Metagenome / Metatranscriptome Family F102983

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102983
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	49 residues
Representative Sequence	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQTTH
Number of Associated Samples	79
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.44 %
% of genes near scaffold ends (potentially truncated)	20.79 %
% of genes from short scaffolds (< 2000 bps)	89.11 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (96.040 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (29.703 % of family members)
Environment Ontology (ENVO)	Unclassified (64.356 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.347 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1JGI25381J37097_10235833 2JGI25381J37097_10358203 3JGI25383J37093_100405972 4JGI25384J37096_101521431 5JGI25382J43887_100447141 6JGI25388J43891_10812881 7Ga0066674_105127352 8Ga0066683_100649212 9Ga0066683_104628372 10Ga0066683_105102252 11Ga0066683_106823612 12Ga0066678_102614672 13Ga0066678_104466562 14Ga0066686_102569523 15Ga0066686_102727612 16Ga0066682_101485033 17Ga0070706_1015708671 18Ga0070698_1014379821 19Ga0070699_1002444482 20Ga0066695_100483882 21Ga0066704_104931592 22Ga0066700_106385331 23Ga0066694_103292081 24Ga0066691_104999882 25Ga0066656_103708232 26Ga0066656_104703063 27Ga0066653_104471862 28Ga0066653_105985962 29Ga0066665_115406501 30Ga0066659_106073941 31Ga0075433_103305201 32Ga0075434_10000447611 33Ga0066710_1027680453 34Ga0066710_1037485891 35Ga0099827_101510462 36Ga0099827_102433503 37Ga0066709_1034887491 38Ga0114129_127300181 39Ga0134088_102538592 40Ga0134088_105765542 41Ga0134109_104132751 42Ga0134071_100977494 43Ga0134071_101874272 44Ga0134071_102544562 45Ga0134062_101461372 46Ga0137364_105328342 47Ga0137364_109340922 48Ga0137383_109124822 49Ga0137382_108648092 50Ga0137365_104718452 51Ga0137399_109214652 52Ga0137380_106484323 53Ga0137380_115514071 54Ga0137379_114281942 55Ga0137378_100521734 56Ga0137378_107493322 57Ga0137377_104938293 58Ga0137370_101100691 59Ga0137387_109347271 60Ga0137387_109838472 61Ga0137372_100609992 62Ga0137386_100627284 63Ga0137386_107829222 64Ga0137386_109514151 65Ga0137366_111231322 66Ga0137384_106664971 67Ga0137385_108393132 68Ga0134058_11510781 69Ga0134051_10283261 70Ga0134061_12901962 71Ga0134048_11451252 72Ga0134049_11924753 73Ga0134060_13761842 74Ga0137419_106007231 75Ga0137407_103768153 76Ga0134077_103591112 77Ga0134075_100274184 78Ga0134069_12125362 79Ga0134074_12198112 80Ga0134083_102334521 81Ga0066667_100543273 82Ga0066667_113705461 83Ga0209350_10395702 84Ga0209234_10423651 85Ga0209234_10718342 86Ga0209235_11495041 87Ga0209238_12103051 88Ga0209239_10346404 89Ga0209155_12709981 90Ga0209801_12248462 91Ga0209266_10273015 92Ga0209266_10831054 93Ga0209375_10562273 94Ga0209803_11646232 95Ga0209159_11656952 96Ga0209378_11864742 97Ga0209160_10928034 98Ga0209157_11699672 99Ga0209590_103282022 100Ga0137415_108759061 101Ga0307469_101809841
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1JGI25381J37097_10235833 2JGI25388J43891_10812881 3Ga0066653_105985962 4Ga0137379_114281942 5Ga0137372_100609992
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1JGI25381J37097_10235833 2JGI25388J43891_10812881 3Ga0066653_105985962 4Ga0137379_114281942 5Ga0137372_100609992
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 66.67% β-sheet: 0.00% Coil/Unstructured: 33.33%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF05685	Uma2	14.85
PF02397	Bac_transf	0.99
PF00072	Response_reg	0.99
PF07617	DUF1579	0.99
PF02452	PemK_toxin	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	14.85
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.99
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.99

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	62.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.99 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.99 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	62.38 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.96 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.99 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	46.53 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	46.53 %
Unclassified	root	N/A	3.96 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002557\|JGI25381J37097_1023583	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1072	Open in IMG/M
3300002557\|JGI25381J37097_1035820	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	840	Open in IMG/M
3300002560\|JGI25383J37093_10040597	Not Available	1533	Open in IMG/M
3300002561\|JGI25384J37096_10152143	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	738	Open in IMG/M
3300002908\|JGI25382J43887_10044714	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2407	Open in IMG/M
3300002909\|JGI25388J43891_1081288	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501	Open in IMG/M
3300005166\|Ga0066674_10512735	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	538	Open in IMG/M
3300005172\|Ga0066683_10064921	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2175	Open in IMG/M
3300005172\|Ga0066683_10462837	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300005172\|Ga0066683_10510225	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	734	Open in IMG/M

Showing 1 to 10 of 101 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.03%
Host-Associated	Host-Associated	2.97%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	2.97%
Terrestrial	Environmental → Terrestrial	97.03%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil	97.03%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	3.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.97%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	46.53%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.97%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	17.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	16.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	29.70%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.72%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M

Showing 1 to 10 of 79 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25381J37097_10235833	3300002557	Grasslands Soil	MDVLIHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGESTQPQTTH*
JGI25381J37097_10358203	3300002557	Grasslands Soil	MDVLIHWIPTLAAALVLTIAGFVLDWRIRAEQRAQVARGESTQPQTTH*
JGI25383J37093_100405972	3300002560	Grasslands Soil	MDVLLHWIPTLAAALVLAIAGFVLDWRIRAERRARAARGESTQPQTTH*
JGI25384J37096_101521431	3300002561	Grasslands Soil	MDVLLHWIPTLAAALVLAIAGFVLDWRIRAERRARAARGESTQPQTTH
JGI25382J43887_100447141	3300002908	Grasslands Soil	MDVLIHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGESTQPHTTH*
JGI25388J43891_10812881	3300002909	Grasslands Soil	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQTTH*
Ga0066674_105127352	3300005166	Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQAARGEST
Ga0066683_100649212	3300005172	Soil	MDVLLHWIPTFAAALVLAIAGFVLDWRSRAERRARAARGESTQPQTTH*
Ga0066683_104628372	3300005172	Soil	MDLLLHWIPTLAAALVLTVAAFVLDWRIRAERRAQAARGESTQPQTTQ*
Ga0066683_105102252	3300005172	Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRDERRAQAARGESTQPQTTH*
Ga0066683_106823612	3300005172	Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARDESTQPQTTH*
Ga0066678_102614672	3300005181	Soil	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQATH*
Ga0066678_104466562	3300005181	Soil	MDLLLHWIPTLAAALVLTVAAFVLDWRIRAERRAQVARGESTQPQTTQ*
Ga0066686_102569523	3300005446	Soil	MMPMSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQVARGESTQPQTTH*
Ga0066686_102727612	3300005446	Soil	LLRSPPSGAIMDLLLHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARDESTQPQTTH*
Ga0066682_101485033	3300005450	Soil	MSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQAARGESTQPQTTH*
Ga0070706_1015708671	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRARATHGDSTQPQTTR*
Ga0070698_1014379821	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSFLVHWIPALAGGFVLLIASWVLEMRIRTERRARATRGESTQPQTTR*
Ga0070699_1002444482	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MMPMSFLVHWIPALAGGFVLLIASWVLETRIRAERRARATRGESTQPQTTH*
Ga0066695_100483882	3300005553	Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQAARGESTRPQTTH*
Ga0066704_104931592	3300005557	Soil	MDLLLHWIPTLAAALVVTVAAFVLDWRIRAERRAQVARDESTQPQTTH*
Ga0066700_106385331	3300005559	Soil	MDLLLHWIPTLAAALVLTVAAFVLDWRIRAERRAQVARGESTQPQTTH*
Ga0066694_103292081	3300005574	Soil	MDVLLHWIPTLAAALVLAIAGFVLDWRSRAERRARAARGESTQPQTTH*
Ga0066691_104999882	3300005586	Soil	MDLLLHWIPTLAAALVVTVAAFVLDWRIRAERRAQVARGESTQPQTTQ*
Ga0066656_103708232	3300006034	Soil	HWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGESTQPQTTH*
Ga0066656_104703063	3300006034	Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRAECRAQAARGESTRPQTTH*
Ga0066653_104471862	3300006791	Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQAARGESTQPQTTH*
Ga0066653_105985962	3300006791	Soil	LLRSPPSGAIMDLLLHWIPTLAAALVVTVAAFVLDWRIRAERRAQVARDESTQPQTTH*
Ga0066665_115406501	3300006796	Soil	MDVLLHWIPTLAAALVLAIAGFVLDWRIRAERRARAARGESTQPLTTH*
Ga0066659_106073941	3300006797	Soil	LLRSPPSGAIMDLLLHWIPTLAAALVLTVAAFVLDWRIRAERRAQVARGESTQPQTTQ*
Ga0075433_103305201	3300006852	Populus Rhizosphere	MMCMSFLVHWIPALAAGFVLLIAGWVLETRIRAERRAQAGRGKSTQPQTTP*
Ga0075434_10000447611	3300006871	Populus Rhizosphere	MSFLVHWIPALAAGFVLLIAGWVLETRIRAERRAQAGRGKSTQPQTTP*
Ga0066710_1027680453	3300009012	Grasslands Soil	MDVLIHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGESTQPQTTH
Ga0066710_1037485891	3300009012	Grasslands Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRDERRAQAARGESTQPQTTH
Ga0099827_101510462	3300009090	Vadose Zone Soil	MPVLIHWIPTLAAALVLTIAGFVLDWRIRAERRVRVARGESTQPQTTH*
Ga0099827_102433503	3300009090	Vadose Zone Soil	MSFLVHWIPALAGGFVLLVASWVLETRIRAERRAQLARGESTQPQATP*
Ga0066709_1034887491	3300009137	Grasslands Soil	MSFLVHWIPALAGGFVLVIASWVLETRIRDERRAQAARGESTQPQTTH*
Ga0114129_127300181	3300009147	Populus Rhizosphere	MSFLVHWIPALAAGFVLLIAGWVLETRIRAERRAQAGRGKST
Ga0134088_102538592	3300010304	Grasslands Soil	MMPMSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQTTH*
Ga0134088_105765542	3300010304	Grasslands Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIRAERPAQVARDESTQPQTTH*
Ga0134109_104132751	3300010320	Grasslands Soil	MDLLLHWIPMLGAALVLTIAGFVLDWRIRAERRAQVARGESTQPQTTH*
Ga0134071_100977494	3300010336	Grasslands Soil	MDILIHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGESTQPQTTH*
Ga0134071_101874272	3300010336	Grasslands Soil	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQVARGESTQPQTTH*
Ga0134071_102544562	3300010336	Grasslands Soil	MDLLLHWIPTLAAALVLAVVGFVLDWRIRAERRAQVARGESTQP*
Ga0134062_101461372	3300010337	Grasslands Soil	KPRSKDDAMSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQTTH*
Ga0137364_105328342	3300012198	Vadose Zone Soil	MDVLLHWIPSFAAALVLAIAAFLLDWRIRLERRAQAARGEPTQPQTTH*
Ga0137364_109340922	3300012198	Vadose Zone Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGESTQPQTTH*
Ga0137383_109124822	3300012199	Vadose Zone Soil	MDLLLHWIHTLAAALVLTVAAFVLDWRIRAERRAQVARDESTQPQTTH*
Ga0137382_108648092	3300012200	Vadose Zone Soil	LLRSPPSGAITDLLLHWIPTLAAALVLTVAAFALDWRIRAERRAQVARDESTQPQTTH*
Ga0137365_104718452	3300012201	Vadose Zone Soil	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQTTL*
Ga0137399_109214652	3300012203	Vadose Zone Soil	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRTQAARGESAQPQSTH*
Ga0137380_106484323	3300012206	Vadose Zone Soil	LLHWIPTLAAALVLTIAGFVLDWRIRAERRARAARGKSTQPQTTH*
Ga0137380_115514071	3300012206	Vadose Zone Soil	MSFLVRWIPALAGGFVLLIASWVLETRIRAERRARATRGE
Ga0137379_114281942	3300012209	Vadose Zone Soil	MSFLVRWIPALAGGFVLLIASWVLETRIRAERRAQA
Ga0137378_100521734	3300012210	Vadose Zone Soil	MSFLIHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQAQTTH*
Ga0137378_107493322	3300012210	Vadose Zone Soil	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRARATRGESTQPQSTH*
Ga0137377_104938293	3300012211	Vadose Zone Soil	MDLLLHWIPTLAAALVLTVAAFALDWRIRAERRAQVARDESTQPQTTH*
Ga0137370_101100691	3300012285	Vadose Zone Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIRAGRGAQVARGESTQPQTTH*
Ga0137387_109347271	3300012349	Vadose Zone Soil	MAVLIHWIPTLAAALVLTIAGFVLDWRIRAERRAQAARGESTQPQTTH*
Ga0137387_109838472	3300012349	Vadose Zone Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIWAERRAQVARGESAQPQTTH*
Ga0137372_100609992	3300012350	Vadose Zone Soil	MTFLSHWIPALAGGVVLLIAAVVLEARIRAERRAQHSRPESTASRPSH*
Ga0137386_100627284	3300012351	Vadose Zone Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIRAERRARAARGKSTQPQTTH*
Ga0137386_107829222	3300012351	Vadose Zone Soil	MSFLVRWIPALAGGFVLLIASWVLETRIRAERRAQLARGESTQPQTTH*
Ga0137386_109514151	3300012351	Vadose Zone Soil	MDVLLHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARDESTQPQTTH*
Ga0137366_111231322	3300012354	Vadose Zone Soil	MDLLLHWIPTLAAALVLMIAGFVLDWRIRAERRAQVARGESTQPQTTH*
Ga0137384_106664971	3300012357	Vadose Zone Soil	AVRMMPMSFLVRWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQAQTTH*
Ga0137385_108393132	3300012359	Vadose Zone Soil	MDLLLHWIPTLAAALVLMIAGFVLDWRIRAERRAQVACGESTQPQPTH*
Ga0134058_11510781	3300012379	Grasslands Soil	RMMPMSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQVARGESTQPQTTH*
Ga0134051_10283261	3300012398	Grasslands Soil	RVMPMSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQAARGESTRPQTTH*
Ga0134061_12901962	3300012399	Grasslands Soil	MSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQVARGESTQPQTTH*
Ga0134048_11451252	3300012400	Grasslands Soil	MSFLVHWIPALAGGFVLVIASSVLETRIRAERRAQAARGESTRPQTTH*
Ga0134049_11924753	3300012403	Grasslands Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQAARGESTRPHTTH*
Ga0134060_13761842	3300012410	Grasslands Soil	MMPMSFLVHWIPALAGGFVLLIASWVLETRIRAERRALVARGESTQPQTTH*
Ga0137419_106007231	3300012925	Vadose Zone Soil	MDVMLHWIPTFAAALILAIAAFVLDWRIRVASRAQAARGESTQPQTTH*
Ga0137407_103768153	3300012930	Vadose Zone Soil	PMSFLVHWIPALAGGFVLLVASWVLETRIRAERRAQAARGESTQPQTTQ*
Ga0134077_103591112	3300012972	Grasslands Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGESTQP*
Ga0134075_100274184	3300014154	Grasslands Soil	MDVLIHWIPTLAAALVLAIAGFVLDWRIRAERRAQVARGESTQPQTTH*
Ga0134069_12125362	3300017654	Grasslands Soil	HWIPTLAAALVLTVAAFVLDWRIRAERRAQAARGESTQPQTTQ
Ga0134074_12198112	3300017657	Grasslands Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIRAERRARAARGKSTQPQTTH
Ga0134083_102334521	3300017659	Grasslands Soil	MMPMSFLVHWIPALAGGVVLLIASWVLETRIRAERRAQVARGESTQPQTTH
Ga0066667_100543273	3300018433	Grasslands Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRAECRAQAARGESTRPQTTH
Ga0066667_113705461	3300018433	Grasslands Soil	MDVLIHWIPTLAAALVLTIAGFVLDWRIRAEQRAQVARGESTQPQTTH
Ga0209350_10395702	3300026277	Grasslands Soil	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQTTH
Ga0209234_10423651	3300026295	Grasslands Soil	PMDVLIHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGESTQPQTTH
Ga0209234_10718342	3300026295	Grasslands Soil	PMDVLIHWIPTLAAALVLTIAGFVLDWRIRAEQRAQVARGESTQPQTTH
Ga0209235_11495041	3300026296	Grasslands Soil	MDVLLHWIPTLAAALVLAIAGFVLDWRIRAERRAQAARGESTQPQTTH
Ga0209238_12103051	3300026301	Grasslands Soil	MDLLLHWIPTLAAALVVTVAAFVLDWRIRAERRAQVARGESTQPQTTQ
Ga0209239_10346404	3300026310	Grasslands Soil	MDVLLHWIPTFAAALVLAIAGFVLDWRSRAERRARAARGESTQPQTTH
Ga0209155_12709981	3300026316	Soil	MSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQT
Ga0209801_12248462	3300026326	Soil	MDLLLHWIPTLAAALVLTVAAFVLDWRIRAERRAQVARGESTQPQTTQ
Ga0209266_10273015	3300026327	Soil	MPMSFLVHWIPALAGGFVLVIVSSVLETRIRAERRAQAARGESTQPQTTH
Ga0209266_10831054	3300026327	Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQAARGESTRPQTTH
Ga0209375_10562273	3300026329	Soil	MPMSFLVHWIPALAGGFVLVIASWVLETRIRAERRAQAARGESTQPQTTH
Ga0209803_11646232	3300026332	Soil	MDLLLHWIPTLAAALVVTVAAFVLDWRIRAERRAQVARDESTQPQTTH
Ga0209159_11656952	3300026343	Soil	MDLLLHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARDESTQPQTTH
Ga0209378_11864742	3300026528	Soil	LKPRSKDDAMSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQAARGESTQPQTTH
Ga0209160_10928034	3300026532	Soil	MDVLIHWIPTLAAALVLTIAGFVLDWRIRAERRAQVARGE
Ga0209157_11699672	3300026537	Soil	MMPMSFLVHWIPALAGGFVLLIASWVLETRIRAERRAQVARGESTQPQTTH
Ga0209590_103282022	3300027882	Vadose Zone Soil	MMPMSFLVHWIPALAGGFVLLVASWVLETRIRAERRAQLARGESTQPQATP
Ga0137415_108759061	3300028536	Vadose Zone Soil	MMPMSFLVHWIPALAGGFVLLIASWVLETRIRAERRTQAARGESAQPQSTH
Ga0307469_101809841	3300031720	Hardwood Forest Soil	MMRMSFLVHWIPALAAGFVLLIAGWVLETRIRAERRAQAGRGKSTQPQTTH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102983

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences