLAGLLTNNRKLVEIVVVATGFLWLTAFIWHVLSIGSEQ*
Ga0126373_1110002523300010048Tropical Forest SoilVTAAADLHTRPQERLGVIFRRITTVLGTIALLAGLAGMLTSNRNLVEIVVVATGFLCLTTFIWHVLSIGSEQ*
Ga0126373_1303085013300010048Tropical Forest SoilQGVIFRKITTVLGTIALLAGLVGLIANSGQALEVLVVFTGFLWLTATIWHVLTIGSEP*
Ga0126319_136556723300010147SoilVIFRRVTTVLGTIALLAGLIALIADSAHALEILVVITAFLWLTATIWHVLTIGSEP*
Ga0126370_1115801023300010358Tropical Forest SoilVIAAVDLHTRPQALQGRIFRRITTVLGAIALLAGLAGLAGNSGQALEIMVVATISLWFTATLWHVLSIGAEL*
Ga0126370_1175822023300010358Tropical Forest SoilTTVLGTIALLAGLIALIADSGRALEFLVVFTTFLWLTATIWHVLTIGSGP*
Ga0126376_1195652013300010359Tropical Forest SoilGDLHTRPQPREGVIFRKVTTVLGTIALLAGLIALIADSGRALEILVVITAFLWLTATIWHVLTIGSQP*
Ga0126383_1041871913300010398Tropical Forest SoilLHTRPQALQGRIFRRITTVLGAIALLAGLAGLAGNSGQALEIMVVATISLWFTATLWHVLSIGAEL*
Ga0126383_1344550523300010398Tropical Forest SoilPQPLQGVIFRKITTVLGTIALLAGLAGLIANSGHAVEILFVATACLWLTATVWHVLTMGSEG*
Ga0126361_1072260913300010876Boreal Forest SoilRPQPRAGRIVRRITTALGSIALLAGLAGLAGNNAKAVEILVVDMTFLWLAATLWHVQSIGSQA*
Ga0137364_1020587113300012198Vadose Zone SoilRRITTVLGSIALLAGLAGLAGNNAHAVEILVVTTTFLWLAATLWHVQSIGSQA*
Ga0137365_1023821213300012201Vadose Zone SoilCAVTAAGDLHTRPQPRAGRIVRRITTVLGAIALAAGLAGLAANSGHAVEIMVVFTVFLWLTATVWHVLSIGADQ*
Ga0137381_1021197813300012207Vadose Zone SoilRIFRRITTVLGVIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGSQP*
Ga0137379_1027109633300012209Vadose Zone SoilVIVRKVTTVLGVIAGLAGLAGLAASSRHAVEVLVVVTAFLWLTGTIWHVLSIGSQP*
Ga0134044_120696513300012395Grasslands SoilRRVTTVLGTIALLAGLIALIADSAHALEILVVITAFLWLTATIWHVLTIGSEP*
Ga0126375_1037695023300012948Tropical Forest SoilVIFRKVTTVLGAIALLAGLIALIADSGRALEGLVVITGFLWLTATIWHVLTIGSEP*
Ga0164299_1091149413300012958SoilEGVIFRRVTTVLGTFALLAGLIALIADSGHALEILVVITGFLWLTATIWHVLTIGSEL*
Ga0126369_1232665223300012971Tropical Forest SoilRVTTVLGTIALLTGLIGLAGNSGQALETMVVATTFLWLTATIWHVLSIGEEP*
Ga0164307_1104707513300012987SoilRRLTTVLGTFALLAGLIALIADSGHALEILVVITGFLWLTATIWHVLTIGSEL*
Ga0132258_1092450143300015371Arabidopsis RhizosphereIFRRVTTVLGTIALMTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSMGEES*
Ga0182036_1029060013300016270SoilCAVIAAADLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP
Ga0182036_1119591313300016270SoilQERLGVIFRRITSVLGAIALLAGLAGMVTSNRHLVEIVVVATCFLCLTAFIWHVLSIGSE
Ga0182033_1168922423300016319SoilIFRRITTVLGVIALVAALAGLIANSGHAVEVVVVMTTFLWLTATIWHVLSIGAPPGESG
Ga0182035_1107450123300016341SoilADLHTRPQALQGRIFRRLTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP
Ga0182034_1174841923300016371SoilGALCAVTAAADLHTRPQERLGVIFRRITSVLGAIALLAGLAGMVTSNRHLVEIVVVATCFLCLTAFIWHVLSIGSEQ
Ga0182040_1015694213300016387SoilHTRPQALQGRIFRRVTTVLGAIALLAGLIGLAGNSGQALEIMIVATISLWFTATLWHVLSIGAEL
Ga0182040_1021867823300016387SoilLHTRPQPWLGVIFRRITTVLGSIALLAGLAGLIVNSGHAVEVLVVATCFLWLTATIWHVLGIESPS
Ga0182039_1028051633300016422SoilLHIRQQEWPGVIFRRITTVLGAIALLAGLGGLIASNRHLVEIVVVSTTFLWLTACIWHVLSIGSEPDR
Ga0182038_1167155223300016445SoilGVIFRKVTTVLGTIALLAGLAGLIANSVKTLESLVVFPIFLWLTATIWHVLTIGSES
Ga0187778_1124918413300017961Tropical PeatlandQPRNGQIFRRITTVLGVIALLAGLAGLITNSGQAVEVVVVATTFLWLTGTIWHVLSIGAPPSEAS
Ga0187777_1065205423300017974Tropical PeatlandDLHTRPQPRPGVIFRRITTVLGAIALLAGLAGLITNSAHAVEIIVVATVFLWLTAFIWHVVRPGS
Ga0210395_1033725613300020582SoilRIVRRVTTVLGAIALAAGLAGLLANSGHAVEILVVTTVFLWLTATMWHVFSIGSEQ
Ga0213874_1043563823300021377Plant RootsTRPQPRAGRIVRRITTVLGSIALVAGLAGLAGNSAHAVEVLVVTTTFLWLAATVWHVLGIGSEA
Ga0210384_1021666713300021432SoilPRPGRIVRRVTTVLGTIALLAGLTGMVANSGHAVEILVVTTTFLWLTATIWHAFTIGAEQ
Ga0210390_1131702513300021474SoilHTRPQPRAGRIVRRATTVLGAIALVAGLAGLLANSGHAVEILLVTTVFLWLTATMWHVLSIGSEQ
Ga0213853_1087880023300021861WatershedsQQRLGVVFRKITTVLGTGALAAGMYGLIADSGHALELLVVATSLLYMTGTIWHVLNIESQ
Ga0207663_1158438213300025916Corn, Switchgrass And Miscanthus RhizosphereLHTRPQPREGVIFRKVTTVLGTFALLAGLIALIANSARALEILVVITAFLWLTGTIWHVMTIGSEP
Ga0207646_1089817813300025922Corn, Switchgrass And Miscanthus RhizosphereDLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNNGQALETMVVATVFLWLTATIWHVLSIGEEL
Ga0209073_1025296323300027765Agricultural SoilAADLHTQPQPLPGRIFRRVTTVLGVIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSMGEES
Ga0209073_1044993113300027765Agricultural SoilLHTRPQPREGVIFRRVTTVLGTMALLAGLIALIADSGHALEILVVITGFLWLTATIWHVLTIGSEL
Ga0209465_1029588913300027874Tropical Forest SoilQGVIFRKITTVLGSIALLAGLAGLVANSGHAVEILFVATAFLWLTATIWHVLTIGSEQ
Ga0209488_1059360623300027903Vadose Zone SoilLNTRPLSLQGRIFRRVTTVLGAIALVAGLAGLAGNSGQALEILVVATVFLWLTATIWHVLSIGSGY
Ga0307296_1020384133300028819SoilTVLGAIALLAGLAGLIANSWHAVEILVVTTAFLWVTATMWHVLTIGSQP
Ga0307312_1018079213300028828SoilRRVTTVLGAIALLAGLAGLIANSWHAVEILVVTTAFLWVTATMWHVLTIGSQP
Ga0318538_1056160913300031546SoilIAAFDLHTRPQALQGRIFRRVTTVLGAIALLAGLIGLAGNSGQALEIMIVATISLWFTATLWHVLSIGAEL
Ga0318571_1029945323300031549SoilRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGEER
Ga0318571_1039556623300031549SoilRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGEEW
Ga0318528_1012047713300031561SoilFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGEEW
Ga0318515_1019762713300031572SoilADLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP
Ga0318555_1004828233300031640SoilITTVLGSIALLAGLAGLIVNSGHAVEVLVVATCFLWLTATIWHVLGIGSPS
Ga0318542_1015674323300031668SoilPQPWQGVIFRKITTVLGSIALLAGLAGLIVNSGHAVEVLVVATCFLWLTATIWHVLGIESPS
Ga0318542_1031211423300031668SoilAIDLHTRPLPRHGVIFRRITTVLGTIALVAGLAGLITNSVHAVEILVVITVFLWLTAFIWHIVKP
Ga0318542_1064341923300031668SoilLHTRPQPRPGRVARRITTVLGAVALVAGLAGLAVNSAKAVEILVVAMGFLWLTGTLWHVYTIGAER
Ga0318561_1001679643300031679SoilHIRQQEWPGVIFRRITTVLGAIALLAGLGGLIASNRHLVEIVVVSTTFLWLTAFIWHVLSIGSELDR
Ga0318496_1021752323300031713SoilLILEAVCAVIAAADLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP
Ga0318501_1028743423300031736SoilPGRVARRITTVLGAIALIAGLAGLAANSAKALEILVVAMGFLWLTGTLWHVYTIGEQ
Ga0318494_1007778733300031751SoilGAACAVIAAADLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP
Ga0318494_1088712213300031751SoilLCAVTAAADLHTRPQERLGVIFRRITSVLGAIALLAGLAGMVTSNRHLVEIVVVATCFLCLTAFIWHVLSIGSEQ
