NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F103283

Metagenome / Metatranscriptome Family F103283

Go to section:
Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F103283
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 50 residues
Representative Sequence MTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLEC
Number of Associated Samples 87
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 100.00 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(56.436 % of family members)
Environment Ontology (ENVO) Unclassified
(49.505 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(49.505 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003505|JGIcombinedJ51221_10198666Not Available814Open in IMG/M
3300004101|Ga0058896_1008360Not Available700Open in IMG/M
3300004121|Ga0058882_1015941Not Available782Open in IMG/M
3300004130|Ga0058895_1121533Not Available746Open in IMG/M
3300004133|Ga0058892_1325232Not Available750Open in IMG/M
3300005640|Ga0075035_1046974Not Available714Open in IMG/M
3300005644|Ga0075036_1788768Not Available501Open in IMG/M
3300005650|Ga0075038_10103513Not Available731Open in IMG/M
3300006426|Ga0075037_1253715Not Available806Open in IMG/M
3300006638|Ga0075522_10440209Not Available611Open in IMG/M
3300010858|Ga0126345_1193391Not Available525Open in IMG/M
3300010859|Ga0126352_1059986Not Available766Open in IMG/M
3300010867|Ga0126347_1390008Not Available766Open in IMG/M
3300019176|Ga0184596_115560Not Available607Open in IMG/M
3300019178|Ga0184583_100271Not Available660Open in IMG/M
3300019184|Ga0184590_112169Not Available730Open in IMG/M
3300019185|Ga0184587_117014Not Available704Open in IMG/M
3300019187|Ga0184584_124640Not Available595Open in IMG/M
3300019240|Ga0181510_1436893Not Available756Open in IMG/M
3300019256|Ga0181508_1051287Not Available721Open in IMG/M
3300019258|Ga0181504_1072761Not Available536Open in IMG/M
3300019258|Ga0181504_1090741Not Available535Open in IMG/M
3300021860|Ga0213851_1822024Not Available769Open in IMG/M
3300022499|Ga0242641_1014074Not Available752Open in IMG/M
3300022500|Ga0242643_106077Not Available797Open in IMG/M
3300022501|Ga0242645_1025196Not Available545Open in IMG/M
3300022502|Ga0242646_1011548Not Available747Open in IMG/M
3300022502|Ga0242646_1018483Not Available643Open in IMG/M
3300022502|Ga0242646_1026561Not Available576Open in IMG/M
3300022503|Ga0242650_1007501Not Available761Open in IMG/M
3300022503|Ga0242650_1021264Not Available545Open in IMG/M
3300022504|Ga0242642_1040747Not Available700Open in IMG/M
3300022505|Ga0242647_1031988Not Available570Open in IMG/M
3300022511|Ga0242651_1016125Not Available746Open in IMG/M
3300022522|Ga0242659_1076198Not Available632Open in IMG/M
3300022523|Ga0242663_1035822Not Available822Open in IMG/M
3300022527|Ga0242664_1057900Not Available723Open in IMG/M
3300022528|Ga0242669_1034672Not Available805Open in IMG/M
3300022528|Ga0242669_1044179Not Available743Open in IMG/M
3300022528|Ga0242669_1078652Not Available608Open in IMG/M
3300022533|Ga0242662_10107641Not Available802Open in IMG/M
3300022709|Ga0222756_1035350Not Available703Open in IMG/M
3300022711|Ga0242674_1019899Not Available778Open in IMG/M
3300022714|Ga0242671_1036679Not Available765Open in IMG/M
3300022715|Ga0242678_1027120Not Available734Open in IMG/M
3300022717|Ga0242661_1046790Not Available796Open in IMG/M
3300022717|Ga0242661_1050442Not Available776Open in IMG/M
3300022717|Ga0242661_1162213Not Available508Open in IMG/M
3300022718|Ga0242675_1107396Not Available544Open in IMG/M
3300022720|Ga0242672_1031564Not Available805Open in IMG/M
3300022720|Ga0242672_1129647Not Available524Open in IMG/M
3300030529|Ga0210284_1184599Not Available739Open in IMG/M
3300030529|Ga0210284_1186330Not Available825Open in IMG/M
3300030531|Ga0210274_1174878Not Available804Open in IMG/M
3300030532|Ga0210290_1001500Not Available811Open in IMG/M
3300030535|Ga0210285_1196594Not Available679Open in IMG/M
3300030535|Ga0210285_1429362Not Available667Open in IMG/M
3300030539|Ga0210281_1545807Not Available520Open in IMG/M
3300030572|Ga0210258_10777554Not Available793Open in IMG/M
3300030577|Ga0210260_10102591Not Available801Open in IMG/M
3300030582|Ga0210261_1057604Not Available774Open in IMG/M
3300030588|Ga0210283_1169702Not Available728Open in IMG/M
3300030596|Ga0210278_1068122Not Available729Open in IMG/M
3300030602|Ga0210254_10244117Not Available726Open in IMG/M
3300030603|Ga0210253_11143091Not Available526Open in IMG/M
3300030626|Ga0210291_11967709Not Available752Open in IMG/M
3300030629|Ga0210268_1321962Not Available531Open in IMG/M
3300030730|Ga0307482_1121212Not Available737Open in IMG/M
3300030730|Ga0307482_1295531Not Available520Open in IMG/M
3300030740|Ga0265460_11063157Not Available756Open in IMG/M
3300030762|Ga0265775_104114Not Available809Open in IMG/M
3300030763|Ga0265763_1015652Not Available754Open in IMG/M
3300030776|Ga0075396_1032579Not Available514Open in IMG/M
3300030777|Ga0075402_12510866Not Available713Open in IMG/M
3300030778|Ga0075398_12246478Not Available715Open in IMG/M
3300030813|Ga0265750_1032655Not Available723Open in IMG/M
3300030814|Ga0265741_107193Not Available742Open in IMG/M
3300030816|Ga0265729_101227Not Available794Open in IMG/M
3300030834|Ga0265738_103204Not Available649Open in IMG/M
3300030844|Ga0075377_10018586Not Available523Open in IMG/M
3300030847|Ga0075405_10009873Not Available690Open in IMG/M
3300030849|Ga0075393_10074310Not Available529Open in IMG/M
3300030850|Ga0075387_10019938Not Available685Open in IMG/M
3300030853|Ga0075372_10073865Not Available523Open in IMG/M
3300030862|Ga0265753_1038076Not Available808Open in IMG/M
3300030862|Ga0265753_1070974Not Available658Open in IMG/M
3300030875|Ga0265727_103668Not Available521Open in IMG/M
3300030879|Ga0265765_1039198Not Available625Open in IMG/M
3300030885|Ga0265743_105806Not Available771Open in IMG/M
3300030888|Ga0265769_120290Not Available524Open in IMG/M
3300030888|Ga0265769_122819Not Available506Open in IMG/M
3300030923|Ga0138296_1608640Not Available523Open in IMG/M
3300030935|Ga0075401_10070701Not Available506Open in IMG/M
3300030966|Ga0075383_10010851Not Available765Open in IMG/M
3300030970|Ga0075381_10054671Not Available547Open in IMG/M
3300031011|Ga0265774_103105Not Available652Open in IMG/M
3300031016|Ga0265732_101491Not Available765Open in IMG/M
3300031018|Ga0265773_1013131Not Available735Open in IMG/M
3300031040|Ga0265754_1010143Not Available736Open in IMG/M
3300031042|Ga0265749_101358Not Available757Open in IMG/M
3300031043|Ga0265779_105631Not Available689Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil56.44%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil23.76%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.95%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland3.96%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil3.96%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil2.97%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.98%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.99%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.99%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004101Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004121Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004130Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF226 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004133Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF220 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005640Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_052 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005644Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_053 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005650Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006426Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_054 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300010858Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010859Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010867Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300019176Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019178Soil microbial communities from Bohemian Forest, Czech Republic ? CSU1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019184Soil microbial communities from Bohemian Forest, Czech Republic ? CSA2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019185Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019187Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019240Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019256Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019258Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021860Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022499Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022500Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022501Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022502Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022503Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022504Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022505Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022511Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022523Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022528Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022709Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022711Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022714Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022715Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022717Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022718Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022720Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300030529Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE013SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030531Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO038SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030532Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE108SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030535Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO749-VDE026SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030539Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO151-VCO111SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030572Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR103SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030577Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO131-ARE010SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030582Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE022SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030588Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE011SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030596Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030602Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030603Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR017SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030626Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030629Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030740Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assemblyEnvironmentalOpen in IMG/M
3300030762Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030763Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030776Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030777Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030778Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030813Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030814Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030816Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030834Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030844Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030847Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030849Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030850Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030853Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030862Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030875Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030885Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030888Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030923Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300030935Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030966Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030970Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031011Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031016Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031018Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031040Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031042Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031043Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1019866613300003505Forest SoilMTDSVRPPPEELVNPASGLPPFRDGLRGVEPTSLPQPFPSHLGLSLKCRWLSCVHQMHSS
Ga0058896_100836013300004101Forest SoilMTDSVRTPPEKLVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLE
Ga0058882_101594113300004121Forest SoilVRAPPEELVNPASGLHLLRDELRGVEPTSLPQPFPSHLGLSLER
Ga0058895_112153313300004130Forest SoilVRQLPEEPVNTASGLRPLRDELRGVEPTSLPQPFPSHLGLS
Ga0058892_132523223300004133Forest SoilVRAPPEELVNPASGLHLLRDELRGVEPTSLPQPFPSHLGLSL
Ga0075035_104697413300005640Permafrost SoilMTGDVRPSPEELVNPASSFRLLRNGLRGVEPTSLARPFPSHLGLSLE
Ga0075036_178876823300005644Permafrost SoilMTDRVRPRPEELVNPASSLCLLRNRLRGVEPTSLARPFPGYPGLSLEHLS
Ga0075038_1010351313300005650Permafrost SoilMTGDVRPSPEELVNPASSFRLLRNGLRGVEPTSLARPFPSHLGLSLERLSLSFVRFR
Ga0075037_125371523300006426Permafrost SoilMTGDVRPSPEELVNPASSFRLLRNGLRGVEPTSLARPFPSHLGLSLERLSLSFV
Ga0075522_1044020923300006638Arctic Peat SoilMSDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLE
Ga0126345_119339113300010858Boreal Forest SoilMTDSVRPLPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLEC
Ga0126352_105998613300010859Boreal Forest SoilMSDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGL
Ga0126347_139000813300010867Boreal Forest SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPIPSHLGLSLKCRQLSFVRHQ
Ga0184596_11556013300019176SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLEC
Ga0184583_10027113300019178SoilVRPPPEELVNPASGLRPLRDELRGVEPTSLPQPFPSHLGLSLER
Ga0184590_11216913300019184SoilMTDSVRTPPEELVNPASGFPPLRDGLRGVEPTSLTQPFPSHLGLSL
Ga0184587_11701413300019185SoilMTDSVRTPPEELVNPASGLPPSRDGLRGVEPTSVPQPFPSHLGLSLEC
Ga0184584_12464013300019187SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVR
Ga0181510_143689313300019240PeatlandMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLE
Ga0181508_105128713300019256PeatlandMTDSVRALPEELVNPASGLRILRCGLRGVEPTSLAQPFPSHLGLSLECFAIF
Ga0181504_107276113300019258PeatlandMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECR
Ga0181504_109074113300019258PeatlandMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVRPLHSS
Ga0213851_182202413300021860WatershedsMSDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLEC
Ga0242641_101407413300022499SoilMTDSVRPLPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSH
Ga0242643_10607713300022500SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVGPLHSS
Ga0242645_102519613300022501SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCV
Ga0242646_101154813300022502SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHL
Ga0242646_101848313300022502SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVGPLHS
Ga0242646_102656113300022502SoilMTDSVRPLPEELVNPASGLRSLQNGLRGVGPTSLTQPFPSHLGLSLECSQLS
Ga0242650_100750113300022503SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLS
Ga0242650_102126413300022503SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLE
Ga0242642_104074713300022504SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLP
Ga0242647_103198813300022505SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVGPLHSS
Ga0242651_101612513300022511SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPS
Ga0242659_107619823300022522SoilMTDSVRPLPEELVNPASGLPPFRDGLRGVEPTSLPQPFPSHLGLSLKC
Ga0242663_103582213300022523SoilMTDDVRPPPEELVNPASGLPPLRDGLRGVGATSLLQPFPSHLGLSLECRRLSCVHLLHS
Ga0242664_105790023300022527SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVG
Ga0242669_103467213300022528SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPNSLPQPFPSHLGLSLECRQLSCVRQLHS
Ga0242669_104417913300022528SoilMSDSVRPPPEELVNPASGLPPFRDGLRGVEPTSLSQPF
Ga0242669_107865213300022528SoilMTDDVRPPPEELVNPASGLPPLRDGLRGVGATSLLQPFPSHLGLSLECRRLSCVHLLHSS
Ga0242662_1010764113300022533SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVRQLHSS
Ga0222756_103535023300022709SoilMTDSVRTPPEKLVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQ
Ga0242674_101989913300022711SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECDQL
Ga0242671_103667913300022714SoilMTDSVRPLPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECR
Ga0242678_102712013300022715SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLG
Ga0242661_104679013300022717SoilMTDSVRTPPEKLVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVRQ
Ga0242661_105044213300022717SoilVRALPEELVNPASGLRFLRFGLRGVEPTSLTQPFPSHLGLSLERF
Ga0242661_116221313300022717SoilMSDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQHFPSHLGLSLECDQLSCVNHPH
Ga0242675_110739613300022718SoilMTDDVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLKCRRFSCVRQLHS
Ga0242672_103156413300022720SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRRLSCVGPLH
Ga0242672_112964713300022720SoilMTDSVRPLPEELVNPASGLPPFRDGLRGVEPTSLPQPFPSHL
Ga0210284_118459923300030529SoilMTDDVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGL
Ga0210284_118633013300030529SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGL
Ga0210274_117487813300030531SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVRPLHS
Ga0210290_100150013300030532SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVRP
Ga0210285_119659423300030535SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFP
Ga0210285_142936213300030535SoilMTDDVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVR
Ga0210281_154580713300030539SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVRPLH
Ga0210258_1077755413300030572SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVRPL
Ga0210260_1010259113300030577SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVRPLHP
Ga0210261_105760413300030582SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECLQLSFVHHLHPS
Ga0210283_116970223300030588SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQ
Ga0210278_106812213300030596SoilMTDSVRTPPEELVNPAFGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECR
Ga0210254_1024411723300030602SoilMTDDVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPF
Ga0210253_1114309113300030603SoilMTDSVRTPPEELVNTASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVGPLHSS
Ga0210291_1196770913300030626SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFP
Ga0210268_132196213300030629SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSCVRPLR
Ga0307482_112121213300030730Hardwood Forest SoilMTDRVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQP
Ga0307482_129553113300030730Hardwood Forest SoilMSDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCV
Ga0265460_1106315713300030740SoilMTDDVRTPPEELVNPASGLPPLRDGLRGVEPTSLSQPFPSHLGLSLECRQLSC
Ga0265775_10411413300030762SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVGPTSLTQPFPSHLGLSLECRQLSCVRQLHSS
Ga0265763_101565213300030763SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVRQLH
Ga0075396_103257913300030776SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLEC
Ga0075402_1251086633300030777SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSL
Ga0075398_1224647823300030778SoilMTDSVRTPPEELVNLASGLPPLRDGLRGVEPTSLPQPFPSHLGLSL
Ga0265750_103265513300030813SoilMSDSVRPPPEELVNPDSGLPPLRDGLRGVEPTSLPQPFPSHLG
Ga0265741_10719313300030814SoilMTDSVRPPPEELVNPASGLPPFRDGLRGVEPTSLPQPF
Ga0265729_10122713300030816SoilMTDSVRTLPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVGPL
Ga0265738_10320413300030834SoilMTDSVRPPPEELVNPASGLCPLRSKLRGVESTSLTQPFPSHLGLSLEDRQFSFVHRLSS
Ga0075377_1001858613300030844SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSL
Ga0075405_1000987313300030847SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPF
Ga0075393_1007431013300030849SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLE
Ga0075387_1001993813300030850SoilMSDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSL
Ga0075372_1007386513300030853SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLS
Ga0265753_103807613300030862SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVRQLHS
Ga0265753_107097423300030862SoilMTDSVRPPPEELVNHASGLPPMRDGLRGVEPTSLPQPFPSHLGLTM
Ga0265727_10366813300030875SoilMSDSVRPPPEELVNPASGLPPLRDGLRGVGPTSLTQPFPSHLGLSLE
Ga0265765_103919813300030879SoilMNDSVRPPPEELVNHASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLE
Ga0265743_10580613300030885SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECR
Ga0265769_12029013300030888SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVGPTSLTQPFPSHLGLSLECRQLSCVR
Ga0265769_12281913300030888SoilMTDSVRPPPEELVNPASGLRSLRSGLRGVEPTSLTHPFPSHLGLS
Ga0138296_160864013300030923SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLEC
Ga0075401_1007070113300030935SoilMTDSARTPPEELVNPASGFPPLRDGLRGVEPTSLTQPFPSHLGLSL
Ga0075383_1001085113300030966SoilMSDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRRLSCVRQLHPSSFNE
Ga0075381_1005467113300030970SoilMTDSVRTPPEELVNPASGFPPLRDGLRGVEPTSLTQPFPSHLGLSLECRQLSCVRQPHS
Ga0265774_10310513300031011SoilMTDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECLQ
Ga0265732_10149113300031016SoilMSDSVRPPPEELVNPASGLPPFRDGLRGVEPTSLPQPFPSHLGL
Ga0265773_101313113300031018SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQ
Ga0265754_101014323300031040SoilMSDSVRPPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVRQLH
Ga0265749_10135813300031042SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRRFSC
Ga0265779_10563113300031043SoilMTDSVRTPPEELVNPASGLPPLRDGLRGVEPTSLPQPFPSHLGLSLECRQLSCVRQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.