Metagenome / Metatranscriptome Family F103376

Overview

Basic Information

• Family ID: F103376
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 101
• Average Sequence Length: 44 residues
• Representative Sequence: DAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI
• Number of Associated Samples: 96
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 99.01 %
• % of genes from short scaffolds (< 2000 bps): 96.04 %
• Associated GOLD sequencing projects: 91
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (84.158 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (11.881 % of family members)
• Environment Ontology (ENVO): Unclassified (37.624 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (40.594 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 41.79%
  β-sheet: 0.00%
  Coil/Unstructured: 58.21%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00462	Glutaredoxin	14.85
PF00887	ACBP	14.85
PF00472	RF-1	7.92
PF00498	FHA	6.93
PF03007	WES_acyltransf	4.95
PF13616	Rotamase_3	3.96
PF07311	Dodecin	3.96
PF02826	2-Hacid_dh_C	2.97
PF13515	FUSC_2	1.98
PF02915	Rubrerythrin	1.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG4281	Acyl-CoA-binding protein	Lipid transport and metabolism [I]	14.85
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	7.92
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	7.92
COG4908	Uncharacterized conserved protein, contains a NRPS condensation (elongation) domain	General function prediction only [R]	4.95
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	3.96
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.98
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.99
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.99
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.99
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.99

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.16 %
Unclassified	root	N/A	15.84 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.16 %
Unclassified	root	N/A	15.84 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.16 %
Unclassified	root	N/A	15.84 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.30 %
Unclassified	root	N/A	15.84 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.97 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	34.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.94 %
Unclassified	root	N/A	15.84 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7.92 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.98 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.99 %
Unclassified	root	N/A	15.84 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.99 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	10.89 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.97 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.98 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.90 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.97 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.99 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.99 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.99 %
Sterolibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae	0.99 %
Unclassified	root	N/A	15.84 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.90 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.97 %