Ga0318535_1045715223300031764SoilGVIFRKITTVLGSIALLAGLAGLIVNSGHAVEVLVVATCFLWLTATIWHVLGIESPS
Ga0318548_1026033613300031793SoilLHTRPQPQPGRVARRITTVLGAIALVAGLAGLAGNDAKALEILVVAMGFLWLTGTVWHVYTLGEQ
Ga0318557_1025123823300031795SoilFRKITTVLGTIALLAGLIALIADSGHALEILVVITGFLWLTATIWHVVTIGSEP
Ga0318523_1044693523300031798SoilACAVIAAFDLHTRPQALQGRIFRRVTTVLGAIALLAGLIGLAGNSGQALEIMIVATISLWFTATLWHVLSIGAEL
Ga0318567_1024752613300031821SoilICAVFAAADLHTRPQPQPGRVARRITTVLGAIALVAGLAGLAGNDAKALEILVVAMGFLWLTGTVWHVYTLGEQ
Ga0318567_1089976023300031821SoilDLHTRPQPREGVIFRKVTTVLGTIALLAGLIALIADSGHALEILVVVTGFLWLTATIWHVLTIGSEP
Ga0307478_1163624113300031823Hardwood Forest SoilFRRITTVLGSIALLAALTGIVANNRQAVEIVVVATTFLWLTAFIWHVLSIGSPGEPADGSPG
Ga0318564_1021439013300031831SoilRRVTTVLGTIALLAGLIALIANSGRALEILVVITGFLWLTATIWHVLTIGSEP
Ga0318499_1037347723300031832SoilHTRPQPLPGVIFRKVTTVLGTIALLAGLAGLVANSERALAVLVVFTAFLWLTATIWHVLATGSGP
Ga0318511_1060649323300031845SoilTRPQPLAGRIVRRITTAFGSIALVAGLAGLVGNSAHAVEILVVATMWLWLAATVWHAYTIGSEA
Ga0318527_1002714833300031859SoilITTVLGSIALLAGLAGLIVNSGHAVEVLVVATCFLWLTATIWHVLGIESPS
Ga0306919_1007916143300031879SoilGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGEER
Ga0306925_1132430123300031890SoilFRRITTVLGVIALLAALVGLIANSGHAVEVVVVMTTFLWLTGTIWHVLGIGAPPGEAG
Ga0318536_1001502713300031893SoilTTPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGEER
Ga0318522_1020895023300031894SoilICAVFAAADLHTRPQPRPGRVARRITTVLGAAALVAGLTGLAVNSAKAVEVLVVAMGFLWLTGTLWHVYTIGAEQ
Ga0310913_1058330523300031945SoilQDLQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGEE
Ga0310910_1034347013300031946SoilIRPQERLGAIFRRITTVLGTIALLAGLAGMVTSNRHLVEIVVVATCFLCLTAFIWHVLSIGSEQ
Ga0310910_1047865413300031946SoilLHTTPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGEER
Ga0318562_1047666623300032008SoilWYAGHRPPEGVIFRRVTTVLGTIALLAGLIALIANSGRALEILVVITGFLWLTATIWHVLTIGSEP
Ga0318559_1025407723300032039SoilQALQGRIFRRVTTVLGSIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEE
Ga0318513_1014322223300032065SoilVLGAACAVIAAVDLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALEIMVVATISLWFTATLWHVLSIGAEL
Ga0318514_1025349513300032066SoilAGRIVRRITTAFGSIALVAGLAGLVGNSAHAVEILVVATMWLWLAATVWHAYTIGSEA
Ga0318514_1079871423300032066SoilLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP
Ga0318524_1048833713300032067SoilLHTQPQPRPGRVARRITTVLGAIALVAGLAGLAANSAKALEVLVVAMGFLWLTGTLWHVYTIGSEA
Ga0318525_1001640113300032089SoilLHTRPQDLQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATVFLWLTATIWHVLSIGEER
Ga0318525_1004965613300032089SoilLGAACAVIAAADLHTRPQALQGRIFRRVTTVLGAIALLTGLIGLAGNSGQALETMVVATIFLWLTATIWHVLSIGEEP
Ga0318577_1003992143300032091SoilFAAADLHTRPQPQPGRVARRITTVLGAIALVAGLAGLAGNDAKALEILVVAMGFLWLTGTVWHVYTLGEQ
Ga0310914_1097035023300033289SoilTAAADLHTRPQERLGVIFRRITSVLGAIALLAGLAGMVTSNRHLVEIVVVATCFLCLTAFIWHVLSIGSEQ
Ga0318519_1061783323300033290SoilVTTVLGTIALLAGLIALIANSGRALEILVVITGFLWLTATIWHVLTIGSEP


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