Metagenome Family F103245

Basic Information
Family ID	F103245
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	64 residues
Representative Sequence	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSTTN
Number of Associated Samples	77
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.97 %
% of genes near scaffold ends (potentially truncated)	21.78 %
% of genes from short scaffolds (< 2000 bps)	72.28 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (77.228 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (29.703 % of family members)
Environment Ontology (ENVO)	Unclassified (60.396 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (39.604 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88. 1JGI12421J11937_101252562 2B570J40625_1015170512 3JGI25913J50563_10012162 4Ga0070744_100531783 5Ga0070744_101608741 6Ga0075464_103543431 7Ga0070748_13164281 8Ga0070747_12674191 9Ga0099846_11124583 10Ga0102874_12445492 11Ga0102875_11452032 12Ga0102880_10485592 13Ga0102828_11119532 14Ga0102915_12611621 15Ga0102856_10127133 16Ga0102876_10723821 17Ga0102868_10816701 18Ga0102859_10137925 19Ga0102854_10692922 20Ga0114980_1001230913 21Ga0114980_104625202 22Ga0114980_107513301 23Ga0114968_102841913 24Ga0114977_100313437 25Ga0114977_102044612 26Ga0114966_100646416 27Ga0105102_105850022 28Ga0105097_106069542 29Ga0114979_101532762 30Ga0114969_103401861 31Ga0114974_100326814 32Ga0114974_100688244 33Ga0114974_101578915 34Ga0114974_102436571 35Ga0114974_105850141 36Ga0114983_100490411 37Ga0153698_179022 38Ga0153703_156116 39Ga0136712_10213772 40Ga0157210_10247872 41Ga0164293_102592262 42Ga0181344_10319521 43Ga0211736_107701051 44Ga0211731_117391073 45Ga0207938_10075251 46Ga0208597_10391082 47Ga0208718_10260333 48Ga0222714_100658745 49Ga0212119_10634002 50Ga0244777_100163969 51Ga0244775_101309314 52Ga0244776_100024572 53Ga0208133_11010161 54Ga0209392_11358441 55Ga0209704_12156421 56Ga0209599_100841662 57Ga0209599_101390492 58Ga0209297_10013108 59Ga0209596_12352712 60Ga0209296_10060902 61Ga0209296_10189479 62Ga0209296_10261438 63Ga0209296_10838872 64Ga0209088_101265993 65Ga0209134_1000005541 66Ga0209246_103018371 67Ga0209107_100243629 68Ga0209253_103850792 69Ga0209298_103558821 70Ga0247722_100210176 71Ga0315274_121008382 72Ga0334722_105262702 73Ga0334989_0043347_2087_2278 74Ga0334989_0455066_2_184 75Ga0334989_0473801_18_209 76Ga0335003_0002859_3667_3858 77Ga0334979_0126908_357_548 78Ga0334979_0243417_3_179 79Ga0335005_0046682_14_205 80Ga0335005_0049223_2402_2593 81Ga0335005_0135026_731_922 82Ga0335005_0176217_1076_1267 83Ga0335005_0221820_896_1087 84Ga0335023_0007644_5160_5351 85Ga0335023_0077730_809_1000 86Ga0335023_0089166_681_872 87Ga0335024_0415908_92_283 88Ga0334995_0139173_345_536 89Ga0334990_0090869_485_676 90Ga0334990_0617290_197_388 91Ga0335020_0408972_55_246 92Ga0335012_0191217_177_368 93Ga0335012_0490090_371_583 94Ga0335035_0144682_1009_1200 95Ga0335036_0194623_1247_1408 96Ga0335037_0194738_1_180 97Ga0335037_0299707_687_875 98Ga0335055_0378884_433_588 99Ga0335061_0069538_1684_1875 100Ga0335065_0322786_448_639 101Ga0335013_0080422_1859_2080
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88. 1JGI12421J11937_101252562 2Ga0070748_13164281 3Ga0070747_12674191 4Ga0114977_102044612
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88. 1JGI12421J11937_101252562 2Ga0070748_13164281 3Ga0070747_12674191 4Ga0114977_102044612
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.38% β-sheet: 0.00% Coil/Unstructured: 47.62%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF04404	ERF	12.87
PF11753	DUF3310	10.89
PF00149	Metallophos	2.97
PF00959	Phage_lysozyme	1.98
PF06199	Phage_tail_2	1.98
PF05766	NinG	0.99
PF12298	Bot1p	0.99

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	22.77 %
Unclassified	root	N/A	77.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	4.95 %
Unclassified	root	N/A	77.23 %
Viruses	superkingdom	All Organisms → Viruses	17.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.95 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	11.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Unclassified	root	N/A	77.23 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.99 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	11.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %
Unclassified	root	N/A	77.23 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Unclassified	root	N/A	77.23 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	11.88 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.99 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Unclassified	root	N/A	77.23 %

Name	Rank	Taxonomy	Distribution
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	0.99 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	11.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.99 %
Unclassified	root	N/A	77.23 %

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.99 %
Unclassified	root	N/A	77.23 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11.88 %

Name	Rank	Taxonomy	Distribution
Dysgonomonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae	0.99 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Unclassified	root	N/A	77.23 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11.88 %

Name	Rank	Taxonomy	Distribution
Dysgonomonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Unclassified	root	N/A	77.23 %
unclassified Ensifer	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer	0.99 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11.88 %

Name	Rank	Taxonomy	Distribution
Ensifer sp. Root142	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. Root142	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Unclassified	root	N/A	77.23 %
unclassified Dysgonomonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas	0.99 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11.88 %

Name	Rank	Taxonomy	Distribution
Dysgonomonas sp. 521	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas → Dysgonomonas sp. 521	0.99 %
Ensifer sp. Root142	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. Root142	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Unclassified	root	N/A	77.23 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11.88 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000756\|JGI12421J11937_10125256	Not Available	665	Open in IMG/M
3300002835\|B570J40625_101517051	Not Available	549	Open in IMG/M
3300003431\|JGI25913J50563_1001216	Not Available	5188	Open in IMG/M
3300006484\|Ga0070744_10053178	Not Available	1185	Open in IMG/M
3300006484\|Ga0070744_10160874	Not Available	643	Open in IMG/M
3300006805\|Ga0075464_10354343	Not Available	888	Open in IMG/M
3300006920\|Ga0070748_1316428	Not Available	553	Open in IMG/M
3300007276\|Ga0070747_1267419	Not Available	592	Open in IMG/M
3300007542\|Ga0099846_1112458	Not Available	997	Open in IMG/M
3300007546\|Ga0102874_1244549	Not Available	544	Open in IMG/M

Showing 1 to 10 of 101 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.04%
Terrestrial	Environmental → Terrestrial	3.96%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	3.96%
Freshwater	Environmental → Aquatic → Freshwater	75.25%
Marine	Environmental → Aquatic → Marine	20.79%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	3.96%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.88%
Lake	Environmental → Aquatic → Freshwater → Lake	55.45%
Lentic	Environmental → Aquatic → Freshwater → Lentic	10.89%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.96%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.95%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.96%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	11.88%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.98%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	53.47%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.96%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.97%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.99%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	11.88%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	3.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.99%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	29.70%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.96%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.97%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.98%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.98%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	1.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	21.78%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	3.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.99%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.98%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007546	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02	Environmental	Open in IMG/M
3300007547	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02	Environmental	Open in IMG/M

Showing 1 to 10 of 77 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_101252562	3300000756	Freshwater And Sediment	MFNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPERTSTTN*
B570J40625_1015170512	3300002835	Freshwater	VQHPITAYKTMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTS
JGI25913J50563_10012162	3300003431	Freshwater Lake	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSSSN*
Ga0070744_100531783	3300006484	Estuarine	MLNFQQEPSFEQGLKDAINKLINQLPGVQKDPYQSRQLHARIQVFKRALQLLDDLPKTTSTTN*
Ga0070744_101608741	3300006484	Estuarine	TMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALELLNDLPERTSSSN*
Ga0075464_103543431	3300006805	Aqueous	QEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0070748_13164281	3300006920	Aqueous	TKRGAASYTAYKTMLNFNQEPSFEQGLKDAINKLTNQLAGVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0070747_12674191	3300007276	Aqueous	MFNYPKEQSFEQGLKDAISKLTNQLQDVQKDPYKFRQVHTRIQVFKRALQLLNDIPERTS
Ga0099846_11124583	3300007542	Aqueous	MFNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN*
Ga0102874_12445492	3300007546	Estuarine	MINYPQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPERTSTTN*
Ga0102875_11452032	3300007547	Estuarine	MGKQYLKLNQIDKTKRGAASYTAYKTMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN*
Ga0102880_10485592	3300007550	Estuarine	MINYPQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN*
Ga0102828_11119532	3300007559	Estuarine	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0102915_12611621	3300007562	Estuarine	MINYTQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDD
Ga0102856_10127133	3300007636	Estuarine	MGKQYLKLNQIDKTKRGAASYTAYKTMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPERTSTTN*
Ga0102876_10723821	3300007642	Estuarine	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPERTSTTN*
Ga0102868_10816701	3300007653	Estuarine	KQYLKLNQIDKTKRGAASYTAYKTMLNFQQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVHARIQVFKRALQLLDDLPERTSTTN*
Ga0102859_10137925	3300007708	Estuarine	MINYPQEPSFEQGLKDAINKLTSELARVQKNPYEFRQVHTRIQVFKRALQLLDDLPERTSTTN*
Ga0102854_10692922	3300009058	Estuarine	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN*
Ga0114980_1001230913	3300009152	Freshwater Lake	MNFIYKTMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALELLNDLPKTTSTTN*
Ga0114980_104625202	3300009152	Freshwater Lake	MINYPQEQSFEQGLKDAINKLTNQLAGVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0114980_107513301	3300009152	Freshwater Lake	MLNYPQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALELLNDLPERTSSSN*
Ga0114968_102841913	3300009155	Freshwater Lake	MFNYPQEQSFEQGLKDAINKLTNQLPGVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSSSN*
Ga0114977_100313437	3300009158	Freshwater Lake	MINYPQEQSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSSSN*
Ga0114977_102044612	3300009158	Freshwater Lake	MNFINKTMLNFNQEPSFEQGLKDAINKLTSELARVQKNPYEFRQVHTRIQVFKRALQLLDDLPKTTSTTN*
Ga0114966_100646416	3300009161	Freshwater Lake	EQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLNDLPERTSSSN*
Ga0105102_105850022	3300009165	Freshwater Sediment	MLNFQQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0105097_106069542	3300009169	Freshwater Sediment	MFNYQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0114979_101532762	3300009180	Freshwater Lake	MINYPQEQSFEQGLKDAINKLTNQLPSVQKDPFQSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0114969_103401861	3300009181	Freshwater Lake	MFNYQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLNDLPERTSSSN*
Ga0114974_100326814	3300009183	Freshwater Lake	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALELLNDLPERTSSSN*
Ga0114974_100688244	3300009183	Freshwater Lake	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDAYKSRQVHARIQVFKRALELLNDLPERTSSSN*
Ga0114974_101578915	3300009183	Freshwater Lake	PSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0114974_102436571	3300009183	Freshwater Lake	MLNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSSSN*
Ga0114974_105850141	3300009183	Freshwater Lake	MINYSQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0114983_100490411	3300009194	Deep Subsurface	MINYPQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0153698_179022	3300011335	Freshwater	PQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALQLLDDLPERTSTTN*
Ga0153703_156116	3300011336	Freshwater	MFNYPQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALQLLDDLPERTSTTN*
Ga0136712_10213772	3300012266	Freshwater	MITYTQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0157210_10247872	3300012665	Freshwater	MINYQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSSSN*
Ga0164293_102592262	3300013004	Freshwater	VQHPTTAYKTMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN*
Ga0181344_10319521	3300017754	Freshwater Lake	MLNFQQEQSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPERTSTTN
Ga0211736_107701051	3300020151	Freshwater	MINYPQEQSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPERTSTTN
Ga0211731_117391073	3300020205	Freshwater	MFNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALELLNDL
Ga0207938_10075251	3300020525	Freshwater	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0208597_10391082	3300020562	Freshwater	MFNFNQEQSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALELLNDLPERTSSSN
Ga0208718_10260333	3300020565	Freshwater	MLNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0222714_100658745	3300021961	Estuarine Water	MINYPQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALQLLDDLPERTSTTN
Ga0212119_10634002	3300022543	Freshwater	MITYTQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0244777_100163969	3300024343	Estuarine	MINYPQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPERTSTTN
Ga0244775_101309314	3300024346	Estuarine	MLNFQQEPSFEQGLKDAINKLINQLPGVQKDPYQSRQLHARIQVFKRALQLLDDLPKTTSTTN
Ga0244776_100024572	3300024348	Estuarine	MGKQYLKLNQIDKTKRGAASYTAYKTMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0208133_11010161	3300027631	Estuarine	FEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALELLNDLPERTSSSN
Ga0209392_11358441	3300027683	Freshwater Sediment	QTKIMFNYPKEQSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0209704_12156421	3300027693	Freshwater Sediment	LKTKRGAASYTAYKTMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0209599_100841662	3300027710	Deep Subsurface	MFNYPKEQSFEQGLRDAINKLTNQLSDVQKDPYLTRQVHTRIQVFKRALQLLNDIPQRTS
Ga0209599_101390492	3300027710	Deep Subsurface	MINYSQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPK
Ga0209297_10013108	3300027733	Freshwater Lake	MINYPQEQSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSSSN
Ga0209596_12352712	3300027754	Freshwater Lake	MFNYQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLNDLPERTSSSN
Ga0209296_10060902	3300027759	Freshwater Lake	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0209296_10189479	3300027759	Freshwater Lake	MINYSQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0209296_10261438	3300027759	Freshwater Lake	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDAYKSRQVHARIQVFKRALELLNDLPERTSSSN
Ga0209296_10838872	3300027759	Freshwater Lake	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALELLDDLPKTTSTTN
Ga0209088_101265993	3300027763	Freshwater Lake	MINYPQEQSFEQGLKDAINKLTNQLPSVQKDPFQSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0209134_1000005541	3300027764	Freshwater Lake	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSSSN
Ga0209246_103018371	3300027785	Freshwater Lake	MFNYQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0209107_100243629	3300027797	Freshwater And Sediment	MFNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPERTSTTN
Ga0209253_103850792	3300027900	Freshwater Lake Sediment	MLNFNQEPSFEQGLKDAINKLTNQLAGVQKDAYKSRQVHARIQVFKRALQLLDDLPERTSTTN
Ga0209298_103558821	3300027973	Freshwater Lake	MLNYPQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALELLNDLPERTSSSN
Ga0247722_100210176	3300028027	Deep Subsurface Sediment	MLNFQQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0315274_121008382	3300031999	Sediment	MLNFNQEPSFEQGLKDAINKLTNQLPGVQKDPYQSRQVHARIQVFKRALQLLDDLPKRTSTTN
Ga0334722_105262702	3300033233	Sediment	MINYPQEQSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0334989_0043347_2087_2278	3300033984	Freshwater	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSSSN
Ga0334989_0455066_2_184	3300033984	Freshwater	FQQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0334989_0473801_18_209	3300033984	Freshwater	MFNYQQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0335003_0002859_3667_3858	3300033995	Freshwater	MFNYPQEPSFEQGLKDAINKLTNQLPSVQKNPYESRQVHTRIQVFKRALQLLNDLPERTSETN
Ga0334979_0126908_357_548	3300033996	Freshwater	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0334979_0243417_3_179	3300033996	Freshwater	QEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALELLNDLPERTSSSN
Ga0335005_0046682_14_205	3300034022	Freshwater	MINYSQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALELLDDLPKTTSTTN
Ga0335005_0049223_2402_2593	3300034022	Freshwater	MINYSQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALQLLDDLPKRTSTTN
Ga0335005_0135026_731_922	3300034022	Freshwater	MFNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0335005_0176217_1076_1267	3300034022	Freshwater	MFNYQQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVYARIQVFKRALQLLDDLPKTTSSSN
Ga0335005_0221820_896_1087	3300034022	Freshwater	MFNYQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLLDDLPKTTSSSN
Ga0335023_0007644_5160_5351	3300034050	Freshwater	MINYPQEQSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0335023_0077730_809_1000	3300034050	Freshwater	MLNFQQEPSFEQGLKDAINKLTNQLPGVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSSSN
Ga0335023_0089166_681_872	3300034050	Freshwater	MLNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTSSSN
Ga0335024_0415908_92_283	3300034051	Freshwater	MLNFNQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0334995_0139173_345_536	3300034062	Freshwater	MLNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVFARIQVFKRALQLLDDLPKTTSTTN
Ga0334990_0090869_485_676	3300034068	Freshwater	MLNYPQEQSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0334990_0617290_197_388	3300034068	Freshwater	MFNYPQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVYARIQVFKRALQLLDDLPKRTSTTN
Ga0335020_0408972_55_246	3300034082	Freshwater	MLNFNQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN
Ga0335012_0191217_177_368	3300034093	Freshwater	MINYSQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0335012_0490090_371_583	3300034093	Freshwater	KFKQKLTMFNYPQEPSFEQGLKDAINKLTNQLPSVQKNPYESRQVHTRIQVFKRALQLLNDLPERTSETN
Ga0335035_0144682_1009_1200	3300034105	Freshwater	MFNYPQEQSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0335036_0194623_1247_1408	3300034106	Freshwater	MFNYPQEPSFEQGLKDAINKLTNQLPSVQKNPYESRQVHTRIQVFKRALQLLND
Ga0335037_0194738_1_180	3300034107	Freshwater	MLNYSQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALQLLDDLPKTTS
Ga0335037_0299707_687_875	3300034107	Freshwater	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0335055_0378884_433_588	3300034110	Freshwater	MLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYQSRQVHARIQVFKRALQLL
Ga0335061_0069538_1684_1875	3300034168	Freshwater	MFNFQQEQSFEQGLKDAINKLTNQLPSVQKDPYQSRQVYARIQVFKRALELLNDLPERTSSSN
Ga0335065_0322786_448_639	3300034200	Freshwater	MFNYQQEPSFEQGLKDAINKLTNQLPGVQKDPYKSRQVYARIQVFKRALQLLDDLPKTTSTTN
Ga0335013_0080422_1859_2080	3300034284	Freshwater	VQHPTTAYKTMLNFQQEPSFEQGLKDAINKLTNQLPSVQKDPYKSRQVHARIQVFKRALQLLDDLPKTTSTTN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103245

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences