Metagenome / Metatranscriptome Family F103345

Basic Information
Family ID	F103345
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	57 residues
Representative Sequence	QFVGSRFAIRAEAKWLPILINPEVGAWACGTVGVGGCLVVLTGPLTQQFELSVGPVVRF
Number of Associated Samples	85
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (9.901 % of family members)
Environment Ontology (ENVO)	Unclassified (53.465 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.287 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1L01_07182500 2L01_05725070 3Ga0055438_100939203 4Ga0062593_1000731041 5Ga0062593_1028133951 6Ga0063356_1045115891 7Ga0070676_112923092 8Ga0070690_1016797002 9Ga0066388_1066566742 10Ga0070677_107937081 11Ga0068868_1009376541 12Ga0068868_1010283651 13Ga0070691_102200201 14Ga0070668_1018673431 15Ga0070675_1009017271 16Ga0070671_1013484681 17Ga0070674_1021266822 18Ga0070673_1007118683 19Ga0070673_1014571391 20Ga0070663_1021008701 21Ga0070685_112438211 22Ga0073909_106476711 23Ga0070684_1011629891 24Ga0068853_1006582583 25Ga0070664_1008503931 26Ga0068852_1012206991 27Ga0068864_1000989111 28Ga0068864_1021816432 29Ga0068861_1026242321 30Ga0066903_1017771742 31Ga0068851_107463222 32Ga0068870_106240012 33Ga0068863_1023419502 34Ga0068863_1026229132 35Ga0068860_1006034991 36Ga0075364_101940382 37Ga0068871_1001751421 38Ga0074059_117248531 39Ga0075420_1008638051 40Ga0068865_1008870181 41Ga0074063_141515233 42Ga0075419_114613141 43Ga0105240_116244021 44Ga0111538_110547102 45Ga0105242_123487312 46Ga0105248_122851561 47Ga0105248_132154011 48Ga0105249_102945274 49Ga0105249_134019891 50Ga0134122_122246641 51Ga0134123_108452813 52Ga0134123_123927632 53Ga0134123_125269951 54Ga0150985_1002572222 55Ga0157342_10788462 56Ga0157296_101764472 57Ga0157298_101409571 58Ga0164299_103769021 59Ga0164308_107605431 60Ga0164305_115949821 61Ga0157378_120006162 62Ga0157380_123662182 63Ga0157380_132649131 64Ga0157377_105682641 65Ga0157379_111176852 66Ga0132258_119983982 67Ga0132258_136605702 68Ga0132256_1014214161 69Ga0132257_1016450503 70Ga0132257_1046002441 71Ga0132255_1003213581 72Ga0132255_1042417013 73Ga0163161_119474322 74Ga0187788_104423302 75Ga0190270_101878412 76Ga0190274_105586541 77Ga0207694_118343962 78Ga0207659_114873482 79Ga0207659_115418351 80Ga0207686_104389102 81Ga0207670_106658702 82Ga0207704_100282751 83Ga0207691_117216722 84Ga0207651_108994163 85Ga0207668_110673292 86Ga0207640_121316561 87Ga0207641_103221314 88Ga0207648_106843264 89Ga0207675_1019157841 90Ga0207675_1026785132 91Ga0207683_116930272 92Ga0268264_104743043 93Ga0247822_115137112 94Ga0307503_105464222 95Ga0310887_101020672 96Ga0307469_125064341 97Ga0318500_101106501 98Ga0306926_101042591 99Ga0318559_101754712 100Ga0310890_108851502 101Ga0364933_070223_1_189
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1L01_07182500 2Ga0055438_100939203 3Ga0062593_1028133951 4Ga0063356_1045115891 5Ga0070690_1016797002 6Ga0066388_1066566742 7Ga0068868_1009376541 8Ga0070663_1021008701 9Ga0070685_112438211 10Ga0070684_1011629891 11Ga0068852_1012206991 12Ga0068861_1026242321 13Ga0066903_1017771742 14Ga0068851_107463222 15Ga0075364_101940382 16Ga0105248_122851561 17Ga0134122_122246641 18Ga0157342_10788462 19Ga0157380_123662182 20Ga0157379_111176852 21Ga0132255_1042417013 22Ga0187788_104423302 23Ga0207694_118343962 24Ga0307503_105464222 25Ga0318500_101106501
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0207691_117216722 2Ga0055438_100939203 3Ga0062593_1028133951 4Ga0063356_1045115891 5Ga0070676_112923092 6Ga0070677_107937081 7Ga0068868_1010283651 8Ga0070671_1013484681 9Ga0070673_1007118683 10Ga0070673_1014571391 11Ga0070684_1011629891 12Ga0068852_1012206991 13Ga0068861_1026242321 14Ga0075364_101940382 15Ga0075419_114613141 16Ga0105240_116244021 17Ga0111538_110547102 18Ga0105248_122851561 19Ga0105248_132154011 20Ga0105249_102945274 21Ga0105249_134019891 22Ga0134122_122246641 23Ga0150985_1002572222 24Ga0157342_10788462 25Ga0157380_123662182 26Ga0132258_119983982 27Ga0132256_1014214161 28Ga0132257_1016450503 29Ga0132257_1046002441 30Ga0132255_1042417013 31Ga0187788_104423302 32Ga0190270_101878412 33Ga0207694_118343962 34Ga0207670_106658702 35Ga0207675_1019157841 36Ga0207683_116930272 37Ga0310887_101020672 38Ga0306926_101042591 39Ga0364933_070223_1_189
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 48.28% Coil/Unstructured: 51.72%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07519	Tannase	10.89
PF11964	SpoIIAA-like	9.90
PF12729	4HB_MCP_1	3.96
PF13505	OMP_b-brl	3.96
PF01436	NHL	2.97
PF12681	Glyoxalase_2	1.98
PF07687	M20_dimer	1.98
PF08818	DUF1801	1.98
PF12796	Ank_2	1.98
PF03551	PadR	1.98

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.98
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.98
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.98
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.98
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.98
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.98
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.99
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.99
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.99
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	35.64%
Host-Associated	Host-Associated	64.36%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.99%
Plants	Host-Associated → Plants	64.36%
Terrestrial	Environmental → Terrestrial	34.65%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.99%
Marine	Environmental → Aquatic → Marine	0.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	30.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.68%
Roots	Host-Associated → Plants → Roots	1.98%
Soil	Environmental → Terrestrial → Soil	33.66%

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.99%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.77%
Loam	Environmental → Terrestrial → Soil → Loam	6.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.84%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	9.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 85 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_07182500	2170459006	Grass Soil	LKQFLGSRFALRAEAKWLPILIDPEVGAWACGTVAVGGCLVVLTGPLTQQFELSFGPVVR
L01_05725070	2170459006	Grass Soil	GSRFAIRAEAKWLPILINPEVGAWACGTVGVGGCFVVLTGPMTQQFELSVGPVLRF
Ga0055438_100939203	3300003995	Natural And Restored Wetlands	KQFLGSRFAIRAEAQWLPIVVEPSVSGFACGAIQPGGCLVLLSGRLAQQFHLSVGPAVRF
Ga0062593_1000731041	3300004114	Soil	QFLGSRFAIRAEVKWLPILIDPEVGAWACGTVGVGGCLVVLTGPMTQQFELSVGPVVRF*
Ga0062593_1028133951	3300004114	Soil	GAGLKQFLGSRLAIRAEAQWLPILVEPAVSGFACGTIQFGGCLVVLNSELVQQYQITIGPVVRF*
Ga0063356_1045115891	3300004463	Arabidopsis Thaliana Rhizosphere	LAIRAEAGWLPIWVAPEVGGFACGTIGVGGCFVVLDGTLMQQYEMSIGPVIRF*
Ga0070676_112923092	3300005328	Miscanthus Rhizosphere	FSFGFGAGLKQFLGSRFALRAEAEWLPIVVEPSVDGFACGTIQFGGCLVILNGELVQQFQLSIGPVVRF*
Ga0070690_1016797002	3300005330	Switchgrass Rhizosphere	APEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF*
Ga0066388_1066566742	3300005332	Tropical Forest Soil	PIWIDPEVGAWACGTVGIGGCIVVLNGRLTQQFELSVGPVVRF*
Ga0070677_107937081	3300005333	Miscanthus Rhizosphere	FGAGLKQFLGSRLAIRAEAEWLPILIEPSVSGFACGTIQFGGCLVVLNGELVQQFHFSIGPVIRF*
Ga0068868_1009376541	3300005338	Miscanthus Rhizosphere	FSFGFGGGLKQFLGSRFGIRAEAQWLPILVDPSVSGFACGAVQFGGCLVLLSGDLVQQFQLSIGPVVRF*
Ga0068868_1010283651	3300005338	Miscanthus Rhizosphere	FGAGLKQFVGSRFAIRGDAQWLPIVVEPSVSGFACGTIQYGGCLVVLNGELVQQFQLSVGPVVRF*
Ga0070691_102200201	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	SRFAIRAEAKWLPILIEPEVGGWACGTVGVGGCLVVLNGRLMQQFELSIGPVVRF*
Ga0070668_1018673431	3300005347	Switchgrass Rhizosphere	KWLPILIDPEVGAWACGTVGVGGCLVVLSGPLTQQFELSVGPVLRF*
Ga0070675_1009017271	3300005354	Miscanthus Rhizosphere	QFVGSRFALRGEVQWLPILIDPEVGAWACGTAGVGGCLVVLTGRLTQQFELSVGPVLRF*
Ga0070671_1013484681	3300005355	Switchgrass Rhizosphere	FSFGFGGGLKQFLGSRFGIRAEAQWLPILVDPSVSGFACGTIQLGGCLVVLSGDLVQQFQLSIGPVVRF*
Ga0070674_1021266822	3300005356	Miscanthus Rhizosphere	AGLKQFLGSRLAIRAEAQWVPIVVEPSVSGFACGTIQVGGCLVVLNGELVQQFHLSIGPVVRF*
Ga0070673_1007118683	3300005364	Switchgrass Rhizosphere	WLPILIAPEVSSWACGVVGAGGCVVVLSGPVVQQFELSIGPVVRF*
Ga0070673_1014571391	3300005364	Switchgrass Rhizosphere	AGLKQFLGSRLAIRAEAQWLPIVLDPSVSGFACGTIQVGGCLVLLNGELVQQFQLSIGPVLRF*
Ga0070663_1021008701	3300005455	Corn Rhizosphere	DPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVVRF*
Ga0070685_112438211	3300005466	Switchgrass Rhizosphere	FGTGLKQFLGSHFAIKAEAKWLPILIAPEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF*
Ga0073909_106476711	3300005526	Surface Soil	WLPILIDPEVGAWACGTLAGGGCLVVLTGPLTQQFELSVGPVVRF*
Ga0070684_1011629891	3300005535	Corn Rhizosphere	KWLPILLDPHVRAWACGTVGVGGCLVVVSGPVTQQFEFSVGPVVRF*
Ga0068853_1006582583	3300005539	Corn Rhizosphere	RFSFGFGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLHGELVQQFQLSIGPVVRF*
Ga0070664_1008503931	3300005564	Corn Rhizosphere	GFGAGLKQFLGSWFAIRAEAQWLPIVVEPSVSGFACGTIQFGGCLVVLNGELVQQFQLSIGPVVRF*
Ga0068852_1012206991	3300005616	Corn Rhizosphere	AKWLPILIDPEVGAWACGTAAVGACLVVLTGSLTQQFELSVGPVVRF*
Ga0068864_1000989111	3300005618	Switchgrass Rhizosphere	AIRAEAKWLPILIDPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVVRF*
Ga0068864_1021816432	3300005618	Switchgrass Rhizosphere	FALRGEVQWLPILIDPEVGSWACGTAGVGGCLVVLTGRLTQQFELSVGPVLRF*
Ga0068861_1026242321	3300005719	Switchgrass Rhizosphere	QFLGSKFAIRAEAHWLPILIEPEVGSFGCGTINVGGCFVVLNGKLTQQFEMSIGPVVSF*
Ga0066903_1017771742	3300005764	Tropical Forest Soil	LVDPEVNSFACGTGPVGGCLVLLDGRLTQQFEVSIGPVVRF*
Ga0068851_107463222	3300005834	Corn Rhizosphere	GQRFAIRAEAKWLPILIDPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVVRF*
Ga0068870_106240012	3300005840	Miscanthus Rhizosphere	GFGAGLKQFVGSRFALRGEVQWLPILIDPEVGSWACGTAGVGGCLVVLTGRLTQQFELSVGPVLRF*
Ga0068863_1023419502	3300005841	Switchgrass Rhizosphere	AEAKWLPILIAPEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF*
Ga0068863_1026229132	3300005841	Switchgrass Rhizosphere	FGFGAGLKQFLGSRFAIRADAQWLPVLVDPSVGRFACGTIQFGGCLVLLSGELLQQFQLTIGPVVRF*
Ga0068860_1006034991	3300005843	Switchgrass Rhizosphere	AEAKWLPILIDPEVGGWACGTIGVGGCFAVLTGPLTQQFELSVGPVLRF*
Ga0075364_101940382	3300006051	Populus Endosphere	RFAIRAEASWLPILVDPEVSTFACGTGPIGGCLVVLNGRLTQQFEVSVGPVVRF*
Ga0068871_1001751421	3300006358	Miscanthus Rhizosphere	AGLKQFVGSRFAIRAEAKWLPILIAPEVSSWACGVVGVGGCIVVLTGPAAQQFELSVGPVLRF*
Ga0074059_117248531	3300006578	Soil	LAIRAEAKWLPILIDPEVGAWACGTVGVGGCLVVLTGPAAQQFELSVGPVVRF*
Ga0075420_1008638051	3300006853	Populus Rhizosphere	FGFGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLNGELVQQFQVSIGPVVRF*
Ga0068865_1008870181	3300006881	Miscanthus Rhizosphere	PWACGTVGVNGCVVFLSGPLTQQFEVSVGPVVRF*
Ga0074063_141515233	3300006953	Soil	RFAIRAEAKWLPILIDPEVGAWACGTLAGGGCLVVLTGPLTQQFELSVGPVVRF*
Ga0075419_114613141	3300006969	Populus Rhizosphere	LGPRLAIRAEVQWLPILINPEVGAWACGTVGVGGCLVVLTGPLTQQFEMSVGPVLRF*
Ga0105240_116244021	3300009093	Corn Rhizosphere	AEAKWLPILIDPQVGSWACGTVGVGGCLVVLNGRLTQQFEVSVGPVVRF*
Ga0111538_110547102	3300009156	Populus Rhizosphere	AGLKQFLGSRLAIRAEAQWLPIVFDPSVSGFACGTIQFGGCFVVLSGELVQQFQLSIGPVVRF*
Ga0105242_123487312	3300009176	Miscanthus Rhizosphere	FGAGLKQFLGSRLAIRAEAQWLPIVVEPSVSGFACGTIQFGGCLVVLNGELVQQFQLSIGPVVRF*
Ga0105248_122851561	3300009177	Switchgrass Rhizosphere	GCGPGIKKFMGSRFALRGEVQWLPILIDHEVGAWACGTAGVGGCLVVLTGRLTQQFELSVGPVLRF*
Ga0105248_132154011	3300009177	Switchgrass Rhizosphere	FSFGFGAGLKQFLGSRFAIRADAQWLPVLVDPSVGRFACGTIQFGGCLVLLSGELLQQFQLTIGPVVRF*
Ga0105249_102945274	3300009553	Switchgrass Rhizosphere	RFSFGFGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLNGELVQQFQLSIGPVVKF*
Ga0105249_134019891	3300009553	Switchgrass Rhizosphere	KQFLGSRFAIRAEAKWLPILIDPEVGGWACGTIGVGGCFAVLTGPLTQQFELSVGPVLRF
Ga0134122_122246641	3300010400	Terrestrial Soil	IRAEAHWLPIWIEPEVGSFACGTVGVDGCFVILTGRTTQQFELRIGPVVRF*
Ga0134123_108452813	3300010403	Terrestrial Soil	SRFAIRAEAKWLPILIDPEVGGWACGTIGVGGCFAVLTGPLTQQFELSVGPVLRF*
Ga0134123_123927632	3300010403	Terrestrial Soil	PILIDPEVGAWACGTAGVGGCLVVLTGPLTQQFEFSVGPVVRF*
Ga0134123_125269951	3300010403	Terrestrial Soil	WLPILIDPEVGAWACGTVGAGGCLVVLTGRLTQQFELSVGPVVRF*
Ga0150985_1002572222	3300012212	Avena Fatua Rhizosphere	RFSFGFGGGLKQFLGSRFAIRAEAQWLPMLVEPSVSGFGCGTVQYGGCLVLLNGELVQQFQLSIGPVVRF*
Ga0157342_10788462	3300012507	Arabidopsis Rhizosphere	RLAIRAEGHWLPIWIDPEVGGFGCNSVTGGCLVFLNGRLTQQFELSVGPVVRF*
Ga0157296_101764472	3300012905	Soil	GFGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLHGELVQQFQLSIGPVVRF*
Ga0157298_101409571	3300012913	Soil	ILIDPQVGPWACGTVGVNGCVVFLSGPLTQQFEISVGPVVRF*
Ga0164299_103769021	3300012958	Soil	KWLPILINPEVGAWACGTAAVGGCLVVLTGSLTQQFELSIGPVVRF*
Ga0164308_107605431	3300012985	Soil	KQFVGSRFAIRAEAKWLPILINPEVGAWACGTAAVGGCLVVLTGSLTQQFELSIGPVVRF
Ga0164305_115949821	3300012989	Soil	SRFAIRAEAKWLPILIDPEVGAWACGTVGVSGCLVVLTGSLTQQFELSVGPVVRF*
Ga0157378_120006162	3300013297	Miscanthus Rhizosphere	AEAKWLPIRIDPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVVRF*
Ga0157380_123662182	3300014326	Switchgrass Rhizosphere	LDDGFIRFSFGFGAGLKQFLASRFAIRAEAKWLPILIEPEVGGWACGTVGVGGCLVVLNGRLMQQFELSVGPVVRF*
Ga0157380_132649131	3300014326	Switchgrass Rhizosphere	PILIDPEVGAWACGTVGAGGCLVVLTGRLTQQFELSVGPVVRF*
Ga0157377_105682641	3300014745	Miscanthus Rhizosphere	IDPEVGAWACGTVGFGGCLVVLTGPLTQQFELSVGPVVRF*
Ga0157379_111176852	3300014968	Switchgrass Rhizosphere	IRAEAKWLPILIAPEVSSWACGVVGVGGCIVVLTGPAAQQFELSVGPVLRF*
Ga0132258_119983982	3300015371	Arabidopsis Rhizosphere	GLKQFLGRRFAIRAEGKWLPILIDPEVGAWVCGTVGVGGCIVVLTGSLTQQFELSIGPVVRF*
Ga0132258_136605702	3300015371	Arabidopsis Rhizosphere	RFSFGFGAGLKQFLGSRFAIRAEAKWLPILIDPEVGAWACGTVGVGGCLAVLTGSLTQQFELSVGPTVRF*
Ga0132256_1014214161	3300015372	Arabidopsis Rhizosphere	VSWLPIWIDPEVGAFACGTIGVGGCVVVLNGRLTQQFELSVGPVVRF*
Ga0132257_1016450503	3300015373	Arabidopsis Rhizosphere	LGAGLKQFVGTRLAIRAEAQWLPILVAPSVSGFACGTVQIGGCLVVLNGKLVQQFLLSVGPVVRF*
Ga0132257_1046002441	3300015373	Arabidopsis Rhizosphere	QFFGQRFAIRAEAKWLPILIDTQVGPWACGTIGVNRCVVFLSGPLTQQFEISVGPVVRF*
Ga0132255_1003213581	3300015374	Arabidopsis Rhizosphere	LPIWIDTEVGAFACGTIGVGGCVVVLNGRLTQQFELSVGPVVRF*
Ga0132255_1042417013	3300015374	Arabidopsis Rhizosphere	TRLSFGLGAGLKQFIGPHLAIRAEAKWLPIWINPEVGAFACGAAGVGGCVVVLTGPLTEQFELSVGPVVRF*
Ga0163161_119474322	3300017792	Switchgrass Rhizosphere	QRFAIRAEAKWLPILIDPQVGPWACGTVGVNGCVVFLSGPLTQQFEISVGPVVRF
Ga0187788_104423302	3300018032	Tropical Peatland	HWLPIWIEPEIGSFGCNSVTGGCFLVLHGRLTQQFEMSVGPVLRF
Ga0190270_101878412	3300018469	Soil	FGGGLKQFLGSRFAIRAEAKWLPILIDPKVGSWACGTVGVGGCLVVLSGPLAQQFELSVGPVVRF
Ga0190274_105586541	3300018476	Soil	RFSFGFGAGLKQFVGRRFAIRAEAKWLPILIEPEVGGWACGTVGVGGCLVVLNGRLMQQFELSVGPVVRF
Ga0207694_118343962	3300025924	Corn Rhizosphere	GLKQFIGRRFAIRAEATWLPIVVEPSVGGFACGTLQAGGCLVVLDGELASQFQLTIGPVVRF
Ga0207659_114873482	3300025926	Miscanthus Rhizosphere	LPILIDPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVARF
Ga0207659_115418351	3300025926	Miscanthus Rhizosphere	RADAKWLPILIDPEVGAWACGTVGFGGCLVVLTGPLTQQFELSVGPVVRF
Ga0207686_104389102	3300025934	Miscanthus Rhizosphere	GFIRFSFGFGAGLKQFLGSRFAIRAEAKWLPILIEPEVGGWACGTVGVGGCLVVLNGRLMQQFELSIGPVVRF
Ga0207670_106658702	3300025936	Switchgrass Rhizosphere	GLKQFLGSRFAIRAEAKWLPILINPEVGAFACGTVRLGGCLVVLTGPVTQQFEISVGPVVRF
Ga0207704_100282751	3300025938	Miscanthus Rhizosphere	TGLKQFLGSHFAIKAEAKWLPILIAPEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF
Ga0207691_117216722	3300025940	Miscanthus Rhizosphere	QFVGSRFAIRAEAKWLPILINPEVGAWACGTVGVGGCLVVLTGPLTQQFELSVGPVVRF
Ga0207651_108994163	3300025960	Switchgrass Rhizosphere	WLPILIAPEVSSWACGVVGAGGCVVVLSGPVVQQFELSIGPVVRF
Ga0207668_110673292	3300025972	Switchgrass Rhizosphere	GPWACGTVGVNGCVVFLSGPLTQQFEISVGPVVRF
Ga0207640_121316561	3300025981	Corn Rhizosphere	FGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLHGELVQQFQLSIGPVVRF
Ga0207641_103221314	3300026088	Switchgrass Rhizosphere	FLGSHFAIKAEAKWLPILIAPEVSSWACGVVGAGGCLVVLTGPAVQQFELSIGPVVRF
Ga0207648_106843264	3300026089	Miscanthus Rhizosphere	EVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF
Ga0207675_1019157841	3300026118	Switchgrass Rhizosphere	LGSRFAIRAEAKWLPIAIDPQVGSWACGTVGFGGCFVVLNGKLTQQFELSVGPVFRF
Ga0207675_1026785132	3300026118	Switchgrass Rhizosphere	QFLGSKFAIRAEAHWLPILIEPEVGSFGCGTINVGGCFVVLNGKLTQQFEMSIGPVVSF
Ga0207683_116930272	3300026121	Miscanthus Rhizosphere	WLPILVDPEVGAFACGTVGIGGCLVVLNGELTQQFELSVGPVVRF
Ga0268264_104743043	3300028381	Switchgrass Rhizosphere	QFLGSHFAIKAEAKWLPILIAPEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF
Ga0247822_115137112	3300028592	Soil	LKQFLGSWLAIRAEAQWLPIVVEPSVSGFACGTIQFGGCLVVLNGELVQQFQLSIGPVVR
Ga0307503_105464222	3300028802	Soil	ILIDPQVGPWACGPVGIGGCVVVVSGPLAQQFEMSVGPVLRF
Ga0310887_101020672	3300031547	Soil	RFSFGFGAGLKQFLGSRLAIRAEAQWLPIVVEPSVEGFACGTVQFGGCLVILQGELVQQFQLSIGPVVRF
Ga0307469_125064341	3300031720	Hardwood Forest Soil	GFAAGLKEFLGSRFAIRAEAKWLPILIDPEVGAWACGTVGVGGCLVVLNGPLTQQFELSVGPVVRF
Ga0318500_101106501	3300031724	Soil	GLKQFLGSKLAMRAEADWLPILIEPEVGAWACGTLGLGGCVVVLNGRLTQQFQLSIGPTVRF
Ga0306926_101042591	3300031954	Soil	GLKQFLGSKLAMRAEADWLPILIEPEVGAWACGTLGLGGCVVILNGRLTQQFQLSIGPTVRF
Ga0318559_101754712	3300032039	Soil	FLGSKLAMRAEADWLPILIEPEVGAWACGTLGLGGCVVILNGRLTQQFQLSIGPTVRF
Ga0310890_108851502	3300032075	Soil	ILIDPQVGPWACGTVGVGGCVVFLTGPLTQQFELSIGPVVRF
Ga0364933_070223_1_189	3300034150	Sediment	GLKQFLGSHFAIKAEAKWLPILIAPEVSSWACGVVGVGGCIVVLTGPAAQQFELSIGPVVRF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103345

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences