Metagenome / Metatranscriptome Family F103006

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F103006
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	107 residues
Representative Sequence	VIEIKRSNFKILYPNDKRCWLPREAIARVRPQQPAYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGDDFISLSVVPEGMAFMQLELQFR
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.89 %
% of genes near scaffold ends (potentially truncated)	91.09 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (18.812 % of family members)
Environment Ontology (ENVO)	Unclassified (40.594 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.337 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.90% β-sheet: 29.20% Coil/Unstructured: 48.91%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13186	SPASM	8.91
PF01797	Y1_Tnp	8.91
PF08241	Methyltransf_11	4.95
PF00899	ThiF	4.95
PF01040	UbiA	1.98
PF05237	Obsolete Pfam Family	1.98
PF02321	OEP	0.99
PF02082	Rrf2	0.99
PF00069	Pkinase	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	8.91
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.96
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.98
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.99
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.99
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.99
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.99
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.99
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.99
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.99
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	94.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.84 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.99 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.99 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101301891	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105367587	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300003319\|soilL2_10180153	All Organisms → cellular organisms → Bacteria → Acidobacteria	1392	Open in IMG/M
3300004157\|Ga0062590_102883318	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300005180\|Ga0066685_11003250	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300005186\|Ga0066676_10134339	All Organisms → cellular organisms → Bacteria → Acidobacteria	1540	Open in IMG/M
3300005332\|Ga0066388_103263672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300005332\|Ga0066388_106640973	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300005332\|Ga0066388_107570550	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300005406\|Ga0070703_10304518	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300005444\|Ga0070694_101199601	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300005451\|Ga0066681_10081372	All Organisms → cellular organisms → Bacteria	1826	Open in IMG/M
3300005529\|Ga0070741_11665068	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300005530\|Ga0070679_101869210	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300005538\|Ga0070731_10339336	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300005552\|Ga0066701_10011061	All Organisms → cellular organisms → Bacteria	4128	Open in IMG/M
3300005556\|Ga0066707_10052241	All Organisms → cellular organisms → Bacteria → Acidobacteria	2374	Open in IMG/M
3300005556\|Ga0066707_10833292	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300005559\|Ga0066700_10346916	All Organisms → cellular organisms → Bacteria → Acidobacteria	1048	Open in IMG/M
3300005574\|Ga0066694_10134147	All Organisms → cellular organisms → Bacteria → Acidobacteria	1170	Open in IMG/M
3300005576\|Ga0066708_10862114	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300005598\|Ga0066706_11181331	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300005617\|Ga0068859_102560325	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300005713\|Ga0066905_100747613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300005764\|Ga0066903_103362054	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300006032\|Ga0066696_10193391	All Organisms → cellular organisms → Bacteria → Acidobacteria	1294	Open in IMG/M
3300006034\|Ga0066656_10836124	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300006791\|Ga0066653_10044701	All Organisms → cellular organisms → Bacteria → Acidobacteria	1818	Open in IMG/M
3300006796\|Ga0066665_11685337	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300006845\|Ga0075421_100870869	All Organisms → cellular organisms → Bacteria → Acidobacteria	1030	Open in IMG/M
3300006845\|Ga0075421_101449802	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300006852\|Ga0075433_10658558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	918	Open in IMG/M
3300006854\|Ga0075425_102863639	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300006904\|Ga0075424_102116317	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300006904\|Ga0075424_102442204	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300007258\|Ga0099793_10563211	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300009012\|Ga0066710_100150855	All Organisms → cellular organisms → Bacteria	3232	Open in IMG/M
3300009137\|Ga0066709_103926057	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300009147\|Ga0114129_10426103	All Organisms → cellular organisms → Bacteria → Acidobacteria	1744	Open in IMG/M
3300009156\|Ga0111538_11427373	All Organisms → cellular organisms → Bacteria → Acidobacteria	873	Open in IMG/M
3300009162\|Ga0075423_11307754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300010043\|Ga0126380_11707102	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300010043\|Ga0126380_12204048	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300010046\|Ga0126384_11651989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300010048\|Ga0126373_11143754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300010142\|Ga0127483_1116541	All Organisms → cellular organisms → Bacteria → Acidobacteria	835	Open in IMG/M
3300010301\|Ga0134070_10089247	All Organisms → cellular organisms → Bacteria → Acidobacteria	1066	Open in IMG/M
3300010304\|Ga0134088_10569719	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300010320\|Ga0134109_10164873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300010321\|Ga0134067_10394603	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300010325\|Ga0134064_10440978	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300010336\|Ga0134071_10292444	All Organisms → cellular organisms → Bacteria → Acidobacteria	817	Open in IMG/M
3300010336\|Ga0134071_10451276	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300010337\|Ga0134062_10385000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300010358\|Ga0126370_10993561	All Organisms → cellular organisms → Bacteria → Acidobacteria	765	Open in IMG/M
3300010362\|Ga0126377_12419954	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300010366\|Ga0126379_12720346	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300010376\|Ga0126381_103056753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300010398\|Ga0126383_10478499	All Organisms → cellular organisms → Bacteria → Acidobacteria	1300	Open in IMG/M
3300011435\|Ga0137426_1188519	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300012198\|Ga0137364_10906983	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300012200\|Ga0137382_10790866	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300012285\|Ga0137370_10398976	All Organisms → cellular organisms → Bacteria → Acidobacteria	833	Open in IMG/M
3300012356\|Ga0137371_10386270	All Organisms → cellular organisms → Bacteria → Acidobacteria	1086	Open in IMG/M
3300012356\|Ga0137371_10610294	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300012362\|Ga0137361_11546447	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300012918\|Ga0137396_10900915	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300012918\|Ga0137396_10978354	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300012922\|Ga0137394_10099649	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2447	Open in IMG/M
3300012922\|Ga0137394_11384414	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300012944\|Ga0137410_10338054	All Organisms → cellular organisms → Bacteria → Acidobacteria	1200	Open in IMG/M
3300012948\|Ga0126375_10538938	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300012948\|Ga0126375_11936408	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300012971\|Ga0126369_10645732	All Organisms → cellular organisms → Bacteria → Acidobacteria	1132	Open in IMG/M
3300012971\|Ga0126369_11842562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300015359\|Ga0134085_10151526	All Organisms → cellular organisms → Bacteria → Acidobacteria	984	Open in IMG/M
3300015371\|Ga0132258_12072782	All Organisms → cellular organisms → Bacteria → Acidobacteria	1430	Open in IMG/M
3300015371\|Ga0132258_12726021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1232	Open in IMG/M
3300017656\|Ga0134112_10221094	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300017657\|Ga0134074_1366557	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300017659\|Ga0134083_10088258	All Organisms → cellular organisms → Bacteria → Acidobacteria	1211	Open in IMG/M
3300018082\|Ga0184639_10418525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300018431\|Ga0066655_10030999	All Organisms → cellular organisms → Bacteria	2605	Open in IMG/M
3300018431\|Ga0066655_11326843	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300018433\|Ga0066667_10200560	All Organisms → cellular organisms → Bacteria → Acidobacteria	1466	Open in IMG/M
3300018468\|Ga0066662_10219199	All Organisms → cellular organisms → Bacteria → Acidobacteria	1524	Open in IMG/M
3300018468\|Ga0066662_12287062	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300018482\|Ga0066669_10144275	All Organisms → cellular organisms → Bacteria	1740	Open in IMG/M
3300018482\|Ga0066669_10250667	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1400	Open in IMG/M
3300019789\|Ga0137408_1138792	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300021560\|Ga0126371_13257120	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300026297\|Ga0209237_1002272	All Organisms → cellular organisms → Bacteria → Acidobacteria	11534	Open in IMG/M
3300026307\|Ga0209469_1104064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300026313\|Ga0209761_1021843	All Organisms → cellular organisms → Bacteria → Acidobacteria	3989	Open in IMG/M
3300026323\|Ga0209472_1076078	All Organisms → cellular organisms → Bacteria → Acidobacteria	1375	Open in IMG/M
3300026324\|Ga0209470_1162394	All Organisms → cellular organisms → Bacteria → Acidobacteria	975	Open in IMG/M
3300031716\|Ga0310813_11195653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300031740\|Ga0307468_102451291	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300031954\|Ga0306926_11180064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300033158\|Ga0335077_12231235	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300033433\|Ga0326726_10171708	All Organisms → cellular organisms → Bacteria → Acidobacteria	1988	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.12%
Host-Associated	Host-Associated	11.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.14%
Plants	Host-Associated → Plants	11.88%
Aquatic	Environmental → Aquatic	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.97%
Sediment	Environmental → Aquatic → Sediment	1.98%
Peat	Environmental → Terrestrial → Peat	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.91%
Loam	Environmental → Terrestrial → Soil → Loam	7.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	12.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1013018912	3300000364	Soil	SNFKILYPNQKRCWLPLEALVRVRPERLTYDAFLEKLHYLIKKVHALECELVSEEDTHRLTLRIDKIDHTLVDNLRDFLGSAFLSLTVVPEGMAFMQLELQFRDSTTAAWK*
INPhiseqgaiiFebDRAFT_1053675872	3300000364	Soil	YPNDKRCWLPREALARTRPDLSYATFLEKLHYVIKKVHAHECELVSDNGMHRLSLRIDKINDATVDDLRQFLADGFISLIVVPEGMAFMQLELVFTGMKT*
soilL2_101801532	3300003319	Sugarcane Root And Bulk Soil	VIEIKRSNFKILYPNDKRCWLPREAIARVRPEHLDYTGFLERLHYMIRKVHAQECELVSDAGFHRLSLRIDRIDHATVDDLREFLGSSFISLAVVPEGMAFMQLEVKFGV*
Ga0062590_1028833181	3300004157	Soil	YANDKRCWLPREAITKVRPEMDYSTFLEKLHYLMKKVHALESEIVSDNGVHRLALRIDKMDHETVDDIRRFLGDEFISLVVIPEGMAFMQTEILFGKRLGE*
Ga0066685_110032501	3300005180	Soil	IEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRSFLGADFIALSVVPEGMAFMQLELQFR*
Ga0066676_101343391	3300005186	Soil	PEELGLVIEIKRSNFKILYTGDKRCWLPREALVRMRPELEYRTFLEKLCYLIKKVRALECELVLEEGIHRLSLRIDRIDHEIIDDLRRFLGEEFVSLAVVPEGMAFMQVEIRFKTNDARS
Ga0066388_1032636722	3300005332	Tropical Forest Soil	VIEIKRSNFKVLYPNDKRCWLPREAIARVRSQQIEYTTFLEKLHYLIKRVHALECELVSESGIHRLAMRIDRIDAQTVDDLRHFLGAQFISLIVVPEGMAFMQLELQFGNSGSDV*
Ga0066388_1066409731	3300005332	Tropical Forest Soil	LGLVIEIKRSNFKILYPSDKRCWLPREALARVRPDQISYTTFLEKLHYVIKRLHALECELVSEEGMHRMTLRIDRIDHEIIDELRRFLGKGFLSLVVVPEGMAFMQVEIQFKEE*
Ga0066388_1075705502	3300005332	Tropical Forest Soil	KRCWLPREALARVRPENLEYQSFLEKLHYLIKKVHAQECELVSENGHHRLSLRIDKIAHETIDDLRKFLGDGFVSLVVVPEGMAFMQLELQFQFV*
Ga0070703_103045182	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	RNNFKILYSNDKRCWLPREALTRIRPENLEYKTFLERLHYLIKKVHALECELISEAGTHRLSLRIDQIDHETVVDLHRFLNSGFISLVVVPEGMAFMQLELRFRE*
Ga0070694_1011996011	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LVIEIKRSNFKVLYPNDKRCWLPREALARTRPELSYATFLEKLHYMIKKVHAHECELVSDNGTHRLSLRIDRIDHATVDDLRQFLADGFISLTVVPEGMAFMQLELV
Ga0066681_100813722	3300005451	Soil	VIEIKRNNFKILYTGDKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQVEIRFNSGTDVQIPN*
Ga0070741_116650681	3300005529	Surface Soil	MGLVIEIKRNNFKVLYPGDKRCWLPREAIGKLRPTPDYTTLLGKFHYIMTKVRALECEIVSENGTHQLALRVDRMDAHTIDDLRNFLGDRYVSLAVVPEGMAFMQTEISFRD*
Ga0070679_1018692101	3300005530	Corn Rhizosphere	RCWLPREALARVRPEQLDYSGFLEKLHYIIKKVHALECELVSENGTHRLSLRIDQITDVIIDDLRQFLGAGYVSLAVVPEGMAFMQLEMVFQA*
Ga0070731_103393361	3300005538	Surface Soil	YPNDKRCWLPRDAIARIRPEHLEYATFLERLHYLIKKVHAQECELVAEQDGYRLALRIDSIGHDTVDDLRTFLGGNFVSLTVVPEGMAFMQLELRFR*
Ga0066701_100110617	3300005552	Soil	LVIEIKRSNFKILYASDKRCWLPKEAIVRSRPELEYKTFLEKLYYLIKKVHALECELVSENGEHRLTLRIDKMDHETVDDLRRFLGEGFISLVVIPEGMAFMQVEIRFRDNSGTDV*
Ga0066707_100522411	3300005556	Soil	EIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGDDFIALSVVPEGMAFMQLELQFR*
Ga0066707_108332921	3300005556	Soil	EIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKSVRALECELASEGGVHRLTLRIDKIDHDLIDDLRSFLGADFIALSVVPEGMAFMQLELQFR*
Ga0066700_103469162	3300005559	Soil	FKILYANDKRCWLPREAIARLRPEHLDYVTFLERLHYVIKKVHALECELAAEDSEYRLTLRIDKINHELVDDLRNFLADRFVSLAVVPEGMAFMQLELRFRA*
Ga0066694_101341472	3300005574	Soil	RCWLPREAIARVRPQQPAYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGNDFISLSVVPEGMAFIQLELQFR*
Ga0066708_108621142	3300005576	Soil	EELGLVIEIKRSNFKILYPSHKRCWLPREALARFRPEQLGYTTFLERLHYLIKKVHALECELVSEDAIHRLTLRIDKINHELVEDLRAFLGADFVSLTVVPEGMAFMQLEIRFR*
Ga0066706_111813311	3300005598	Soil	WLPREVIARVRPEQMQYAAFLEKLHYLIKRVHALECELVSDSGTHRLSLRVDKIDHQTVDDLRSFLGAEFISLIVVPEGMAFMQLELQFGNSGSDV*
Ga0068859_1025603252	3300005617	Switchgrass Rhizosphere	KRCWLPREALTRMRPEHLEYTTFLERLHYLIKKVHALECELVSVDGIHRLALRIDKIDHETVDDLRRFLGPAFISLAVVPEGMAFMQLELHFGNSGSDV*
Ga0066905_1007476132	3300005713	Tropical Forest Soil	KVLYSNDKRCWLPREAISRVRPEQITYTTFLERLHYLIKRVRALECELVTEGAIHRLSLRIDTIDHQTVDDLREFLGPDFISLSVVPEGMAFMQLELVFGEIRGRLP*
Ga0066903_1033620541	3300005764	Tropical Forest Soil	EIKRSNFKVLYPNGKRCWLPREAIARVRPEQIEYTTFLERLHYLIKRVRALECELVSESGAHRLSLRVDKIDHKTVDDLREFLGPDFISLVVVPEGMAFMQLELLFNSGSDV*
Ga0066696_101933913	3300006032	Soil	YTGDKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQVEIRFNSGTDVQIPN*
Ga0066656_108361241	3300006034	Soil	VIEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRSFLGADFIALSVVPEGMAFMQLELQFR*
Ga0066653_100447011	3300006791	Soil	IEIKRSNFKILYPNDKRCWLPREAIARVRPQQPPYTTFLERLHYLIKKVRALECELAAEGDVHRLTLRIDKINHELIDDLRTFLGDDFVSLSVVPEGMAFMQLELHFR*
Ga0066665_116853371	3300006796	Soil	WGLVIEIKRSNFKILYPNDKRCWLPREAIARVRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKINHELIDDLRTFLGDDFVSLSVVPEGMAFMQLELHFR*
Ga0075421_1008708691	3300006845	Populus Rhizosphere	QLPQELGLVIEIKRSNFKILYANDKRCWLPRDAITKVRPEMDYSTFLEKLHYLMKKVHALESEIVSDNGVHRLALRIDKMDHETVDDIRRFLGDEFISLVVIPEGMAFMQTEILFGKPLGE*
Ga0075421_1014498022	3300006845	Populus Rhizosphere	VIEIKRSNFKILYPNQKRCWLPLEALVRVRPERLTYDAFLEKLHYLIKKVHALECELVSEEDTHRLTLRIDKIDHTLVDNLRDFLGSAFLSLTVVPEGMAFMQLELQFRDSTTTA*
Ga0075433_106585581	3300006852	Populus Rhizosphere	YANDKRCWLPREAITRVRPERIAYTTFLERLHYLIKRVRALECELTTEGVMHRLSLRVDKIDHQTVDDLREFLGPDFLSLAVVPEGMAFMQLEVVFGEIRGRLP*
Ga0075425_1028636391	3300006854	Populus Rhizosphere	VIEIKRSNFKVLYTNDKRCWLPRDAIARVRPERMTYTTFLERLHYLIKRVRALECELASEGVMHRLSLRVDKIDHQTVDDLREFLGPDFLSLAVVPEGMAFMQLEVVFGEIRGRLPSG*
Ga0075424_1021163172	3300006904	Populus Rhizosphere	ELGLVIEIKRSNFKILYANDKRCWLPREVIARLRPEHLDYATFLERLHYLIKKVRALECELVAEAGEYRLTLRIDKINHELVDELRDFLADRFVSLAVVPEGMAFMQLELRFR*
Ga0075424_1024422041	3300006904	Populus Rhizosphere	NFKVLYANDKRCWLPREAITRVRPERIAYTTFLERLHYLIKRVRALECELTTGGAMHRLSLRIDKIDHQTVDDLREFLGPDFISLAVVPEGMAFMQLELHFGNSGSDV*
Ga0099793_105632111	3300007258	Vadose Zone Soil	NDKRCWLPREAVARHHPELTYTSFLETLHYLIKKVHALECELVAEDGVHRLTLRIDRINHELVDDLRAFLAEHFISLTVVPEGMAFMQLEIRFR*
Ga0066710_1001508556	3300009012	Grasslands Soil	LVIEIKRSNFKILYASDKRCWLPKEAIVRSRPELEYKTFLEKLYYLIKKVHALECELVSENGEHRLTLRIDKMDHETVDDLRRFLGDAFISLVVIPEGMAFMQVE
Ga0066709_1039260571	3300009137	Grasslands Soil	NDKRCWLPREAIARVRPEQLDYSAFLARLHYLIKKVNALECELVTREDGHRLALRIDSIGHETIDELRDFLGDKFITLAVVPEGMAFMQLEIRFR*
Ga0114129_104261031	3300009147	Populus Rhizosphere	ELALVIEIKRSNFKVLYANDKRCWLPRDAIARVRPERMAYTTFLERLHYLIRRVHALECELTTEGAMHRLSLRIDKIDAQTVDDLREFLGGDFISLAVVPEGMAFMQLELQFNSGTVA*
Ga0111538_114273732	3300009156	Populus Rhizosphere	VIEIKRNNFKILYPNDKRCWLPREALSRVRPDHLEYATFLEQLHYIIKRVHALDCELVSEEDRHRLTLRIDRLDDHMIDDLRQFLGDSLMSLVAVPEGMAFMQLEIILARSP*
Ga0075423_113077541	3300009162	Populus Rhizosphere	LVIEIKRSNFKVLYPNDKRCWLPREAIVRVRPEQMGYTSFLEKLHYVIKRVHALECELVWEAGTHRLALRIDKIDDKTVDDLRDFLGSDFISLVVVPEGMAFMQLELTFGNSGSDV*
Ga0126380_117071021	3300010043	Tropical Forest Soil	IEIKRSNFKVLYPHDKRCWLPREVIARVRPEEIAYTTFLEKLHYVIKRVHALECELVSDAGVHRLSLRIDKIDHQTVDDLREFLGPDFISLAVVPEGMAFMQLELHFGNSGSDV*
Ga0126380_122040481	3300010043	Tropical Forest Soil	EVGLVIEIKRSNFKILYPSDKRCWLPREALTRVRPDQIAYTTFLEKLHYVIKRVHALECELVSEAGTHRLALRIDKIDDKTVDDLRDFLGSDFISLVVVPEGMAFMQLELTFGNSGSDV*
Ga0126384_116519891	3300010046	Tropical Forest Soil	KRCWLPREALARVRPENLAYKTFLEKLHYLIKKVHAQECELVSENGQHHLSLRIDKIAHETIDDLRRFLGDGFVSLVVVPEGMAFMQLELIFEV*
Ga0126373_111437541	3300010048	Tropical Forest Soil	RSNLKIVYSNDKRCWLPREALARIRPETLKYASFLEKLHYIIKKVHAQECELVSDAGTHRLSLRIDKITHTTSDDLRQFLGEGFVSLTVVPEGMAFMQLELIFQL*
Ga0127483_11165412	3300010142	Grasslands Soil	WLPREAIARFRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKINHELIDDLRTFLGDDFVSLSVVPEGMAFMQLELHFR*
Ga0134070_100892472	3300010301	Grasslands Soil	YPNDKRCWLPREAIARVRPQQPAYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGNDFISLSVVPEGMAFIQLELQFR*
Ga0134088_105697191	3300010304	Grasslands Soil	RSNYKVLYPNDKRCWLPRDAIACVRPEQLDYSGFLERLHYLIKKVHALECELVSGDEGHRLTLRIDSINHETMDELRAFLADKFVFLTVVPEGMAFMQLELRFR*
Ga0134109_101648732	3300010320	Grasslands Soil	RNNFKILYTGDKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQVEIRFNSGTDVQIPN*
Ga0134067_103946031	3300010321	Grasslands Soil	GLVIEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGDDFIALSVVPEGMAFMQLELQFR*
Ga0134064_104409781	3300010325	Grasslands Soil	ELGLVIEIKRSNFKILYANDKRCWLPRETIARVRPEHLDFATFLEQLHYLIKKVHALECELVAENDVHRLTLRIDKINHELVDDLRNFLADRFVSLAVVPEGMAFMQLELRFR*
Ga0134071_102924441	3300010336	Grasslands Soil	DEWGLVIEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRSFLGADFIALSVVPEGMAFMQLELQFR*
Ga0134071_104512761	3300010336	Grasslands Soil	IKRSNFKILYASDKRCWLPKEAIVRSRPELEYKTFLEKLYYLIKKVHALECERESENGEHRLTLRIDKMDHETVDDLRRFLGDAFISLVVIPEGMAFMQVEIRFRDNSGTDV*
Ga0134062_103850002	3300010337	Grasslands Soil	PSHKRCWLPREALARFRPEQLGYTTFLERLHYLIKKVHALECELVSEDAIHRLTLRIDKINHELVEDLRAFLGADFLSLTVVPEGMAFMQLEIRFR*
Ga0126370_109935611	3300010358	Tropical Forest Soil	IEIKRSNFKVLYPNDKRCWLPRDAITKVPPAPDYKTFLGKLHYIIKKVHALECEIVSDNGFHRLALRVDRMDCETVDALRDFLGESFVSLAVVPEGMAFMQTEISFRAL*
Ga0126377_124199541	3300010362	Tropical Forest Soil	GLVIEIKRSNFKILYPNDKRCWLPREAIARVRPQQPAYTTFLERLHYLIKKVQALECELASEGGVHRLTLRIDKINHDLIDDLRTFLGDDFISLSVVPEGMAFMQLELQFR*
Ga0126379_127203461	3300010366	Tropical Forest Soil	VIEIKRSNFKIIYPNDKRCWLPREALARIRPEKLEYSSFLEKLHYVIKKVHAQECELVSDGGTHRLSLRIDKITHSISDDLRQFLGEGFVSLTVVPEGMAFMQLELIFQL*
Ga0126381_1030567531	3300010376	Tropical Forest Soil	PNDKRCWLPREALARIRPEKLEYSSFLEKLHYIIKKVHAQECELVSDAGIHRLSLRIDKITHTISDDLRQFLGEGFVSLTVVPEGMAFMQLELIFEV*
Ga0126383_104784991	3300010398	Tropical Forest Soil	KRCWLPREAISRVRPEQITYTTFLERLHYLIKRVRALECELVTEGAIHRLSLRIDTIDHQTVDDLREFLGPDFISLAVVPEGMAFMQLELHFGNSVIRGRLP*
Ga0137426_11885192	3300011435	Soil	LGLVIEIKRSNFKVLYANDKRCWLPRETIARIRPEMDYSTFLQKLFYLIKKVHAHECEVFSEEGMHRLSLKIDKIDHETVDDIRKFLGTSFISLAVVPEGMAFM
Ga0137364_109069832	3300012198	Vadose Zone Soil	VIEIKRSNFKILYPNDKRCWLPREAIARVRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKINHELIDDLRTFLGDDFVSLSVVPEGMAFMQLELHFR*
Ga0137382_107908662	3300012200	Vadose Zone Soil	FKILYPNDKRCWLPREAIARFRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKINHELIDDLRTFLGDDFVSLSVVPEGMAFMQLELHFR*
Ga0137370_103989762	3300012285	Vadose Zone Soil	LVIEIKRSNFKIIYPNGKRCWLPREALARVRPEHLDYTAFLEKLHYMIKKVRALECELVSEEGTHRLSLRIDKIDHETVDDLRKFLGSAFISLVVVPEGMAFMQLEVHFLA*
Ga0137371_103862703	3300012356	Vadose Zone Soil	IEIKRSNFKILYPNDKRCWLPREAIARFRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKINHELIDDLRTFLGDDFVSLSVVPEGMAFMQLELHFR*
Ga0137371_106102941	3300012356	Vadose Zone Soil	IEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKSVRALECELASEGGVHRLTLRIDKIDHDLIDDLRSFLGADFIALSVVPEGMAFMQLELQFR*
Ga0137361_115464471	3300012362	Vadose Zone Soil	LVIEIKRNNFKILYSTDKRCWLPREAIARHRPELTYATFLERLHYLIKKVHALECELAAEDGVHRLTLRIDKINHELVDDLRAFLSEDFVSLTVVPEGMAFMQLEIRFR*
Ga0137396_109009151	3300012918	Vadose Zone Soil	LNATDKRCLLPGEAIARHRPDLTYATFLERLHYLIKKVHALECELAAEDGVHRLTLRIDKINHELVDDLRAFLSEDFVSLTVVPEGMAFMQLEIRFR*
Ga0137396_109783541	3300012918	Vadose Zone Soil	KRNNFKILYPNDKRCWLPREVVARHHPELTYTSFLERLHYLIKKVHALECELVAEDSVYRLTLRIDKIDHELVDDLRAFLAENFISLTVVPEGMAFMQLELRFR*
Ga0137394_100996491	3300012922	Vadose Zone Soil	KRCWLPREAIARQRPELTYTSFLERLHYVIKKVHALECELVAEDSVHRLTLRIDKINHELVDDLRAFLAENFISLTVVPEGMAFMQLELRFR*
Ga0137394_113844141	3300012922	Vadose Zone Soil	YANDKRCWLPREALVRSRPELEYKTFPEKLYYLIKKVHALECELASENNEHRLTLRIDKMDHETVDDLRRFLGEGFVSLVVVPEGMAFMQVEIRFKN*
Ga0137410_103380541	3300012944	Vadose Zone Soil	KRCWLPKEAIVRSRPELEYKTFLEKLYYLIKKVHALECELVSENGEHRLTLRIDKMDHETVDDLRRFLGDAFISLVVIPEGMAFMQVEIRFRDNSGTDV*
Ga0126375_105389381	3300012948	Tropical Forest Soil	EIKRSNFKVLYPNDKRCWLPREALARVRPEQLDYTGFLPKLHYVMRKVHALECELVSEEGTHRLSLRIDRIDHETVDDLRGFLGPGFISLVVEPEGMAFMQLEVRFR*
Ga0126375_119364081	3300012948	Tropical Forest Soil	ILYRNDKRCWLPREAVARVRPEQLDYTTFLGKLHYLIKKVRALECELVSEEDTHRLTLRIDQINHETVDAIRKFLDTSFISLVVVPEGMAFMQLELRFNSGTVA*
Ga0126369_106457322	3300012971	Tropical Forest Soil	WLPQEALVRVRPERLNYDAFLEKLHYLIKKVHALECELVSEEDTHRLTLRIDRIDHTLVDNLRDFLGSAFLSLTVVPEGMAFMQLELQFRDSATTAWK*
Ga0126369_118425622	3300012971	Tropical Forest Soil	WLPREAIARIRPEQLDYTGFLERLHYIIKKVHALECELVTDNDVHRLSLRIDSITHETIDDLRAFLSERFVSLTVIPEGMAFMQLELRFR*
Ga0134085_101515262	3300015359	Grasslands Soil	IEIKRSNFKILYPNDKRCWLPREAIARVRPQQPAYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGNDFISLSVVPEGMAFIQLELQFR*
Ga0132258_120727823	3300015371	Arabidopsis Rhizosphere	LVIEIKRNNFRLLYPNDKRCWLPREALARVRPERIDYSAFLEKLHYLIKRVHALECELVSESGRHRLSLRIDKIDADTVDDLRNFLGSEFVSLAVVPEGMAFMQLELHFGNSGTVA*
Ga0132258_127260211	3300015371	Arabidopsis Rhizosphere	QELGLVIEIKRSNFKVLYANDKRCWLPRDAITKVRPEMDFSTFLEKLHYLMKKVHALESEIVSDNGVHRLALRIDKMDHETVDDIRRFLGDGFISLVVIPEGMAFMQTEIMFREVPLP*
Ga0134112_102210942	3300017656	Grasslands Soil	VIEIKRSNFKILYPNDKRCWLPREAIARVRPQQPAYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGDDFISLSVVPEGMAFMQLELQFR
Ga0134074_13665571	3300017657	Grasslands Soil	GDKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQVEIRFNSGTDVQIPN
Ga0134083_100882581	3300017659	Grasslands Soil	WGLVIEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRSFLGADFIALSVVPEGMAFMQLELQFR
Ga0184639_104185251	3300018082	Groundwater Sediment	VKRSNFKILYTNDKRCWLPRDAIARMRPDLDYRTFLQKLYYLIKKVHAHECELVSDSGTHRLSLRIDEIDHQTVDDLRTFLADGFVSLTVVPEGMAFMQLELVFRA
Ga0066655_100309993	3300018431	Grasslands Soil	VIEIKRNNFKILYTGDKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQVEIRFNSGTDVQIPN
Ga0066655_113268432	3300018431	Grasslands Soil	VIEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGDDFIALSVVPEGMAFMQLELQFR
Ga0066667_102005601	3300018433	Grasslands Soil	KILYPNDKRCWLPREAIARVRPQQPAYTTFLERLHYLIKKVRALECELASEGGVHRLTLRIDKIDHDLIDDLRTFLGDDFISLSVVPEGMAFMQLELQFR
Ga0066662_102191991	3300018468	Grasslands Soil	LVIEIKRSNFKILYASDKRCWLPKEAIVRSRPELEYKTFLEKLYYLIKKVHALECELVSENGEHRLTLRIDKMDHETVDDLRRFLGEGFISLVVIPEGMAFM
Ga0066662_122870621	3300018468	Grasslands Soil	DKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQVEIRFNSGTDVQIPN
Ga0066669_101442752	3300018482	Grasslands Soil	VIEIKRNNFKILYTGDKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQVEIRFNSGTEVQIPN
Ga0066669_102506673	3300018482	Grasslands Soil	YPSHKRCWLPREALARFRPEQLGYTTFLERLHYLIKKVHALECELVSEDAIHRLTLRIDKINHELVEDLRAFLGADFLSLTVVPEGMAFMQLEIRFR
Ga0137408_11387921	3300019789	Vadose Zone Soil	CWLPKEAIVRSRPELEYKTFLEKLYYLIKKVHALECELVSENGEHRLTLRIDKMDHETVDDLRRFLGDAFISLVVIPEGMAFMQVEIRFRDNSGTDV
Ga0126371_132571202	3300021560	Tropical Forest Soil	ELGLVIEIKRSNFKVLYANDKRCWLPREAIARVRPERMAYTTFLEKLHYLIKRVRALECELTTEGAMHRLSLRIDKVDHETVDDLREFLGPDFISLAVVPEGMAFMQLELHFGNSG
Ga0209237_10022722	3300026297	Grasslands Soil	LVIEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTFLERLHYLIKSVRALECELASEGGVHRLTLRIDKIDHDLIDDLRSFLGADFIALSVVPEGMAFMQLELQFR
Ga0209469_11040641	3300026307	Soil	KRNNFKILYTGDKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQVEIRFNSGTDVQIPN
Ga0209761_10218437	3300026313	Grasslands Soil	LVIEIKRSNFKILYASDKRCWLPKEAIVRSRPELEYKTFLEKLYYLIKKVHALECELVSENGEHRLTLRIDKIDHETVDDLRRFLGEGFISLVVIPEGMAFMQVEIRFRDNSGTDV
Ga0209472_10760782	3300026323	Soil	VIEIKRNNFKILYTGDKRCWLPREALVRMRPEFDYRTFLEKLYYIIKKVRALECELVSEGDTHRLTLRIDRIDLETIDDLRKFLGERFISLAVVPEGMAFMQMEIRFNSGTDVQIPN
Ga0209470_11623942	3300026324	Soil	YTSDKRCWLPREALARILPELDYRTFLEKLYYIIKKVRALECELVSGEDTHRLSLRIDRIDHEIIDDLRKFLGDGFVSLTVVPEGMAFMQVEIRFNSGTDV
Ga0310813_111956531	3300031716	Soil	VIEIKRSNFKILYPNDKRCWLPREALTRMRPEHLEYTTFLERLHYLIKKVHALECELVSVDGIHRLALRIDKIDHETVDDLRRFLGPAFISLAVVTEGMAFMQLELHFGNSGSDV
Ga0307468_1024512912	3300031740	Hardwood Forest Soil	IEIKRSNFKILYANDKRCWLPREAIARLRPEHLDYVTFLERLHYVIKKVHALECELAAEDSEYRLTLRIDKINHELVDDLRNFLADRFISLAVVPEGMAFMQLELRFRA
Ga0306926_111800642	3300031954	Soil	YPNDKRCWLPREAIARLRPELTHTTFLERLHYLIKKVHALECELVSEDGIYRLSLRIDKIDHDLVDDLRNFLAGNFISLTVVPEGMAFMQLELRFR
Ga0335077_122312351	3300033158	Soil	NFKILYPNDKRCWLPREGIAKVRPEPDFRTFLGKLHYVIKKVRALECEIVSENGLHRLALRIDRMDDQTMDDLRSFLGSSFVSLAVIPEGMAFMQTEIFFRNST
Ga0326726_101717082	3300033433	Peat Soil	MGLVIEIKRNNFKILYTNDKRCWLPREALTRIRAELDYTKFLERLHYIIKKVHAHECELVSQDGTHRLALRIDRIDHETMDDLKRFLGDGLISMVVVPEGMAFMQIEIQFSD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103006

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences