NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103256

Metagenome Family F103256

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103256
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 48 residues
Representative Sequence MEYKKGQLDEILFLVKKGFSYGDILTMPVYLRRYYVDYIIELENK
Number of Associated Samples 78
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 7.00 %
% of genes near scaffold ends (potentially truncated) 48.51 %
% of genes from short scaffolds (< 2000 bps) 70.30 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (57.426 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(11.881 % of family members)
Environment Ontology (ENVO) Unclassified
(43.564 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(66.337 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.
1Draft_04194512
2JGIcombinedJ13530_1070572852
3JGIcombinedJ13530_1076037482
4MIS_100110625
5RCM31_103764492
6MLSBCLC_104602362
7B570J29602_10065572
8B570J29032_1095121341
9B570J29032_1096863611
10B570J40625_1000007085
11B570J40625_1000309421
12B570J40625_1001349002
13B570J40625_1007094811
14JGI25914J50564_101382182
15Ga0007863_10081312
16Ga0066179_100527862
17Ga0007787_100024224
18Ga0069718_137031062
19Ga0068876_100000134
20Ga0078894_100236271
21Ga0078894_102248102
22Ga0078894_115138491
23Ga0075125_103595911
24Ga0081425_13104223
25Ga0070744_100065702
26Ga0070744_102099762
27Ga0102921_12215162
28Ga0102897_12231911
29Ga0114340_100058725
30Ga0114340_10411962
31Ga0114340_11131691
32Ga0114343_10718432
33Ga0114346_11773512
34Ga0114346_11783002
35Ga0114364_10174532
36Ga0114364_10840872
37Ga0102891_11650602
38Ga0102829_10459062
39Ga0114962_100133893
40Ga0114980_101517582
41Ga0114978_101066632
42Ga0116141_102395332
43Ga0114964_106126021
44Ga0133913_123702512
45Ga0133913_123702522
46Ga0153799_10590502
47Ga0172368_105180252
48Ga0172365_100213113
49Ga0172365_108551952
50Ga0172364_100429131
51Ga0177922_104394042
52Ga0177922_110610701
53Ga0172376_105356802
54Ga0181344_11208522
55Ga0194113_100032615
56Ga0211732_15380392
57Ga0211736_101760221
58Ga0211734_104268741
59Ga0211734_107061391
60Ga0211734_107064882
61Ga0211733_100235841
62Ga0211733_109447321
63Ga0211726_110380571
64Ga0211729_101878772
65Ga0194115_104179532
66Ga0194120_100479751
67Ga0194132_106051572
68Ga0208232_10086712
69Ga0208232_10245611
70Ga0214245_10633221
71Ga0222714_10000069107
72Ga0222713_103115772
73Ga0214919_100139984
74Ga0244775_102184501
75Ga0244776_100018184
76Ga0208257_10058302
77Ga0208554_10298142
78Ga0208440_10601442
79Ga0255118_10869842
80Ga0208974_10620492
81Ga0209084_100007969
82Ga0209500_104264741
83Ga0209353_101948432
84Ga0209777_101446862
85Ga0209777_105914582
86Ga0247722_100029575
87Ga0315291_108477372
88Ga0315293_101110223
89Ga0315293_103487802
90Ga0315288_107630582
91Ga0315288_107754342
92Ga0315908_105752081
93Ga0315909_101088721
94Ga0315289_114502512
95Ga0315284_107395122
96Ga0315283_111339472
97Ga0316625_1000183342
98Ga0334985_0443858_622_762
99Ga0334987_0009420_1166_1309
100Ga0335020_0219546_824_946
101Ga0335020_0626741_366_500
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.21%    β-sheet: 0.00%    Coil/Unstructured: 54.79%
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Variant

51015202530354045MEYKKGQLDEILFLVKKGFSYGDILTMPVYLRRYYVDYIIELENKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
64.4%35.6%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Sediment
Freshwater
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater Lake Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater Lake
Freshwater
Sediment
Marine Plankton
Sinkhole Freshwater
Freshwater
Freshwater
Estuarine
Wetland
Estuarine
Estuarine Water
Hotspring
Saline Lake
Soil
Deep Subsurface Sediment
Anaerobic Digestor Sludge
Hydrocarbon Resource Environments
Hydrocarbon Resource Environments
6.9%4.0%8.9%6.9%7.9%4.0%7.9%11.9%10.9%6.9%3.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Draft_041945123300000032Hydrocarbon Resource EnvironmentsLKLVSGSNFFALSTDYNKGQLDEILYLIKKGFSYKDILTMPVYLRRYFVGYLLELEKQN*
JGIcombinedJ13530_10705728523300001213WetlandMEYREGQLKEILFLIREGFSYNDVLSMPVYIRKYYIDYIIEMKNK*
JGIcombinedJ13530_10760374823300001213WetlandMDYKRTQLKELLFLVKRGFSYSDVISMPVYIRRYYIQYIAEAEKE*
MIS_1001106253300001765Sinkhole FreshwaterMDYKKGQLDEILFMVKRGFSYSDVLMMPIHTRRYYVQYMIELENK*
RCM31_1037644923300001851Marine PlanktonNFFALSTEYKKAQLDEILFMVKNGFSYGDILNMPVYLRRYYINFILEAQKT*
MLSBCLC_1046023623300002220Hydrocarbon Resource EnvironmentsMDYKKGQLDEILYLIKRGFSYSETLTMPVYLRRYFVQYLIELENSK*
B570J29602_100655723300002371FreshwaterMEYRKTQLDEFLYLIKKGXNYSELLTMPIYLRRYYVNYIIEIENKQ*
B570J29032_10951213413300002408FreshwaterELGLGLTFFALSTEYKKNQLSEIHYLIRKGFSYGDILTMPVYIRRYYIGYIMELENTQ*
B570J29032_10968636113300002408FreshwaterFFVLSTDYKKGQLDEFLFLIKRGFTYGDILTMPVWERRYYVNYLVELENKK*
B570J40625_10000070853300002835FreshwaterMEYRKTQLDEFLYLIKKGFNYSELLTMPIYLRRYYVNYIIEIENKQ*
B570J40625_10003094213300002835FreshwaterPRQETQSKLKLDSGLSFFVLSTDYKKGQLDEFLFLIKRGFTYGDILTMPVWERRYYVNYLVELENKK*
B570J40625_10013490023300002835FreshwaterMDYKKGQLDEILFLIKKGFSYGDLLTMPVHLRRYYVNYIIELENNTQ*
B570J40625_10070948113300002835FreshwaterDYKKGQLDEILYLVKRGFSYGDILSMPIYIRRYYINYMMELENNTQ*
JGI25914J50564_1013821823300003429Freshwater LakeFFVLSTDYKKGQLDEFLFLIKRGFTYGDILTMPVWERRYYVNYLIELENKK*
Ga0007863_100813123300003820FreshwaterMDYKKIQLDEILFLVKKGFSYGDILTMPVYLRRYYVEYIIELENKQS*
Ga0066179_1005278623300004126Freshwater LakeDYKKGQLDEFLFLIKRGFTYGDILTMPVWERRYYVNYLIELENKK*
Ga0007787_1000242243300004240Freshwater LakeMLKSASGWSFFVLSMDYKKGQLDEILFLIKKGFSYGDILTMPIFIRRYYVEYILELENSPK*
Ga0069718_1370310623300004481SedimentMSQLKEILFLVKRGFSYSDLLSMPVYIRRYYIQYIQELENQPKN*
Ga0068876_1000001343300005527Freshwater LakeMAYKKGQLDEILFLIKRGFSYGDIITMPVFIRRYYVEYIIELENTPK*
Ga0078894_1002362713300005662Freshwater LakeASGWSFFVLSMDYKKGQLDEILFLIKKGFSYGDILTMPIFIRRYYVEYILELENSPK*
Ga0078894_1022481023300005662Freshwater LakeFFVLSTDYKKGQLDEILFLVKKGFSYGDILTMPVYLRKYYVGYIIELENAK*
Ga0078894_1151384913300005662Freshwater LakeASGWSFFVLSMDYKKGQLDEILFLIKKGFSYGDILTMPIFVRRYYVEYILELENSPK*
Ga0075125_1035959113300005935Saline LakeGWNFFALSTEYRKGQLDEILFLVKRGFSYSDIISMPIYIRRYYVEYIHELETAN*
Ga0081425_131042233300006065HotspringMEYKKGQLDEILFLIKRGFSYGDIMSMPVYERRYFVQYIIELENSK*
Ga0070744_1000657023300006484EstuarineMEYKKGQLDEILFLVKKGFSYGDILTMPVYLRRYYVDYIIELENKTT*
Ga0070744_1020997623300006484EstuarineMEYRKTQLDEFLFLIKKGFNYSELLTMPIYLRRYYVNYIIEIENKQ*
Ga0102921_122151623300007603EstuarineMEYKKGQLDEILFLIKKGFSYGDLLTMPVHLRRYYVNYIIELENNTQ*
Ga0102897_122319113300007617EstuarineKGQLDEFLFLIKRGFTYGDILTMPIWERRYYVNYLIELENKQ*
Ga0114340_1000587253300008107Freshwater, PlanktonMDYKKGQLDEILFLIKKGFTYGDILTMPVFIRRYYVGYILEMENTPK*
Ga0114340_104119623300008107Freshwater, PlanktonGWSFFVLSMDYKKGQLDEILFLIKKGFSYGDILTMPIFIRRYYVEYILELENSPK*
Ga0114340_111316913300008107Freshwater, PlanktonSKGQLDEILYLVKRGFSYRDILLMPIYIRRYYINYMIEVENTPK*
Ga0114343_107184323300008110Freshwater, PlanktonMDYKKGQLDEILFLIKKGFSYGDILTMPIFIRRYYVEYILELENSPK*
Ga0114346_117735123300008113Freshwater, PlanktonQLDEILFLIKKGFSYGDILTMPIFIRRYYVEYILELENSPK*
Ga0114346_117830023300008113Freshwater, PlanktonMDYKKGQLDEILFLIKKGFSYGDILTMPIFIRRYYVEYILELE
Ga0114364_101745323300008267Freshwater, PlanktonMAYKKGQLDEILFLIKRGFSYGDIITMPVFIRRYYVEYIIELENAPK*
Ga0114364_108408723300008267Freshwater, PlanktonMEYKKGQLDEILFLIKKGFSYGDVLTMPIFIRRYYVEYIIELENTPK*
Ga0102891_116506023300008950EstuarineMEYKKGQLDEILFLVKKGFSYGDILTMPVYLRRYYVDYIIELENK
Ga0102829_104590623300009026EstuarineNQLTEILFLVKRGFSYGDIMSMPVYVRKYFISFMMELENSN*
Ga0114962_1001338933300009151Freshwater LakeMDYKKGQLDEILFLVKRGFSYGDILSMPVYIRRYYINYMIEKETENN*
Ga0114980_1015175823300009152Freshwater LakeMEYKKGQLDEILFLVKKGFSYGDILTMPIYLRRYYVDYIIELENTKT*
Ga0114978_1010666323300009159Freshwater LakeFFVLSTDYKKGQLDEFLFLIKRGFTYGDILTMPVWERRYYVNYLIELENKQ*
Ga0116141_1023953323300009693Anaerobic Digestor SludgeKLDLGSNFFALSTDYRTGQLKEILFLIKRGFTYSDVLSMPIHVRRFYIQYISEIETQK*
Ga0114964_1061260213300010157Freshwater LakeMEYKKGQLDEILFLVKKGFSYGDILTMPVYLRRYY
Ga0133913_1237025123300010885Freshwater LakeLGLTFFALSTDYKKNQLDEILYLITKGFTYGDVLTMPIFVRRYYINFLIEKQTENS*
Ga0133913_1237025223300010885Freshwater LakeLGLTFFALSTDYKKNQLDEILYLITKGFTYGDVLTMPIFVRRYYINFLIEKQTENG*
Ga0153799_105905023300012012FreshwaterMDYKKGQLDEILFLIKKGFSYGDIITMPVFIRRYYVEYIIELENAPK*
(restricted) Ga0172368_1051802523300013123FreshwaterMEYKKYQLDEILFLVKRGFSYSDIISMPVHTRKYYVSYIIELENG*
(restricted) Ga0172365_1002131133300013127SedimentMGQLKEILFLVKRGFSYSDILSMPIYVRRYYIQYITELETEK*
(restricted) Ga0172365_1085519523300013127SedimentMEYKKGQLDEILFLVKRGFSYSDILAMPIYIRRYFVEYMIELQNEK*
(restricted) Ga0172364_1004291313300013129SedimentMGQLKEILFLVKRGFSYSDILSMPIYVRRYYIQYITELESEK*
Ga0177922_1043940423300013372FreshwaterMEYKKGQLDEILFLIKKGFSYGDIITMPVFIRRYYVEYIIELENAPK*
Ga0177922_1106107013300013372FreshwaterMEYRKTQLDEFLFLIKKGFNYSELLTMPIYLRRYY
(restricted) Ga0172376_1053568023300014720FreshwaterMEYKKGQLDEILFLIKKGFSYGDVLTMPIFIRRYYVEYILELENSPK*
Ga0181344_112085223300017754Freshwater LakeMSMLKSASGWSFFVLSMDYKKGQLDEILFLIKKGFSYGDILTMPIFIRRYYVEYILELENSPK
Ga0194113_1000326153300020074Freshwater LakeMAYKKGQLDEILFLIKRGFSYGDIITMPVFIRRYYVEYIIELENAPK
Ga0211732_153803923300020141FreshwaterMEYKKGQLDEILFLVKKGFSYGDILTMPVYLRRYYVDYIIELENKTT
Ga0211736_1017602213300020151FreshwaterLQLGLGLTFFALSTEYKKNQLSEIHYLVKKGFSYGDILTMPVYIRRYYIGYIMEMENPN
Ga0211734_1042687413300020159FreshwaterQLDEILYLVKRGFSYRDILLMPIYIRRYYINYLIEIENTPR
Ga0211734_1070613913300020159FreshwaterDSGLSFFVLSTDYKKGQLDEILFLVKRGFSYGDILSMPVYIRRYYIQYLISLESGNN
Ga0211734_1070648823300020159FreshwaterDSGLSFFVLSTDYKKGQLDEILFLVKRGFSYGDILSMPVYIRRYYIQYLISLENGNN
Ga0211733_1002358413300020160FreshwaterNQLTEILFLVKRGFSYGDIMSMPVYVRKYFISFMMELENSN
Ga0211733_1094473213300020160FreshwaterSFFDLSTEYKRGQLNEILYLVKKGFSYGDIVSMPIYIRRYYVEFLLELENSN
Ga0211726_1103805713300020161FreshwaterNQLSEIHYLVKKGFSYGDILTMPVYIRRYYIGYIMEMENPN
Ga0211729_1018787723300020172FreshwaterKKGQLDEILFLVKRGFSYGDILSMPVYIRRYYIQYLISLEGGND
Ga0194115_1041795323300020183Freshwater LakeMEYKKGQLDEILFLIKKGFSYGDVLTMPIFIRRYYVEYILELENSPK
Ga0194120_1004797513300020198Freshwater LakeQLDEILFLIKRGFSYGDIITMPVFIRRYYVEYIIELENAPK
Ga0194132_1060515723300020214Freshwater LakeLSTDYKKGQLDEILFLVKRGFSYGDILNMPVYLRRYYVSYLIELENSPK
Ga0208232_100867123300020527FreshwaterMEYRKTQLDEFLYLIKKGFNYSELLTMPIYLRRYYVNYIIEIENKQ
Ga0208232_102456113300020527FreshwaterSNLELGLGLTFFALSTEYKKNQLSEIHYLIRKGFSYGDILTMPVYIRRYYIGYIMELENT
Ga0214245_106332213300020722FreshwaterMDYKKGQLDEILFLVKRGFSYSDIISMPVHIRRYFVEYLIE
Ga0222714_100000691073300021961Estuarine WaterMLKSASGWSFFVLSMDYKKGQLDEILFLIKKGFSYGDILTMPIFIRRYYVEYILELENSP
Ga0222713_1031157723300021962Estuarine WaterSTDYSKGQLDEILFLVKRGFSYRDILLMPVYIRRYYISYLIELENNNK
Ga0214919_1001399843300023184FreshwaterMKSNLILGSGLTFFALSTEYKKNQLSEILFLVKRGFSYGDIISMPIYIRRYYIEYIMELENS
Ga0244775_1021845013300024346EstuarineMEYKKGQLDEILFLIKKGFSYGDLLTMPVHLRRYYVNYIIELENNTQ
Ga0244776_1000181843300024348EstuarineMDYKKGQLDEILFLIKKGFSYGDLLTMPVHLRRYYVNYIIELENNTQ
Ga0208257_100583023300025389FreshwaterMDYKKIQLDEILFLVKKGFSYGDILTMPVYLRRYYVEYIIELENKQS
Ga0208554_102981423300027212EstuarineLGLGLTFFALSTEYKKNQLSEIHYLVKKGFSYGDILTMPVYIRRYYIGYIMEMENPN
Ga0208440_106014423300027281EstuarineMEYRKTQLDEFLFLIKKGFNYSELLTMPIYLRRYYVNYIIEIENKQ
Ga0255118_108698423300027593FreshwaterLSTEYRKGMLDEILYLVRRGFSYNDILTMPVYVRRYYINYIMEIESPN
Ga0208974_106204923300027608Freshwater LenticNFFALSTEYRKTQLDEILFLIKRGFSYGDILSMPISIRRYYVNYIMELENSKN
Ga0209084_1000079693300027749Freshwater LakeMDYKKGQLDEILFLVKRGFSYGDILSMPVYIRRYYINYMIEKETENN
Ga0209500_1042647413300027782Freshwater LakeLSTDYKKGQLDEFLFLIKRGFTYGDILTMPVWERRYYVNYLIELENKQ
Ga0209353_1019484323300027798Freshwater LakeILFLVKRGFSYSDIISMPVYIRRYYVQYMLELEGGNN
Ga0209777_1014468623300027896Freshwater Lake SedimentMDYKKGQLNEILYLVKRGFSYSDIISMPVYIRRYFIQYISELENEK
Ga0209777_1059145823300027896Freshwater Lake SedimentMDYKKGQLDEILFLVKRGFSYSDIISMPVHIRRYFVEYLIEIENRK
Ga0247722_1000295753300028027Deep Subsurface SedimentKLKLGSGLSFFVLSTDYKKGQLDEFLFLIKRGFTYGDILTMPVWERRYYVNYLIELENKK
Ga0315291_1084773723300031707SedimentMEYRKGQLDEILYLIKRGFTYSDIISMPVFIRRYYVQYINELENVK
Ga0315293_1011102233300031746SedimentDLGRNFFALSMDYKKNQLDEILFLVNRHFSYSDIISMPVYLRRYFRDYILELENKE
Ga0315293_1034878023300031746SedimentMDYKKGQLDEILFLIKRGFAYRDILLMPISIRRYYVNYIYGLENTPA
Ga0315288_1076305823300031772SedimentMEYRKGQLKEILFLVKRGFSYLDIISMPVYIRRYYVQYIQELENEK
Ga0315288_1077543423300031772SedimentMDYKKNQLDEILFLVNRHFSYSDIISMPVYLRRYFRDYILELENKE
Ga0315908_1057520813300031786FreshwaterMAYKKGQLDEILFLIKRGFSYGDIITMPVFIRRYYVEYIIELEN
Ga0315909_1010887213300031857FreshwaterGQLDEILYLVKRGFSYRDILLMPIYIRRYYINYLIEIENTPK
Ga0315289_1145025123300032046SedimentRESQLKEIFMLVKRGFSYGDILVMPIFVRRYYFNYIIEQENKK
Ga0315284_1073951223300032053SedimentMEYREGQLKEILFLIREGFSYNDVLSMPVYIRKYYIDYIIEMKNK
Ga0315283_1113394723300032164SedimentMEYRKGQLDEILYLIKRGFSYSDIISMPVHIRRYFIQYLTELENSK
Ga0316625_10001833423300033418SoilMDYRMGQLKEILFLVKRGFSYSDILTMPVYIRRYYIQYIVELENQK
Ga0334985_0443858_622_7623300034018FreshwaterTEYKKNQLSEIHYLIRKGFSYGDILTMPVYIRRYYIGYIMELENTQ
Ga0334987_0009420_1166_13093300034061FreshwaterMEYKKGQLDEILFLVKKGFSYGDIITMPVFIRRYYVEYIIELENAPK
Ga0335020_0219546_824_9463300034082FreshwaterMDYKKGQLDEILFLIKKGFSYGDLLTMPVHLRRYYVNYIIE
Ga0335020_0626741_366_5003300034082FreshwaterMEYRKTQLDEFLYLIKKGFNYSELLTMPIYLRRYYVNYIIEIENK


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