Metagenome Family F103112

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103112
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	97 residues
Representative Sequence	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSTARRGAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG
Number of Associated Samples	68
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.23 %
% of genes near scaffold ends (potentially truncated)	35.64 %
% of genes from short scaffolds (< 2000 bps)	68.32 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.149 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (24.752 % of family members)
Environment Ontology (ENVO)	Unclassified (72.277 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (79.208 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.08% β-sheet: 0.00% Coil/Unstructured: 46.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00583	Acetyltransf_1	25.74
PF12840	HTH_20	21.78
PF08264	Anticodon_1	7.92
PF03594	BenE	1.98
PF00486	Trans_reg_C	0.99
PF01432	Peptidase_M3	0.99
PF10431	ClpB_D2-small	0.99
PF01757	Acyl_transf_3	0.99
PF08002	DUF1697	0.99
PF09269	DUF1967	0.99
PF00265	TK	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	1.98
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	1.98
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	1.98
COG3135	Predicted benzoate:H+ symporter BenE	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.98
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	0.99
COG1435	Thymidine kinase	Nucleotide transport and metabolism [F]	0.99
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.15 %
Unclassified	root	N/A	14.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.15 %
Unclassified	root	N/A	14.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.15 %
Unclassified	root	N/A	14.85 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	82.18 %
Unclassified	root	N/A	14.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	82.18 %
Unclassified	root	N/A	14.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	80.20 %
Unclassified	root	N/A	14.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	63.37 %
Unclassified	root	N/A	14.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	6.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	26.73 %
Unclassified	root	N/A	14.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	6.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	6.93 %
Leifsonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia	1.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003316\|rootH1_10051227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1770	Open in IMG/M
3300003762\|Ga0055542_1018268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia	1067	Open in IMG/M
3300005327\|Ga0070658_10022152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	5097	Open in IMG/M
3300005327\|Ga0070658_10034195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	4090	Open in IMG/M
3300005327\|Ga0070658_10099244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2406	Open in IMG/M
3300005329\|Ga0070683_102385043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	507	Open in IMG/M
3300005335\|Ga0070666_11313677	Not Available	540	Open in IMG/M
3300005337\|Ga0070682_100472787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	965	Open in IMG/M
3300005339\|Ga0070660_100003514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	10799	Open in IMG/M
3300005365\|Ga0070688_100097956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1928	Open in IMG/M
3300005367\|Ga0070667_100058693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3253	Open in IMG/M
3300005455\|Ga0070663_100618464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	913	Open in IMG/M
3300005519\|Ga0077119_10004857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	15663	Open in IMG/M
3300005519\|Ga0077119_10323602	Not Available	571	Open in IMG/M
3300005539\|Ga0068853_100011512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	7191	Open in IMG/M
3300005539\|Ga0068853_101866153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	583	Open in IMG/M
3300005539\|Ga0068853_101928093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	573	Open in IMG/M
3300005547\|Ga0070693_100259908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1154	Open in IMG/M
3300005563\|Ga0068855_100002051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	24974	Open in IMG/M
3300005563\|Ga0068855_101354410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	735	Open in IMG/M
3300005563\|Ga0068855_102424892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	523	Open in IMG/M
3300005577\|Ga0068857_100045758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3883	Open in IMG/M
3300005577\|Ga0068857_100503697	Not Available	1137	Open in IMG/M
3300005577\|Ga0068857_100743939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	934	Open in IMG/M
3300005577\|Ga0068857_101164869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	746	Open in IMG/M
3300005578\|Ga0068854_100514677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1010	Open in IMG/M
3300005614\|Ga0068856_100352867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1489	Open in IMG/M
3300005614\|Ga0068856_100527188	Not Available	1202	Open in IMG/M
3300005614\|Ga0068856_100615570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1107	Open in IMG/M
3300005614\|Ga0068856_102419094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300005834\|Ga0068851_10858531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	567	Open in IMG/M
3300006642\|Ga0075521_10401828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	667	Open in IMG/M
3300009093\|Ga0105240_10017494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	9659	Open in IMG/M
3300009093\|Ga0105240_10018238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	9433	Open in IMG/M
3300009093\|Ga0105240_10742932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1067	Open in IMG/M
3300009098\|Ga0105245_10009905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	8301	Open in IMG/M
3300009098\|Ga0105245_10099499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	2688	Open in IMG/M
3300009098\|Ga0105245_12669767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	552	Open in IMG/M
3300009101\|Ga0105247_10123543	Not Available	1680	Open in IMG/M
3300009101\|Ga0105247_10335878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1058	Open in IMG/M
3300009148\|Ga0105243_12569299	Not Available	549	Open in IMG/M
3300009174\|Ga0105241_10006144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	8854	Open in IMG/M
3300009174\|Ga0105241_12065163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	562	Open in IMG/M
3300009177\|Ga0105248_10004658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	15181	Open in IMG/M
3300009545\|Ga0105237_10000660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	47919	Open in IMG/M
3300009545\|Ga0105237_10033655	All Organisms → cellular organisms → Bacteria	5193	Open in IMG/M
3300010373\|Ga0134128_10286470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1846	Open in IMG/M
3300010375\|Ga0105239_10916496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1006	Open in IMG/M
3300010375\|Ga0105239_11149881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	894	Open in IMG/M
3300012469\|Ga0150984_109627858	Not Available	956	Open in IMG/M
3300012943\|Ga0164241_11260814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300013104\|Ga0157370_11155673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300013296\|Ga0157374_10663417	Not Available	1055	Open in IMG/M
3300013296\|Ga0157374_12055801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	598	Open in IMG/M
3300014969\|Ga0157376_10513311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1180	Open in IMG/M
3300015171\|Ga0167648_1015544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1878	Open in IMG/M
3300015189\|Ga0167667_1033000	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300022561\|Ga0212090_10607326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	715	Open in IMG/M
3300025254\|Ga0209148_1002390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	6574	Open in IMG/M
3300025254\|Ga0209148_1010166	Not Available	1797	Open in IMG/M
3300025321\|Ga0207656_10000002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	792178	Open in IMG/M
3300025900\|Ga0207710_10062418	Not Available	1693	Open in IMG/M
3300025900\|Ga0207710_10073202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1575	Open in IMG/M
3300025900\|Ga0207710_10602571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	574	Open in IMG/M
3300025909\|Ga0207705_10455817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	992	Open in IMG/M
3300025911\|Ga0207654_10000001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1816198	Open in IMG/M
3300025911\|Ga0207654_10736442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	710	Open in IMG/M
3300025913\|Ga0207695_10005375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	17031	Open in IMG/M
3300025913\|Ga0207695_10007498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	13853	Open in IMG/M
3300025913\|Ga0207695_10665189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	922	Open in IMG/M
3300025919\|Ga0207657_10028734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	5068	Open in IMG/M
3300025920\|Ga0207649_10423455	Not Available	1000	Open in IMG/M
3300025927\|Ga0207687_10003510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	10553	Open in IMG/M
3300025935\|Ga0207709_11628561	Not Available	536	Open in IMG/M
3300025941\|Ga0207711_10001458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22113	Open in IMG/M
3300025949\|Ga0207667_10003905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	18335	Open in IMG/M
3300025949\|Ga0207667_10056542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	4121	Open in IMG/M
3300025949\|Ga0207667_10997539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	825	Open in IMG/M
3300025986\|Ga0207658_10322045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1338	Open in IMG/M
3300026023\|Ga0207677_10056087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia	2697	Open in IMG/M
3300026041\|Ga0207639_10007890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7272	Open in IMG/M
3300026041\|Ga0207639_11248720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300026067\|Ga0207678_11025101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	730	Open in IMG/M
3300026067\|Ga0207678_11556411	Not Available	583	Open in IMG/M
3300026078\|Ga0207702_10042307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3821	Open in IMG/M
3300026078\|Ga0207702_10290436	Not Available	1549	Open in IMG/M
3300026116\|Ga0207674_10287423	Not Available	1593	Open in IMG/M
3300028732\|Ga0302264_1123553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	621	Open in IMG/M
3300029984\|Ga0311332_11723848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300029987\|Ga0311334_10530648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	949	Open in IMG/M
3300030000\|Ga0311337_11062787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	706	Open in IMG/M
3300030002\|Ga0311350_10539815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1048	Open in IMG/M
3300030010\|Ga0302299_10045351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	2485	Open in IMG/M
3300030019\|Ga0311348_11348841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	530	Open in IMG/M
3300031232\|Ga0302323_101191017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	851	Open in IMG/M
3300031507\|Ga0307509_10759546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	635	Open in IMG/M
3300031649\|Ga0307514_10022218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	5160	Open in IMG/M
3300031722\|Ga0311351_10897158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	677	Open in IMG/M
3300031902\|Ga0302322_100800241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1124	Open in IMG/M
3300032074\|Ga0308173_11613508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	610	Open in IMG/M
3300033475\|Ga0310811_11267134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	594	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	78.22%
Environmental	Environmental	21.78%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	78.22%
Terrestrial	Environmental → Terrestrial	20.79%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	44.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.74%
Soil	Environmental → Terrestrial → Soil	10.89%
Peat	Environmental → Terrestrial → Peat	9.90%
Roots	Host-Associated → Plants → Roots	6.93%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Rhizome	Host-Associated → Plants → Rhizome	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	30.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	25.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	6.93%
Loam	Environmental → Terrestrial → Soil → Loam	3.96%
Endophytes	Host-Associated → Plants → Roots → Endophytes	2.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.98%
Epiphytes	Host-Associated → Plants → Roots → Epiphytes	1.98%
Ice	Environmental → Aquatic → Freshwater → Ice	0.99%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	30.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	25.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.96%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Roots → Epiphytes → Unclassified	1.98%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	24.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	13.86%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	9.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	9.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	6.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.94%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	1.98%
Arabidopsis Root	Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root	1.98%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003316	Sugarcane root Sample L1	Host-Associated	Open in IMG/M
3300003762	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005519	Combined assembly of arab plate scrape CL_Col (Combined Assembly)	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015171	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015189	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb2a, glacial moraine)	Environmental	Open in IMG/M
3300022561	Borup_combined assembly	Environmental	Open in IMG/M
3300025254	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028732	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030010	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4	Environmental	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031649	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM	Host-Associated	Open in IMG/M
3300031722	II_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
rootH1_100512273	3300003316	Sugarcane Root And Bulk Soil	MNSPRIRHLVQPSMSVADRNLSITNEVRTIMTTTALPVATARGGAHQQGLELLVSRVAVGMLRWSQHRAARRRMSHDEMMLLRQVQRDSTRAIDLGRAARLG*
Ga0055542_10182681	3300003762	Arabidopsis Root	SPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRAAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLNRLG*
Ga0070658_100221523	3300005327	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSNARHGAQQQGFELLVSRVAVGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG*
Ga0070658_100341952	3300005327	Corn Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAIDLSRLA*
Ga0070658_100992443	3300005327	Corn Rhizosphere	MNSPRIRHLVQPSMSVAERNLTVTNEVRTIMTTAALPPAAAPQGGLELLVSRLAVAMLRWSQQRAVQRSARREPTHDEMALRRRLQRESAKAVDLSRLS*
Ga0070683_1023850431	3300005329	Corn Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTTALPLQTTQQRGLELLVSRAAVSMLRWSQQRTERQLVTHDEMMLLRQTQKDSATATDLARLNRLA*
Ga0070666_113136771	3300005335	Switchgrass Rhizosphere	MNSPRIRHLVQPSMSVADRNLSITNEVRSIMTTTALPTHSAPQGGLELLVSRLAVGMLRWSQQRTARRQPTHDEMILLRQIQRDSAQATDLARLSHLG*
Ga0070682_1004727872	3300005337	Corn Rhizosphere	MNSPRIRHLVQPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQQRAVQRSARLQPSHDEMALLRQIQKESAKAVDLARLF
Ga0070660_1000035147	3300005339	Corn Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALRRRLQKDSANAIDLSRLA*
Ga0070688_1000979561	3300005365	Switchgrass Rhizosphere	MSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALRRRLQKDSANAIDLSRLA*
Ga0070667_1000586933	3300005367	Switchgrass Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQQDSANAVDLSRLA*
Ga0070663_1006184641	3300005455	Corn Rhizosphere	MNSPRIRHLVQPEMSVGDRNLSITNEVRTIMTTTAFPTSNVRRGAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHEEMMLLRQVQKDSANAIDLSRLSRLG*
Ga0077119_100048575	3300005519	Arabidopsis Root	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRAAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLNRLG*
Ga0077119_103236021	3300005519	Arabidopsis Root	TVGRHPMNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPASTAHRTAQQQGVELLVSRVAMGMLRWSQHHAARRRVTHEEMQLLRQVQKDSANAIDLSRLSRLG*
Ga0068853_1000115128	3300005539	Corn Rhizosphere	MKSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA*
Ga0068853_1018661532	3300005539	Corn Rhizosphere	MNSPRIRHLVQPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQQRAVQRSARRQPSHDEMALLRQIQKDSAK
Ga0068853_1019280932	3300005539	Corn Rhizosphere	MRSPRIRHLVQPTMSVADRNLSITNEVRTIMTTTALPLQTAQQRGLELLVSRAAVSMLRWSQQRTARQLVTHDEMMLLRQTQKDSATATDLARLNRLA*
Ga0070693_1002599082	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSTARRGAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG*
Ga0068855_10000205125	3300005563	Corn Rhizosphere	MNSPRIRHLVQPAMSVVNRNLSVTNEVRSIMTTTALPTQSAQQGGLELLVSRLAVGMLRWSQQRTAQRTARRRPTHEEMALLRAIQRDSAKATDLARLNHLA*
Ga0068855_1013544101	3300005563	Corn Rhizosphere	RNLTITNEVRTIMTTTVFPTSTARRSAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHDEMMLLRQVQKDSANAIDLSRLSRLG*
Ga0068855_1024248921	3300005563	Corn Rhizosphere	MRSPRIRHLVQPSMSVADRNLSITNEVRTIMTTTALPARTARRTAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLNRLG*
Ga0068857_1000457583	3300005577	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPARTARRTAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLNRLG*
Ga0068857_1005036974	3300005577	Corn Rhizosphere	PSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALRRRLQKDSANAIDLSRLA*
Ga0068857_1007439392	3300005577	Corn Rhizosphere	MNSLRIRHLVQPEMSVGDRNLSITNEVRTIMTTTAFPTSNVRRGAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHEEMMLLRQVQKDSANAIDLSRLSRLG*
Ga0068857_1011648692	3300005577	Corn Rhizosphere	MNSPRIRHLVQPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQQRAVQRSARLQPSHDEMALLRQIQKESAKAVDLARLF*
Ga0068854_1005146772	3300005578	Corn Rhizosphere	MNRPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA*
Ga0068856_1003528673	3300005614	Corn Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA*
Ga0068856_1005271881	3300005614	Corn Rhizosphere	EMSVADRNLSITNEVRTIMTTTAFPTSNARHGAQQQGFELLVSRVAVGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG*
Ga0068856_1006155702	3300005614	Corn Rhizosphere	MRSPRIRHLVQPTMSVADRNLSITNEVRTIMTTTALPLQTAQQRGLELLVSRAAVSMLRWSQQRTERQLVTHDEMMLLRQTQKDSATATDLARLNRLA*
Ga0068856_1024190941	3300005614	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRTAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQMQKDSANAVDLSRLNRLG*
Ga0068851_108585312	3300005834	Corn Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAVAPQGGVELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA*
Ga0075521_104018282	3300006642	Arctic Peat Soil	MNSPRIRHLVQPSMSVADRNLSITNEVRTIMTTTALPLQATRQRGLELLVSRVAVGMLRWSQQRTARQRVTHEQMMMLRRIERDTATATDLARLTRLG*
Ga0105240_100174946	3300009093	Corn Rhizosphere	MNRPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAVAPQGGVELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA*
Ga0105240_100182383	3300009093	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRTAQQQGVELLVSRVAMRMLRWSQHRAARRRMTHEEMMLLRQVQKDSANAVDLSRLNRLG*
Ga0105240_107429322	3300009093	Corn Rhizosphere	MSVADRNLSITNEVRTIMTTTALPLQTTQQRGLELLVSRAAVSMLRWSQQRTERQLVTHDEMMLLRQTQKDSATATDLARLNRLA*
Ga0105245_100099055	3300009098	Miscanthus Rhizosphere	MNSPRIRHLVQPEMSVDDRNLTITNEVRTIMTTTVFPTSTARRSAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHDEMMLLRQVQKDSANAIDLSRLSRLG*
Ga0105245_100994992	3300009098	Miscanthus Rhizosphere	MNSPRIRHLVYPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA*
Ga0105245_126697672	3300009098	Miscanthus Rhizosphere	MNSPRIRHLVQPTMSVVDRNVTVTNEVRTIMTSTALPMNTARAITRQGGLELLVSRLAVSMLRWSRQRSERLQPTHEQMLLRRQALRETATAA
Ga0105247_101235431	3300009101	Switchgrass Rhizosphere	RIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSNARHGAQQQGFELLVSRVAVGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG*
Ga0105247_103358782	3300009101	Switchgrass Rhizosphere	MSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAIDLSRLA*
Ga0105243_125692992	3300009148	Miscanthus Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPASIARRTAQQQGVELLVSRVAMGMLRWSQHHAARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG*
Ga0105241_100061445	3300009174	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRAAQQQGVELIVSRVAMGMLRWSQHRAARRRMTHEEMMLLRQVQKDSANAVDLSRLNRLG*
Ga0105241_120651632	3300009174	Corn Rhizosphere	MNSPRIRHLVQPSMSVADRNLSITNEVRTIMTTTALPLQTTQQRGLELLVSRAAVSMLRWSQQRTERQLVTHDEMMLLRQTQKDSATA
Ga0105248_1000465810	3300009177	Switchgrass Rhizosphere	MKSPRIRHLVQPSMSVADRNLSITNEVRSIMTTTALPTHSAPQGGLELLVSRLAVGMLRWSQQRTARRQPTHDEMILLRQIQRDSAQATDLARLSHLG*
Ga0105237_1000066029	3300009545	Corn Rhizosphere	MNSSRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSNARHGAQQQGFELLVSRVAVGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG*
Ga0105237_100336556	3300009545	Corn Rhizosphere	MNSLRIRHLVQPSMSVADRNLSITNEVRSIMTTTALPTHSAPQGGLELLVSRLAVGMLRWSQQRTARRQPTHDEMILLRQIQRDSAQATDLARLSHLG*
Ga0134128_102864703	3300010373	Terrestrial Soil	MNSPRIRHLVHPSMSVVERNFSITNEVRTIMTTSAIPVSTGRQHGLELLVSRVAVGMLRWSQKRTARQSATHEEMMMRLRIERDTASALDLARLSKLG*
Ga0105239_109164961	3300010375	Corn Rhizosphere	SMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQQDSANAVDLSRLA*
Ga0105239_111498813	3300010375	Corn Rhizosphere	SMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALRRRLQKDSANAIDLSRLA*
Ga0150984_1096278582	3300012469	Avena Fatua Rhizosphere	MKSPRIRHFVQPPMSVVYRNLSITNEVRSIMTTSALPLNTTQQHGVELLISRLAVGMLRWSQQRTARLSPTHDEMSLLRQIQADTSSALDLARLNRLG*
Ga0164241_112608141	3300012943	Soil	QPSMSVVDRNLSITNEVRTIMTTIALPQHTTQQRGVELLVSRLAVGMLRWSQQRTARRQPTHEEMTLLRQIQSDSANALDLARLNRLS*
Ga0157370_111556732	3300013104	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSNARHGAQQQGFELLVSRVAVGMLRWSQHRAARRRMTHEEMMLLRQVQKDSANAVDLSRLNRLG*
Ga0157374_106634171	3300013296	Miscanthus Rhizosphere	PSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQQDSANAVDLSRLA*
Ga0157374_120558012	3300013296	Miscanthus Rhizosphere	MNSPRIRHLVQPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQQRAVQRSARLQPSHDEMALLRQIQKESAKAVDLA
Ga0157376_105133112	3300014969	Miscanthus Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSTARRGAQQQGFELLVSRVAVGMLRWSQHSTARRRVTHEEMMLLRQVQKDSANAIDLSRLSRLG*
Ga0167648_10155444	3300015171	Glacier Forefield Soil	MKSPRIRHLVQPTMSVADRNLSITNEVRTIMTTTAFPVRASRSSTLQGFELLVSRIAVSMLRWSEQRSARRRPTHDEMMLLRQNQKDSARASNLARLS*
Ga0167667_10330002	3300015189	Glacier Forefield Soil	MNSPRIRHFVQPPMSVVDRNLSVTNEVRTIMTTTALPLHTTRQRGLELLVSRLAVGMLRWSQQRTQRLQLSHEQMMLLREIEMSRATATDLARLSKLG*
Ga0212090_106073262	3300022561	Glacier Valley	VKSPRIRHFVQPPMSVADRNLSDTNEVRTIMTTTALPLHTTHQRGLELLVSRLAVGMLRWSQRRTRRLQVSHEQMMLLRETEASRATATDLARLSKLG
Ga0209148_10023905	3300025254	Arabidopsis Root	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRAAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLNRLG
Ga0209148_10101662	3300025254	Arabidopsis Root	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPASTAHRTAQQQGVELLVSRVAMGMLRWSQHHAARRRVTHEEMQLLRQVQKDSANAIDLSRLSRLG
Ga0207656_10000002262	3300025321	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSNARHGAQQQGFELLVSRVAVGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG
Ga0207710_100624184	3300025900	Switchgrass Rhizosphere	RIRQLVQPEMSVADRNLSITNEVRTIMTTTAFPTSNARHGAQQQGFELLVSRVAVGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG
Ga0207710_100732024	3300025900	Switchgrass Rhizosphere	MNSPRIRHLVQPSMSVADRNLSITNEVRSIMTTTALPTHSAPQGGLELLVSRLAVGMLRWSQQRTARRQPTHDEMILLRQIQRDSAQATDLARLSHLG
Ga0207710_106025712	3300025900	Switchgrass Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAIDLSRLA
Ga0207705_104558172	3300025909	Corn Rhizosphere	MNSPRIRHLVQPSMSVAERNLTVTNEVRTIMTTAALPPAAAPQGGLELLVSRLAVAMLRWSQQRAVQRSARREPTHDEMALRRRLQRESAKAVDLSRLS
Ga0207654_100000011593	3300025911	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRAAQQQGVELIVSRVAMGMLRWSQHRAARRRMTHEEMMLLRQVQKDSANAVDLSRLNRLG
Ga0207654_107364422	3300025911	Corn Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAV
Ga0207695_100053755	3300025913	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRTAQQQGVELLVSRVAMRMLRWSQHRAARRRMTHEEMMLLRQVQKDSANAVDLSRLNRLG
Ga0207695_1000749817	3300025913	Corn Rhizosphere	MNRPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAVAPQGGVELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA
Ga0207695_106651892	3300025913	Corn Rhizosphere	MRSPRIRHLVQPSMSVADRNLSITNEVRTIMTTTALPLQTTQQRGLELLVSRAAVSMLRWSQQRTERQLVTHDEMMLLRQTQKDSATATDLARLNRLA
Ga0207657_100287344	3300025919	Corn Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALRRRLQKDSANAIDLSRLA
Ga0207649_104234552	3300025920	Corn Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA
Ga0207687_100035109	3300025927	Miscanthus Rhizosphere	MNSPRIRHLVQPEMSVDDRNLTITNEVRTIMTTTVFPTSTARRSAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHDEMMLLRQVQKDSANAIDLSRLSRLG
Ga0207709_116285611	3300025935	Miscanthus Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLR
Ga0207711_100014585	3300025941	Switchgrass Rhizosphere	MKSPRIRHLVQPSMSVADRNLSITNEVRSIMTTTALPTHSAPQGGLELLVSRLAVGMLRWSQQRTARRQPTHDEMILLRQIQRDSAQATDLARLSHLG
Ga0207667_1000390516	3300025949	Corn Rhizosphere	MNSPRIRHLVQPAMSVVNRNLSVTNEVRSIMTTTALPTQSAQQGGLELLVSRLAVGMLRWSQQRTAQRTARRRPTHEEMALLRAIQRDSAKATDLARLNHLA
Ga0207667_100565421	3300025949	Corn Rhizosphere	LVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA
Ga0207667_109975393	3300025949	Corn Rhizosphere	RHLVQPEMSVDDRNLTITNEVRTIMTTTVFPTSTARRSAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHDEMMLLRQVQKDSANAIDLSRLSRLG
Ga0207658_103220451	3300025986	Switchgrass Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQQDSANAVDLSRLA
Ga0207677_100560873	3300026023	Miscanthus Rhizosphere	MNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALRRRLQKDSANAIDLS
Ga0207639_100078908	3300026041	Corn Rhizosphere	MKSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQLRAAQRSARLQPSHDDMALLRRLQKDSANAVDLSRLA
Ga0207639_112487203	3300026041	Corn Rhizosphere	MRSPRIRHLVQPTMSVADRNLSITNEVRTIMTTTALPLPTTQQRGLELLVSRAAVGMLRWSQQRTARQRVTHDEMMLLRQIQKESASATDLARLNHLA
Ga0207678_110251011	3300026067	Corn Rhizosphere	PAENVWRARMNSPRIRHLVHPSMSVAERNLTITNEVRTIMTTAALPTAAAPQGGLELLVSRLAVAMLRWSQQRAVQRSARLQPSHDEMALLRQIQKESAKAVDLARLF
Ga0207678_115564112	3300026067	Corn Rhizosphere	MNSPRIRHLVQPEMSVGDRNLSITNEVRTIMTTTAFPTSNVRRGAQQQGFELLVSRVAVGMLRWSQHRTARRRVTHEEMMLLRQVQKDSANAIDLSRLSRLG
Ga0207702_100423072	3300026078	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRTAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQMQKDSANAVDLSRLNRLG
Ga0207702_102904362	3300026078	Corn Rhizosphere	MNSPRIRQLVQPEMSVADRSLSITNEVRTIMTTTAFPTSNARHGAQQQGFELLVSRVAVGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLSRLG
Ga0207674_102874234	3300026116	Corn Rhizosphere	PEMSVADRNLSITNEVRTIMTTTALPASTARRAAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLNRLG
Ga0302264_11235531	3300028732	Fen	MNSPRIRHFVQPTLSVVDRNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLHVTHEQMMILREIE
Ga0311332_117238482	3300029984	Fen	RNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMLLRELETSRAAATDLARLSRLG
Ga0311334_105306482	3300029987	Fen	MNSPRIRHFVQPTLSVVDRNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMRLRELETSRASATDLARLSRL
Ga0311337_110627873	3300030000	Fen	TATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMRLRELETSRASATDLARLSRLG
Ga0311350_105398153	3300030002	Fen	MNSPRIRHFVQPTLSVVDRNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMLLRELETSRASATDLARLSRLS
Ga0302299_100453513	3300030010	Fen	MNSPRIRHFVQPTLSVVDRNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMLLRELETSRAAATDLARLSRLG
Ga0311348_113488411	3300030019	Fen	MNSPRIRHFVQPTLSVVDRNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMLLRELETSRA
Ga0302323_1011910171	3300031232	Fen	MNSPRIRHFVQPTLSVVDRNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMLLRELETSRASATDLARLSRLG
Ga0307509_107595461	3300031507	Ectomycorrhiza	MKSPRIRHLVQPSMSVADRNLSITNEVRTIMTTTALPLQTTQQRGLELLVSRVAVGMLRWSQQRTARQRVTHEEMMLLRRIERDATTAIDLARLG
Ga0307514_100222182	3300031649	Ectomycorrhiza	MNSPRIRHLVHPTMSVVDRNLSVTNEVRTIMTTTTIQLHTTRQGGLERLVSRLAVSMLRWSQHRTERLQLSHEQMMTLREVEQARVSAIDLARLGRMG
Ga0311351_108971582	3300031722	Fen	MNSPRIRHFVQPTLSVVDRNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMRLRELETSRASATDLARLSRLG
Ga0302322_1008002413	3300031902	Fen	MNSPRIRHFVQPTLSVVDRNVSVTNEVRTIMTATALPLHTTRQRGLERLVSRLAVSMLRWSQHRTQRLQLTHEQMMRLRELETSRASATDLARLS
Ga0308173_116135082	3300032074	Soil	MNSPRIRHLVHPPMSVADRNLSITNEVRSIMTTTALPTQSARQGGLELFVSRLAVSMLRWSQQRTDRRTANTRPTHDEMTLLRQLARDSAAATDL
Ga0310811_112671342	3300033475	Soil	RPRMSSPRIRHFVQPSMSVADRNLSITNEVRTIMTTTALPLPTTHQRGLELLVSRAAVSMLRWSQQRTARQLVTHDQMMLLRQTEKDSATATDLARLNRSGRATPGRPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103112

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences