Basic Information | |
---|---|
Family ID | F102784 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 57 residues |
Representative Sequence | MAGLYTGDKQISGDLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAIK |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 47.52 % |
% of genes near scaffold ends (potentially truncated) | 97.03 % |
% of genes from short scaffolds (< 2000 bps) | 89.11 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.16 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (78.218 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (24.752 % of family members) |
Environment Ontology (ENVO) | Unclassified (49.505 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (91.089 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 3.70% β-sheet: 0.00% Coil/Unstructured: 96.30% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.16 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Marine Marine Microbial Mat Aqueous Seawater Sackhole Brine Estuary Water Marine Estuarine Salt Marsh Marine Estuarine Estuarine Water Pelagic Marine Pelagic Marine Marine Seawater Pond Water Water |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSum2010_102472661 | 3300000101 | Marine | MAGLYTGDKQISGDLEQARVVSKKKPHRDLDLSLKIHPIRKDIIPL |
DelMOSpr2010_102503922 | 3300000116 | Marine | MAGLLTGDKSISGNLEQARIVSKKKPWRDLDLSLKIHPIVT |
JGI20151J14362_101583272 | 3300001346 | Pelagic Marine | MAGLYTGDKQISGDLEQARNVSRKKAHRDLDLSLKIHPIRKDIIPLKDDAAIKNAIKN |
JGI24005J15628_100160131 | 3300001589 | Marine | MAGLYTGDKQISGDLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAIK |
JGI24005J15628_100498123 | 3300001589 | Marine | MAGIIQSDKSITGDIAKARIVSRKKSHRDLDLSLKIHPIRKDIIPLKDDNAIKNALR |
JGI24005J15628_100682211 | 3300001589 | Marine | MAGIIQSDKSITGDITKARIVSRKKPHRDLDLSLKIHPIRKDIIPLKDDNAIKNALR |
GOS2224_10133982 | 3300001952 | Marine | MAGLLTGDKSISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPLKDDAAIKNAVKNLLVSNFFERPS |
Ga0070743_101209192 | 3300005941 | Estuarine | MANETSPLIQSDASVSKSISKSKIVARRKGYRDLDLALKIHPIRKDLNILKDDNAIKNAVRNLL |
Ga0070743_101458711 | 3300005941 | Estuarine | MAGLYTGDKQISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPLKDDVAIK |
Ga0066378_102576411 | 3300005946 | Marine | MASTLIQSDKSISGNLSKSKVVARKKGHRDLDLKLGIHPIRKDLNVLKDDNAIKNA |
Ga0070754_103033951 | 3300006810 | Aqueous | MAGLYTGDKQIAGDLEQAKIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAVKNAVRNLLISNFYERPFQSDL |
Ga0099849_13009801 | 3300007539 | Aqueous | MAGLLTGDKSISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPLKDDA |
Ga0102948_10994002 | 3300007623 | Water | MAGLIQSDKSITGDTSKARVVSKRKPHRDLDLSLKIHPIRKDIIPLKDDNAIK |
Ga0105744_10469642 | 3300007863 | Estuary Water | MAGLYTGDKQISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPL |
Ga0102960_10835781 | 3300009000 | Pond Water | MAGLLTSDKQISGNLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAIKNAVRNLLVSNFYERP |
Ga0102960_13110592 | 3300009000 | Pond Water | MASSLIQSDFRISSGLQEQAKVVSKKKSWRDLDLGLTVHPIRKDIIPLKDDAAIKNAVRNLLVTNAYE |
Ga0102963_10205664 | 3300009001 | Pond Water | MAGLLTGDKQISGNLEQAKVVSKKKPWRDLDLSLKIHPIRKDIIPLKDDAAIKNAVKNLLVSN |
Ga0115548_10935712 | 3300009423 | Pelagic Marine | MAGINQSDLSITGDISKAQVVARKKQHRDLDLSLKIHPIRTDIIPLKDDNAIKNALRNLLVSNFYDRPFSRDKGANLKGLL |
Ga0115546_11084091 | 3300009435 | Pelagic Marine | MAGLLTGDKSISGNLEQARIVSKKKPHRDLDLSLKIHTIRKDIIPLKDDAAIKNAVKNL |
Ga0115559_10791643 | 3300009438 | Pelagic Marine | MAGLYTGDKQITGKKQTQVVSKKKPWSDLDLSLKIHPIRKDIIPLRDDAAIKNAVRNLL |
Ga0115557_12813781 | 3300009443 | Pelagic Marine | MAGLYTGDKQISGNLEQARNVSRKKPHRDLDLSLKIHPIRKDIIPLKDDAAIKNAIKNS* |
Ga0115558_13488532 | 3300009449 | Pelagic Marine | MAGLLTGDKSISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPL |
Ga0115555_14473032 | 3300009476 | Pelagic Marine | MAGLYTGDKQISGDLEQARNVSRKKAHRDLDLSLKIHPIRKDIIPLKDD |
Ga0115564_105916552 | 3300009505 | Pelagic Marine | MAGLLTGDKSISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDII |
Ga0182082_11253171 | 3300016771 | Salt Marsh | MASLIQSDKSIIGDVSKAKVVSKKKPWRDLDLSLKIHPIRKDIIPLKDDVAIKNAVKNLLISNFYDRPFAPD |
Ga0182046_14268642 | 3300016776 | Salt Marsh | MAGLLTGDKSISGNLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAIKNAVKNLLVSNFYER |
Ga0181403_10926662 | 3300017710 | Seawater | MAGLYTGDKQISGDLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAI |
Ga0181373_10787921 | 3300017721 | Marine | MTTQTSPLIQSDWSITTEKKSSVVSKNKGHRDLDLSLLIHPIRKDINVLKDDNAVKNAVKNLLITNAFERP |
Ga0181421_10822362 | 3300017741 | Seawater | MATLYTGDKQISGNLEQAKVVSRKKPWRDLDLSLKIHPIR |
Ga0181399_10268741 | 3300017742 | Seawater | MAGLYTGDKQISGDLEQARNVSRKKAHRDLDLSLKIHPIRK |
Ga0181402_11022472 | 3300017743 | Seawater | MAGINQSDFSITSDISKSQIVSRKKPHRDLDLSLKIHPIRKDIIPLKDDNAIKNALKNLLVSNFYDRPFASDKGA |
Ga0181397_10351731 | 3300017744 | Seawater | MAGLYTGDKQISGDLEQARIVSKKKPHRDLDLSLKIHPIRKDIIL |
Ga0181389_11158772 | 3300017746 | Seawater | MAGLYTGDKQISGNLEQARIVSKRKPHRDLDLSLKIHPIRKDIIPLKDDAAIKNAVKNLL |
Ga0181409_10291013 | 3300017758 | Seawater | MAGINQSDLSITGDISKAQVVARKKQHRDLDLSLKIHPIRKDIIPLKDDNAIKNALKNLLVSNFYDRPFASDKGANLK |
Ga0181409_10496602 | 3300017758 | Seawater | MATLYTGDKQISGNLEQAKVVSRKKPWRDLDLSLKIHPIRKDIIPL |
Ga0181408_10378013 | 3300017760 | Seawater | MSTLIQSDKSISRDLSKAKIVSRRKGHRDLDLTLGIHPIRKDLNVLKDDNAVKNAVKNLLITNANER |
Ga0181386_11557872 | 3300017773 | Seawater | MASSPKILSDKSISGDLKRARITSRIKGWKDLDLSLTLHPVRKDIVPLKDDNAIKNSVK |
Ga0181394_10808412 | 3300017776 | Seawater | MAGLYTGDKQISGDLEQARNVSRKKAHRDLDLSLKIHPIR |
Ga0181380_12720672 | 3300017782 | Seawater | MASSPKILSDKSISGDLKRARITSRIKGWKDLDLSLTLHPVRKDIVPLKDDNAIKNSVKNLLIS |
Ga0181379_10891611 | 3300017783 | Seawater | MAGLYTGDKQISGDLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAIKNAIKNLLITNFYERP |
Ga0181565_104715192 | 3300017818 | Salt Marsh | MAGLYTGDKQIAGDLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAA |
Ga0181577_106987722 | 3300017951 | Salt Marsh | MAGLIQSDKSIIGDLKKSRVVSKKKPHRDLDLSLKIHPIRKDII |
Ga0181585_101799623 | 3300017969 | Salt Marsh | MAGLYTGDKRISGKLEQASVVSKKKAWRDLDLSLKIHPIRKDIIPL |
Ga0181585_102261383 | 3300017969 | Salt Marsh | MASLIQSDKSITGDISKAKVVSKKKPWRDLDLSLKIHPIRKDIIPLKDDVAIKNAVRNLLVSNFFDR |
Ga0181569_101614103 | 3300017986 | Salt Marsh | MAGLYTGGKQITGKLEQARIVSKKKPWSDLDLSLKIHPIRKDIIPLKDDAAIKNAV |
Ga0181606_105172981 | 3300018048 | Salt Marsh | MAGLLTGDKSISGNLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAIKNAVKNLLVSNFYERPF |
Ga0181572_108403112 | 3300018049 | Salt Marsh | MASLIQSDKSIIGDVSKSKIVSKKKPWRDLDLSLKIHPIRKDIIPLKDDVAIKNAVRNLLVSNFFD |
Ga0181559_103812291 | 3300018415 | Salt Marsh | MASTGSTKILSDKSIIGDLTKAKITSRVKGWRDLDLSLKLHPIRKDIMPLKDDNAIKNAVKN |
Ga0181553_102449382 | 3300018416 | Salt Marsh | MAGLIQSDRSITGDLKKARVVSKKKPHRDLDLSLKIHPIRKDIIPLKDDNAIKNAL |
Ga0181567_100417731 | 3300018418 | Salt Marsh | MAGLYTGGKQITGKLEQARIVSKKKPWSDLDLSLKIHPIRKDIIPLK |
Ga0181563_100708744 | 3300018420 | Salt Marsh | MAGLLTGDKSISGNLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAIKNAVKNL |
Ga0181591_101361331 | 3300018424 | Salt Marsh | MASLIQSDKSITGDISKAKVVSKKKPWRDLDLSLKIHPIRKDIIPLKDDVAI |
Ga0181566_109410861 | 3300018426 | Salt Marsh | MASLIQSDKSIIGDVSKSKIVSKKKPWRDLDLSLKIHPIRK |
Ga0181564_102818161 | 3300018876 | Salt Marsh | MASTGSTKILSDKSIIGDLTKAKITSRVKGWRDLDLSLKLHPIRKDIMPLKDDNAIKNAVKNLLISNFY |
Ga0181575_103566251 | 3300020055 | Salt Marsh | MAGLYTGDKQIAGDLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAVKNAVRNLLISNFYERPF |
Ga0211651_100918722 | 3300020408 | Marine | MAGLSQADKQVKEGVSASKIVARKKPYRDLDLSLAIHPIRKDIIPLKDDRAIVNAIKNLLVTNFNERPFGSKKGANLVGL |
Ga0211587_104497011 | 3300020411 | Marine | MAGLSQADKQIKDGVSASKIVAKKKPYRDLDLSLAIHPIRKDIIPLKDDRAIVNAIKNLLVTNFNERPFGAGKGANLVGLL |
Ga0211708_103780701 | 3300020436 | Marine | MAGLYTGDKQISGDLEQAKIVSRRKPHRDLDLSLNIHPIRKDIIPLKDDAAVKNAVKNLLITNFYERPFGED |
Ga0211539_100206554 | 3300020437 | Marine | MASTLIQSDKSISDNLSKSKVVARKKGHRDLDLKLGIHPIRKDLNVLKDDNAIKNAIRNLLVT |
Ga0211539_100485643 | 3300020437 | Marine | MAGLYTGDKQISGDLEQAKIVSRKKPHRDLDLSLKIHPIRKDIIPLKDDAAVKNAV |
Ga0211558_100073249 | 3300020439 | Marine | MSTLISNDKRIAGDLAKAKIVSRKKQHRDLDLSLKIHPIRKDIIPLKDDA |
Ga0211518_105381962 | 3300020440 | Marine | MAGIYTGDKQISGDLEQAKIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDAAVKNAIKNLLITNFYER |
Ga0211574_103494772 | 3300020446 | Marine | MASTLIQSDKSISGDLNKSKIVSRKKGHRDLDLKLGIHPVRKDLNVLKDDNAIKNAIRNLLVT |
Ga0211643_103228912 | 3300020457 | Marine | MSTLIQSDKTISGNLSRSKIVSRKKGHRDLDLKLGIHPIRKDLNVLKDDNAVKNAVKNLLIT |
Ga0213858_103126951 | 3300021356 | Seawater | MAGLIQSDKSIIGDLKKSRVVSKKKPHRDLDLSLKIH |
Ga0213860_105204442 | 3300021368 | Seawater | MAGLLTGDKSISGNLEQARIVSKKKPHRDLDLSLKIHPIRKD |
Ga0213865_100129566 | 3300021373 | Seawater | MAGLYTGDKQISGDLEQARVVSKKKPYRDLDLSLKIHPIRKDIIPLKDDAAVKNAVRNLLISNFY |
Ga0213864_105765172 | 3300021379 | Seawater | MAGLIQSDKSIKGDIQKARVVSKKKPWRDLDLSLKIHPIRKDIIPLKDDNAIKNAVRNLLVVIFII |
Ga0222717_101435471 | 3300021957 | Estuarine Water | MAGLIQSDKSITGDTSKARVVSKRKPHRDLDLSLKIHPIRKDIIPLKDDNAIKNAL |
Ga0222718_100726211 | 3300021958 | Estuarine Water | MAGLIQSDKSITGDTSKARVVSKRKPHRDLDLSLKIHPIRKDIIPLKDDNAIKNALRNLLVSNF |
Ga0222718_101080181 | 3300021958 | Estuarine Water | MAGLYTGGKQITGKLEQARVVSKKKPWSDLDLSLKIHPIRKDIIPLKDDAAIKTQ |
Ga0222718_104532011 | 3300021958 | Estuarine Water | MAGLYTGDKQISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPLKDD |
Ga0222716_102560542 | 3300021959 | Estuarine Water | MAGLIQSDKSITGDTSKARVVSKRKPHRDLDLSLKIHPIRKDIIPLKDDN |
Ga0222715_105608782 | 3300021960 | Estuarine Water | MAGLLTGDKQISGNLEQAKVVSKKKPWRDLDLSLKIHPIRKDIIPLKDD |
Ga0222719_100968673 | 3300021964 | Estuarine Water | MAGLLTGDKSISGSLEQARIVSKKKPWRDLDLSLKIH |
Ga0224906_11587531 | 3300022074 | Seawater | MAGINQSDLSITGDISKAQVVARKKQHRDLDLSLKIHPIRKDIIPLK |
Ga0255779_12194551 | 3300022922 | Salt Marsh | MASTGSTKILSDKSIIGDLTKAKITSRVKGWRDLDLSLKLHPIRKDIMPLKDDNAIKNAVKNLLISNFYER |
Ga0255773_101144411 | 3300022925 | Salt Marsh | MAGLIQSDKSIIGDLKKSRVVSKKKPHRDLDLSLKIHPIRKDIIPLKDDNAIKNAL |
Ga0255769_103286441 | 3300022927 | Salt Marsh | MAGLLTGDKSISGNLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDA |
Ga0255770_102522202 | 3300022937 | Salt Marsh | MASSLIQSDYRISGKEEQSKVVSKKKPWRDLDLGLTVHPIRKDIIPL |
Ga0255743_101130153 | 3300023110 | Salt Marsh | MAGLYTGGKQITGKLEQARIVSKKKPWSDLDLSLKIHPIRKDIIPLKDDAAIKNAVKN |
Ga0255751_101042601 | 3300023116 | Salt Marsh | MASLIQSDKSITGDISKAKVVSKKKPWRDLDLSLKIHPIRKDIIPLKDDVAIKNAVKN |
Ga0255757_105280541 | 3300023117 | Salt Marsh | MASLIQSDKSIIGDVSKAKVVSKKKPWRDLDLSLKIHPIRKDIIPLKDDVAIKNAVKNLLITN |
Ga0255761_101650303 | 3300023170 | Salt Marsh | MAGLYTGDKRISGKLEQASVVSKKKAWRDLDLSLKIHPIRKDII |
Ga0228658_10612571 | 3300024297 | Seawater | MATLYTGDKQISGNLEQAKVVSRKKPWRDLDLSLKIHPIRKDI |
Ga0209336_100450533 | 3300025137 | Marine | MAGIIQSDKSITGDITKARIVSRKKPHRDLDLSLKIHPIRKDIIPLKD |
Ga0209336_100737381 | 3300025137 | Marine | MAGIIQSDKSITGDIRKARIVSRKKPHRDLDLSLKIHPIRKDIIPLKD |
Ga0209634_100174128 | 3300025138 | Marine | MAGIIQSDKSITGDITKARIVSRKKPHRDLDLSLKIHPIRKDIIPLKDDNAIKNALRNLLVSNFYD |
Ga0209716_10645932 | 3300025626 | Pelagic Marine | MATTGSPKILSDKSIIGNVKKAKVTSRVKGWRDLDLSLTLHPIRGDIVPLKDDAAIKNSVKNLLITNFY |
Ga0208645_12692461 | 3300025853 | Aqueous | MAGLLTGDKSISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPLKDDAAVKNAV |
Ga0209308_100169821 | 3300025869 | Pelagic Marine | MAGLLTGDKSISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPLKDDAAIKNAVKNLLVSNFFER |
Ga0209631_103731632 | 3300025890 | Pelagic Marine | MATTGSPKILSDKSIIGNVKKAKVTSRVKGWRDLDLSLTLHPIRGDIVPLKDDAAIKNSVKNLLITNFYE |
Ga0209951_10355052 | 3300026138 | Pond Water | MASSLIQSDFKISSGLQEQAKVVSKKKAWRDLDLGLTVHPIRKDIIPLKDDAAIKNAVRN |
Ga0208803_10759812 | 3300027232 | Estuarine | MAGLYTGSKRTTGKLEQASVVAKKKSWSDLDLSLKIHPIRKDIIS |
Ga0208671_101964391 | 3300027757 | Estuarine | MASSPKILSDKSVSGDLKKARVTARVKGWRDLDLSLTLHPIRKDIIPLKDDNAIKNAVRNLLISNFYERP |
Ga0209709_101749122 | 3300027779 | Marine | MSGLYTGDKRITGKKQTQVVSKKKPWSDLDLSLKIHPIRKDIIPLRDDAAIK |
Ga0257110_11246472 | 3300028197 | Marine | MAGIIQSDKSITGDITKARIVSRKKPHRDLDLSLKIHPIRKDIIPLKDDNAIKNALRNLLVSNFYDRPFSRDKGANLKGL |
Ga0307488_101542271 | 3300031519 | Sackhole Brine | MAGLYTGDKQISGNLEQARIVSKKKPWRDLDLSLK |
Ga0307488_105734182 | 3300031519 | Sackhole Brine | MASSPTILSDKSISGDLKKARVTSRIKGWRDLDLSLTLHPIRKDIIPLKDDNAIKNSVKNLLISNFYERP |
Ga0316202_105558822 | 3300032277 | Microbial Mat | MAGLLTGDKSISGNLEQARIVSKKKPWRDLDLSLKIHPIRKDIIPLKDDAAIKNAVKNLLVS |
Ga0348336_110706_754_903 | 3300034375 | Aqueous | MAGLYTGDKQIAGDLEQARIVSKKKPHRDLDLSLKIHPIRKDIIPLKDDA |
⦗Top⦘ |