Methyloversatilis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis	0.99 %
Noviherbaspirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum	0.99 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.99 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.99 %
Unclassified	root	N/A	15.84 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.90 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.97 %
Methyloversatilis universalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → Methyloversatilis universalis	0.99 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.99 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.99 %
Unclassified	root	N/A	15.84 %
unclassified Noviherbaspirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum → unclassified Noviherbaspirillum	0.99 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	9.90 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.97 %
Methyloversatilis universalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → Methyloversatilis universalis	0.99 %
Noviherbaspirillum sp. Root189	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum → unclassified Noviherbaspirillum → Noviherbaspirillum sp. Root189	0.99 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.99 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.99 %
Unclassified	root	N/A	15.84 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004009|Ga0055437_10250290	All Organisms → cellular organisms → Bacteria → Proteobacteria	580
3300004479|Ga0062595_100088769	All Organisms → cellular organisms → Bacteria → Proteobacteria	1596
3300004778|Ga0062383_10137670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	1083
3300005175|Ga0066673_10690609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	588
3300005213|Ga0068998_10066906	All Organisms → cellular organisms → Bacteria → Proteobacteria	744
3300005337|Ga0070682_100450531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	985
3300005338|Ga0068868_102304064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	514
3300005341|Ga0070691_10250281	All Organisms → cellular organisms → Bacteria	950
3300005355|Ga0070671_101765235	Not Available	549
3300005367|Ga0070667_100972631	All Organisms → cellular organisms → Bacteria → Proteobacteria	791

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.32%
Host-Associated	Host-Associated	31.68%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	23.76%
Plants	Host-Associated → Plants	31.68%
Terrestrial	Environmental → Terrestrial	44.55%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	16.83%
Marine	Environmental → Aquatic → Marine	2.97%
Peat	Environmental → Terrestrial → Peat	5.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.79%
Sediment	Environmental → Aquatic → Sediment	3.96%
Soil	Environmental → Terrestrial → Soil	38.61%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.91%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.99%
Lake	Environmental → Aquatic → Freshwater → Lake	11.88%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.99%
Loam	Environmental → Terrestrial → Soil → Loam	5.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.98%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.98%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.99%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	11.88%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.99%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.99%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.99%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	5.94%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.99%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	11.88%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.98%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.99%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055437_102502901	3300004009	Natural And Restored Wetlands	ADAAIVSRFETRPPAGLYGAPPGRQKAVIRDPELLRRLTI*
Ga0062595_1000887691	3300004479	Soil	GDQVSIAFDSRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0062383_101376701	3300004778	Wetland Sediment	EVNVTFDKSCSDPAILARLETNPPAGLYGAPPGRQKALIKDPETLRRLTI*
Ga0066673_106906091	3300005175	Soil	ADAAVLSRFDSNPPAGLYGAPLSRQKSVIRDPATLKKLTT*
Ga0068998_100669061	3300005213	Natural And Restored Wetlands	AQNCADPAILSRLETNPPAGLYGAPPDRQKALIKDPETLRRLAI*
Ga0070682_1004505311	3300005337	Corn Rhizosphere	VSIAFDSRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0068868_1023040641	3300005338	Miscanthus Rhizosphere	AMFGQPCLSLGRIAGEEVDVIFAKACTEPSVLSRLETNPPAGLYGAPPGRQKALIKDPETLRRLSI*
Ga0070691_102502813	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GIAGDQVSIAFDRRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0070671_1017652351	3300005355	Switchgrass Rhizosphere	RCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0070667_1009726313	3300005367	Switchgrass Rhizosphere	AGDQVSIAFDSRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0066699_100706623	3300005561	Soil	VVFDKSCADPSVLGRLETNPPAGLYAAPPSRQRTVIKNPEMLRKLTV*
Ga0068855_1012179512	3300005563	Corn Rhizosphere	DARCADAAVLSRLETNPPAGLYGAPPARLKTIVVNPDTRRKLTI*
Ga0066691_103616221	3300005586	Soil	PSVLGRLETNPPAGLYGAPLSRQKTVIKNPEMLRKLTV*
Ga0074472_106464562	3300005833	Sediment (Intertidal)	LNAKFGQTCLALGRTAGDEVNVTFDKSCGDPAILARLETNPPAGLYGAPPGRQKALIKDPETLRRLTI*
Ga0074470_114586411	3300005836	Sediment (Intertidal)	ILSRFETNPPAGLYGAPPGRQKAVIRDPETLRRLTV*
Ga0068870_101657453	3300005840	Miscanthus Rhizosphere	VLSRLETNPPAGLYGAPLSRQKAVIKDPEALKKLMI*
Ga0068863_1012611191	3300005841	Switchgrass Rhizosphere	VLSRLETNPPAGLYGAPPGRQKALIKDPETLRRLSI*
Ga0068860_1003366641	3300005843	Switchgrass Rhizosphere	KACTEPSVLSRLETNPPAGLYGAPPGRQKALIKDPETLRRLSI*
Ga0070717_120065682	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FDRRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0066696_104726331	3300006032	Soil	VLNRLETNPPAGLYGAPLSRQKTVIKNPETLRKLTI*
Ga0075021_102447082	3300006354	Watersheds	ATSGETVTVTFDKGCADATVLSRFESNPPAGLYGAPLSRQKSVIKDPATLKKLTT*
Ga0074050_118577401	3300006577	Soil	KGCAEASVLSRLETNPPAGLYAAPLPRQKALIKDPETLKRLSI*
Ga0079222_110790882	3300006755	Agricultural Soil	ALDKRCTEASVLNRLETNPPAGLYSAPPARQKTVIRNPDLLRKITI*
Ga0066658_103688262	3300006794	Soil	LSRLETNPPAGLYGAPAARQKTVVKNPETLRKLMI*
Ga0066658_104218832	3300006794	Soil	FDKSCADPSVLGRLETNPPAGLYGAPLSRQKTVIKNPEMLRKLTV*
Ga0075425_1009929171	3300006854	Populus Rhizosphere	GLARNRLETNPPAGLYGAPPARQKAVIKNPEVLRKLVV*
Ga0075435_1003002671	3300007076	Populus Rhizosphere	SILDKLETNPPAGLYGAPPGRQKTVIKNPETLRKLSI*
Ga0105251_106032822	3300009011	Switchgrass Rhizosphere	CFSLGRIAGEEVSVIFAKGCTEPSVLSRLETNPPAGLYGAPPGRQKALIKDPETLRRLSI
Ga0115026_107720761	3300009111	Wetland	ALSRLESNPPAGLYGAPPTRQKSVIRNPQTLSKLGVSA*
Ga0115027_103230251	3300009131	Wetland	KFDPRCADPSVLSRLETNPPAGLYGAPPGRQKSVVKNPDTLRKLTTI*
Ga0105243_102697993	3300009148	Miscanthus Rhizosphere	LARLDTNPPASLYGAPAARQKAVIKNAETLKKLMI*
Ga0105241_109493641	3300009174	Corn Rhizosphere	GVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0105238_107851303	3300009551	Corn Rhizosphere	SRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0105249_131102842	3300009553	Switchgrass Rhizosphere	DAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0074044_109348342	3300010343	Bog Forest Soil	LAGVSGAEVSVVFDKRCAEPSVLNRFETNPPAGLYGAPPGRQKAVLKNPESLRKLSI*
Ga0134125_115592121	3300010371	Terrestrial Soil	DQVSIAFDRRCADASVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0105239_104671794	3300010375	Corn Rhizosphere	CFSVRGIAGDQVSIAFDRRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI
Ga0134121_127965341	3300010401	Terrestrial Soil	LRARLETNPPAGLYRAPEGRRKAIIKNPEMLRKLV*
Ga0137362_102164811	3300012205	Vadose Zone Soil	KRCAEASVLNRLETNPPAGLYGAPLSRQKTVIKNPEMLRRLTI*
Ga0137377_111774683	3300012211	Vadose Zone Soil	SVLLRLETNPPAGLYGAPAGRQKTVVKNPETLRKLMI*
Ga0137366_108764753	3300012354	Vadose Zone Soil	VTGDPVANKFDKSCADPSVLGRIETNPPAGLYGAPLSSQKTVIKNPEMLRKLTI*
Ga0137384_102056422	3300012357	Vadose Zone Soil	AVSGERVSITFDKRCAEASVLNRLETNPPAGLYGAPLSRQKTVIKNPEMLRKLTI*
Ga0150984_1115766211	3300012469	Avena Fatua Rhizosphere	RVSITFDASCADPSILGRLETNPPAGLYGAPLSRQKTVIKNPEMLRKLTV*
Ga0164303_109409291	3300012957	Soil	RARFETNPPAALYGAPPARQKAIIKNPDTLRKLV*
Ga0164306_101852651	3300012988	Soil	RVSIAFDSRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0157374_125920122	3300013296	Miscanthus Rhizosphere	SVLSRLETNPPAGLYGAPPGRQKALIKDPETLRRLSI*
Ga0163162_105875092	3300013306	Switchgrass Rhizosphere	DGPILSRLDTNLPAGLYSAPPGRQKDVISDPETLKKLTI*
Ga0182008_107864942	3300014497	Rhizosphere	ARCADASVLSRLETNPPAGLYGAPPARLKAIVANPDTRKKLTI*
Ga0132257_1027755073	3300015373	Arabidopsis Rhizosphere	LSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI*
Ga0163161_104522222	3300017792	Switchgrass Rhizosphere	ADAPILSRLDTNLPAGLYSAPPGRQKDVISDPETLKKLTI
Ga0190266_102298611	3300017965	Soil	ADATTRLETLPPAGLYGAPPARQRAVIRSADTLRKLTV
Ga0187777_101165281	3300017974	Tropical Peatland	VLNRLETNPPAGLYGAPPGRQKTVIRNPETLRKITL
Ga0184625_106329201	3300018081	Groundwater Sediment	LNRLETNPPAGLYGAPPGRQKTVIKNPETLRKLSI
Ga0187772_114237501	3300018085	Tropical Peatland	IARFDTNPPAALYEAPPARQKWVLKDPEAVKKLSM
Ga0066669_113680182	3300018482	Grasslands Soil	GTIAGERVAIVFDPRCADPSVLGRLETNPPAGLYGAPPSRQKTVIKNPEMLRKLTV
Ga0210335_12601623	3300021346	Estuarine	VTFDKSCGNPQILSRFETNPPAGLYGAPPGRQKALISDPETLRRLTI
Ga0207671_108117131	3300025914	Corn Rhizosphere	AGDQVSIAFDRRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI
Ga0207700_102885222	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VLSRLETNPPAGLYAAPPARQKALIANPEARRKLMI
Ga0207690_102499461	3300025932	Corn Rhizosphere	AGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI
Ga0207690_113102422	3300025932	Corn Rhizosphere	QVSIAFDSRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI
Ga0207709_101314854	3300025935	Miscanthus Rhizosphere	LARLDTNPPASLYGAPAARQKAVIKNAETLKKLMI
Ga0207691_101911724	3300025940	Miscanthus Rhizosphere	IAGEEVDVIFAKACTEPSVLSRLETNPPAGLYGAPPGRQKALIKDPETLRRLSI
Ga0207679_112969351	3300025945	Corn Rhizosphere	ARCADAAVLSRLETNPPAGLYGAPPARLKTIVVNPDTRRKLTI
Ga0207651_121435431	3300025960	Switchgrass Rhizosphere	PGGRLETNPPAGLYGAPPARQKSIIKNPDTLRKLV
Ga0207658_121354762	3300025986	Switchgrass Rhizosphere	LSRFDTNPPAGLYGAPAPRQKALIKNPETLKQLSM
Ga0207676_100773546	3300026095	Switchgrass Rhizosphere	EVDVIFAKACTEPSVLSRLETNPPAGLYGAPPGRQKALIKDPETLRRLSI
Ga0207683_111848552	3300026121	Miscanthus Rhizosphere	GVASEQVTVVFDKSCSDASVMSRFETSPPAGLYSAPLPRQKAVIKDPETLRRVSI
Ga0209155_12232182	3300026316	Soil	DAAVLSRFDSNPPAGLYGAPLSRQKSVIRDPATLKKLTT
Ga0209059_11386631	3300026527	Soil	DTSILSRLETNPPAGLYGAPAGRQKTVVKNPETLRKLMI
Ga0209474_104574893	3300026550	Soil	VLNRLETNPPAGLYGAPLSRQKTVIKNPETLRKLTI
Ga0209040_102577551	3300027824	Bog Forest Soil	VLAGASGTEVSVVFDKRCADAAVLNRFETNPPAGLYGAPPGRQKAVLKNPEALRKLAT
Ga0209668_106057193	3300027899	Freshwater Lake Sediment	FDKSCGDPAILARLETNPPAGLYGAPPGRQKALIKDPETLRRLTI
Ga0268264_111327693	3300028381	Switchgrass Rhizosphere	DQVSIAFDSRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI
Ga0302298_102231711	3300029980	Fen	TAGDEVGVVFDARCNDATVLGGLDTNPPAGLYGAPPGRQKAVVRNPETRKKLMI
Ga0311365_112148162	3300029989	Fen	DATVLGGLDTNPPAGLYGAPPGRQKAVVRNPETRKKLMI
Ga0311348_104633522	3300030019	Fen	DPAVLSRLESYPPAGLYGATPGRQKTVTRNPETLRKLTT
Ga0311333_103330951	3300030114	Fen	DEVGVVFDARCNDATVLGGLDTNPPAGLYGAPPGRQKAVVRNPETRKKLMI
Ga0311349_101965143	3300030294	Fen	VLSRLETNPPAALYGAPLSRQKAVIKDPEALKKLMI
Ga0302321_1032727062	3300031726	Fen	RCGDAAILSRLETNPPAGLYGAPLARQRAVIKDPEVLKKLMI
Ga0308175_1022237622	3300031938	Soil	GQECFSVRGIAGDQVSIAFDRRCADAGVLSRLETNPPAGLYGAPPGRQRTVVKDPELLRKLTI
Ga0315278_103756811	3300031997	Sediment	GQTCLALGRTAGDEVNVTFDKSCSDPAILARLETNPPAGLYGAPPDRQKALIKDPETLRRLTI
Ga0315278_104944491	3300031997	Sediment	TGDEVSVIFDKNCGEPTILSRLETNPPAGLYGAPPSRQKALIKDPETLRRLTI
Ga0315278_105184033	3300031997	Sediment	GEAAVLSRLETNPPAGLYGAPPGRQKAVLRDPETLRKLVI
Ga0315274_119037231	3300031999	Sediment	CFSLGPIAGYEVNVVFAPNCTEPAILARLETNPPAGLYGAPTARQKALIKDPETLRRLVI
Ga0308173_110046593	3300032074	Soil	VVSRLETNPPASLYNAPAQRQKAIVKNPDTLKKLLI
Ga0315292_105035553	3300032143	Sediment	EILARLETNPPAGLYGAPPGRQKALIKDPETLRRLTI
Ga0315281_114121221	3300032163	Sediment	AVLSRLETNPPAGLYGAPSGRQKAVIRDPETLRRLTI
Ga0315283_103161951	3300032164	Sediment	GRIAGDEVNVNFDKNCGDPTILSRLETNPPAGLYGAPPSRQKALIKDPETLRRLTI
Ga0315268_111021011	3300032173	Sediment	LGNVAGDQVSVTFDQQRCGDAAVLSRFETNPPAGLYGAPPGRKKAVIRDPETLRRLTI
Ga0315268_112993321	3300032173	Sediment	AVLSRLETNPPAALYGAPLSRQKAVIKDPEALKKLMI
Ga0307471_1017430832	3300032180	Hardwood Forest Soil	NSAVLGRLESNPPAGLYGAPPQRQKSVIKDPGTLRKLST
Ga0315270_111404392	3300032275	Sediment	AVVFDKQRCGDAAVLSRLETNPPAGLYGAPPGRQKAVIRDPEMLRRLTI
Ga0315287_112094293	3300032397	Sediment	TFDKSCSDPAILARLETNPPAGLYGAPPDRQKALIKDPETLRRLTI
Ga0315275_115633371	3300032401	Sediment	NVTFDKSCSDPAILARLETNPPAGLYGAPPGRQKALIKDPETLRRLTI
Ga0316603_100495521	3300033413	Soil	VLSRLESNPPAGLYGASPTRQKSVIRNPQTLSKLGVSA
Ga0316625_1026186922	3300033418	Soil	DAGVLSRLESNPPAGLYGASPTRQKSVIRNPQTLSKLGVSA
Ga0316629_116822211	3300033483	Soil	EVNVTFDKSCSDPAILARLETNPPAGLYGAPPGRQKALIKDPETLRRLTI
Ga0316624_107120751	3300033486	Soil	DGLVRARLESNPPAGLYGAPPGRQKAVIKNPEMLRKLVV
Ga0316628_1000502228	3300033513	Soil	AFDARCADGLARGRLESNPPAGLYGAPPGRQKAVIKNPELLRKLVV
Ga0316616_1005995201	3300033521	Soil	SRLETNPPAALYGAPPARQKSVIRNPETLSKLGVTA
Ga0370509_0328909_1_111	3300034159	Untreated Peat Soil	MGRFETAPPAGLYGAPPARQKSVIKNPETLKRITTI