Metagenome / Metatranscriptome Family F102768

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102768
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	67 residues
Representative Sequence	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGATFHGELDLLDFIRGCLQAPQEVLPAVVDEV
Number of Associated Samples	78
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	35.64 %
% of genes near scaffold ends (potentially truncated)	32.67 %
% of genes from short scaffolds (< 2000 bps)	83.17 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.307 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand (11.881 % of family members)
Environment Ontology (ENVO)	Unclassified (27.723 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (28.713 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.64% β-sheet: 15.15% Coil/Unstructured: 71.21%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03704	BTAD	45.54
PF00291	PALP	14.85
PF00571	CBS	3.96
PF08241	Methyltransf_11	2.97
PF00196	GerE	1.98
PF02585	PIG-L	0.99
PF00589	Phage_integrase	0.99
PF01402	RHH_1	0.99
PF01548	DEDD_Tnp_IS110	0.99
PF13560	HTH_31	0.99
PF03070	TENA_THI-4	0.99
PF12680	SnoaL_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	45.54
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	45.54
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.99
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.31 %
Unclassified	root	N/A	30.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.31 %
Unclassified	root	N/A	30.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.31 %
Unclassified	root	N/A	30.69 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	63.37 %
Unclassified	root	N/A	30.69 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	62.38 %
Unclassified	root	N/A	30.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	52.48 %
Unclassified	root	N/A	30.69 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.69 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.99 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.92 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.92 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	0.99 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.92 %
Streptosporangium canum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	0.99 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0816136	Not Available	685	Open in IMG/M
3300003373\|JGI25407J50210_10007097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2804	Open in IMG/M
3300003373\|JGI25407J50210_10040094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1200	Open in IMG/M
3300003373\|JGI25407J50210_10041825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1173	Open in IMG/M
3300003373\|JGI25407J50210_10084862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	785	Open in IMG/M
3300003373\|JGI25407J50210_10115854	Not Available	661	Open in IMG/M
3300004463\|Ga0063356_105390833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300005562\|Ga0058697_10025261	Not Available	2115	Open in IMG/M
3300005562\|Ga0058697_10324318	Not Available	742	Open in IMG/M
3300005562\|Ga0058697_10476869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300005937\|Ga0081455_10112944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2155	Open in IMG/M
3300005937\|Ga0081455_10695397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	649	Open in IMG/M
3300005981\|Ga0081538_10026230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4082	Open in IMG/M
3300005981\|Ga0081538_10031601	All Organisms → cellular organisms → Bacteria	3566	Open in IMG/M
3300005981\|Ga0081538_10151929	Not Available	1047	Open in IMG/M
3300005985\|Ga0081539_10007443	Not Available	9980	Open in IMG/M
3300006049\|Ga0075417_10001000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7304	Open in IMG/M
3300006844\|Ga0075428_100739687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1047	Open in IMG/M
3300006847\|Ga0075431_102007177	Not Available	534	Open in IMG/M
3300006852\|Ga0075433_10685564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	898	Open in IMG/M
3300007076\|Ga0075435_101868045	Not Available	527	Open in IMG/M
3300009147\|Ga0114129_11333167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	888	Open in IMG/M
3300009157\|Ga0105092_10760024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300009789\|Ga0126307_10172097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1736	Open in IMG/M
3300009789\|Ga0126307_11465632	Not Available	553	Open in IMG/M
3300009797\|Ga0105080_1001603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1624	Open in IMG/M
3300009799\|Ga0105075_1024347	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300009804\|Ga0105063_1053555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	584	Open in IMG/M
3300009817\|Ga0105062_1005914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1791	Open in IMG/M
3300009820\|Ga0105085_1002862	Not Available	2760	Open in IMG/M
3300009837\|Ga0105058_1003487	All Organisms → cellular organisms → Bacteria	2783	Open in IMG/M
3300009840\|Ga0126313_10010300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5867	Open in IMG/M
3300009840\|Ga0126313_10145473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1786	Open in IMG/M
3300009840\|Ga0126313_10638494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	860	Open in IMG/M
3300009840\|Ga0126313_10978986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	692	Open in IMG/M
3300010037\|Ga0126304_10102630	Not Available	1810	Open in IMG/M
3300010038\|Ga0126315_10160449	Not Available	1336	Open in IMG/M
3300010145\|Ga0126321_1046042	Not Available	695	Open in IMG/M
3300010166\|Ga0126306_10500484	Not Available	961	Open in IMG/M
3300010362\|Ga0126377_12865689	Not Available	556	Open in IMG/M
3300012355\|Ga0137369_10489666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	871	Open in IMG/M
3300012358\|Ga0137368_10765346	Not Available	601	Open in IMG/M
3300012360\|Ga0137375_10367124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1271	Open in IMG/M
3300012360\|Ga0137375_10996102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	659	Open in IMG/M
3300012938\|Ga0162651_100047062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	672	Open in IMG/M
3300012939\|Ga0162650_100010944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1180	Open in IMG/M
3300012941\|Ga0162652_100010524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	1140	Open in IMG/M
3300014965\|Ga0120193_10006632	Not Available	984	Open in IMG/M
3300015265\|Ga0182005_1179466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	628	Open in IMG/M
3300017965\|Ga0190266_10032707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1672	Open in IMG/M
3300017965\|Ga0190266_10615008	Not Available	661	Open in IMG/M
3300018031\|Ga0184634_10156942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1023	Open in IMG/M
3300018052\|Ga0184638_1242302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	623	Open in IMG/M
3300018052\|Ga0184638_1249672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	611	Open in IMG/M
3300018054\|Ga0184621_10029382	Not Available	1747	Open in IMG/M
3300018072\|Ga0184635_10061773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1455	Open in IMG/M
3300018073\|Ga0184624_10016897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2659	Open in IMG/M
3300018075\|Ga0184632_10007683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	4492	Open in IMG/M
3300018075\|Ga0184632_10150583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1026	Open in IMG/M
3300018076\|Ga0184609_10208977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	910	Open in IMG/M
3300018078\|Ga0184612_10104454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1483	Open in IMG/M
3300018081\|Ga0184625_10477565	Not Available	634	Open in IMG/M
3300018465\|Ga0190269_10682312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	714	Open in IMG/M
3300019767\|Ga0190267_10553966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300022756\|Ga0222622_10011425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4229	Open in IMG/M
3300026791\|Ga0208072_103561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	774	Open in IMG/M
3300026888\|Ga0209900_1006388	Not Available	866	Open in IMG/M
3300027006\|Ga0209896_1035265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	574	Open in IMG/M
3300027018\|Ga0208475_1002250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1855	Open in IMG/M
3300027056\|Ga0209879_1012994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1361	Open in IMG/M
3300027511\|Ga0209843_1016775	Not Available	1460	Open in IMG/M
3300027718\|Ga0209795_10047695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1313	Open in IMG/M
3300027750\|Ga0209461_10010668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1555	Open in IMG/M
3300027873\|Ga0209814_10002844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6395	Open in IMG/M
3300027907\|Ga0207428_10208403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1469	Open in IMG/M
3300027949\|Ga0209860_1000217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7746	Open in IMG/M
3300027961\|Ga0209853_1009683	All Organisms → cellular organisms → Bacteria	2977	Open in IMG/M
3300028590\|Ga0247823_11397093	Not Available	525	Open in IMG/M
3300028592\|Ga0247822_10344569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1149	Open in IMG/M
3300028597\|Ga0247820_10858462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	641	Open in IMG/M
3300028719\|Ga0307301_10094244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	946	Open in IMG/M
3300028876\|Ga0307286_10044720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1492	Open in IMG/M
3300028878\|Ga0307278_10231920	Not Available	821	Open in IMG/M
3300028881\|Ga0307277_10138665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1050	Open in IMG/M
3300028881\|Ga0307277_10326629	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300030336\|Ga0247826_10388758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1027	Open in IMG/M
3300030496\|Ga0268240_10025379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1154	Open in IMG/M
3300030496\|Ga0268240_10143616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	585	Open in IMG/M
3300030499\|Ga0268259_10011522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1555	Open in IMG/M
3300030510\|Ga0268243_1072217	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300030510\|Ga0268243_1154148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	557	Open in IMG/M
3300030516\|Ga0268255_10087561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	948	Open in IMG/M
3300031901\|Ga0307406_10144368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1689	Open in IMG/M
3300031903\|Ga0307407_10104641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1764	Open in IMG/M
3300031903\|Ga0307407_10199284	Not Available	1340	Open in IMG/M
3300031903\|Ga0307407_11291417	Not Available	572	Open in IMG/M
3300031995\|Ga0307409_100302542	Not Available	1488	Open in IMG/M
3300031995\|Ga0307409_101482967	Not Available	705	Open in IMG/M
3300032004\|Ga0307414_12064871	Not Available	532	Open in IMG/M
3300032159\|Ga0268251_10068208	Not Available	1206	Open in IMG/M
3300034172\|Ga0334913_007813	Not Available	2702	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.36%
Host-Associated	Host-Associated	35.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.50%
Plants	Host-Associated → Plants	35.64%
Aquatic	Environmental → Aquatic	13.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.84%
Sediment	Environmental → Aquatic → Sediment	11.88%
Roots	Host-Associated → Plants → Roots	7.92%
Phylloplane	Host-Associated → Plants → Phylloplane	5.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.96%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.97%
Freshwater	Environmental → Aquatic → Freshwater	1.98%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.88%
Sand	Environmental → Terrestrial → Soil → Sand	11.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	7.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.97%
Loam	Environmental → Terrestrial → Soil → Loam	1.98%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	11.88%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	7.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.99%

Habitat	Taxonomy	Distribution
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	11.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.91%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	7.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.93%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.99%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.99%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009797	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20	Environmental	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026791	Grasslands soil microbial communities from Kansas, USA that are Nitrogen fertilized - NN591 (SPAdes)	Environmental	Open in IMG/M
3300026888	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027949	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_08161362	3300000033	Soil	LKATLRPALHHERMQTFLVRVWTPAAXEEXXERRPLSGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPAVVDEV*
JGI25407J50210_100070974	3300003373	Tabebuia Heterophylla Rhizosphere	MQTFLVRVWTPAAGEEDDGRRRFSGLVEHVACRRSETFQGELDLLEFINGCLQAHQGVRRAAGDEA*
JGI25407J50210_100400942	3300003373	Tabebuia Heterophylla Rhizosphere	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGATFHGELDLLDFIRGCLQAPQEVLPAVVDEV*
JGI25407J50210_100418252	3300003373	Tabebuia Heterophylla Rhizosphere	MQTFLVRVWTPAAGEEDDERPRFSGVVEHVGSKRKGTFQGELDLLDFIQGCLRAPQEGRQAVVDEV*
JGI25407J50210_100848622	3300003373	Tabebuia Heterophylla Rhizosphere	MQTFLVRVWIPAAGEEDDERRPLSGVVEHVASRRGAAFHGELDLLDFIRGCLQAPPEVLPAVVDEV*
JGI25407J50210_101158542	3300003373	Tabebuia Heterophylla Rhizosphere	MPRMQTFLVRVWTPAAGEEDDERLHFSGVVEHVASQRKGTFQGELDLLDFIQGCLQAPQEVREAVVDEV*
Ga0063356_1053908331	3300004463	Arabidopsis Thaliana Rhizosphere	MRMQTFLVRVWIPAAAEEDDERRPLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPAVVDEA*
Ga0058697_100252612	3300005562	Agave	MQTFLVRVWTPAAGEEDDERLRLSGVVEHVASRRRGTFQGELDLLDFIQGCLQAPQGVRHAVADEA*
Ga0058697_103243181	3300005562	Agave	LKATLRPAPHHARMQTFLVRVWTPAAAEENDERRPLSGVVEHVASRRGVTFHGELDLLDFIRGCLQAPPEVLPAVVDEV*
Ga0058697_104768691	3300005562	Agave	MQTFLVRVWTPAAGEEADERRPLSGVVEHVASRRGTTFHGELDLLTFVRGCVQASPEVLPAVVDEV*
Ga0081455_101129442	3300005937	Tabebuia Heterophylla Rhizosphere	MQTFLVRVWIPAAAEEDDERRPLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPQEVLPPVVDKV*
Ga0081455_106953972	3300005937	Tabebuia Heterophylla Rhizosphere	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGVAFHGELDLLDFIRGCLQAPQEVLPAVADEV*
Ga0081538_100262302	3300005981	Tabebuia Heterophylla Rhizosphere	MQTFLVRVWTPAAGEEDDERLHFSGVVEHVASQRKGTFQGELDLLDFIQGCLQAPQEVREAVVDEV*
Ga0081538_100316011	3300005981	Tabebuia Heterophylla Rhizosphere	WIPAAAEENDERRPLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPPVVDKV*
Ga0081538_101519291	3300005981	Tabebuia Heterophylla Rhizosphere	VRMQTFLVRVWIPAADEENDERRPLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPPVVDKV*
Ga0081539_100074432	3300005985	Tabebuia Heterophylla Rhizosphere	VSHHAHMQTFLVRVWIPAAGEEDDERRPLSGVVEHVASRRGARFHGEFDLLDFIHGCLQPPQEVLPAVIDEV*
Ga0075417_100010002	3300006049	Populus Rhizosphere	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFQGELDLLDFIRGCLQAPQEVLPAVVDEV*
Ga0075428_1007396872	3300006844	Populus Rhizosphere	MQTFLVRVWIPAAAEEDDERRPLSGVVEHVASRRGATFHGEFDLLDFIRGCLQTPPEVLPPVVDKV*
Ga0075431_1020071771	3300006847	Populus Rhizosphere	VWTPAAGEENDERRPLSGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPAVVDEA*
Ga0075433_106855642	3300006852	Populus Rhizosphere	VWTPAAGEENDERRPLSGVVEHVASRRGATFHGEFDLLDFIRGCLQTPPEVLPPVVDKV*
Ga0075435_1018680452	3300007076	Populus Rhizosphere	GHLKATLRPAAHDVCMQTFLVRVWIPAAAEEDDKRRPLSGVVEHVASRRGATFHGEFDLLDFIRGCLQAPQEVLPAVVDEV*
Ga0114129_113331671	3300009147	Populus Rhizosphere	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFQGELDLLDFIRGCLQAPQEVL
Ga0105092_107600242	3300009157	Freshwater Sediment	MQTFLVRVWTPAAGEENDERRPLSGVVEHVATRRGTTFQGELDLLDFIRGCLQAPPEVLPAVVDEV*
Ga0126307_101720971	3300009789	Serpentine Soil	MQTFLVRVWTPAAGEENDERRPLNGVVEHVASRRGMTFHGEFDLLDFIRGCLQAPQEVLPAVVDEV*
Ga0126307_114656321	3300009789	Serpentine Soil	APHHARMQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFHGELDLLDFIRGCLQAPQEVLPAVVDEV*
Ga0105080_10016032	3300009797	Groundwater Sand	MQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQEVRQAVVDEV*
Ga0105075_10243472	3300009799	Groundwater Sand	MQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEV*
Ga0105063_10535551	3300009804	Groundwater Sand	MQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQ
Ga0105062_10059142	3300009817	Groundwater Sand	MQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEA*
Ga0105085_10028624	3300009820	Groundwater Sand	ADHARMQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEV*
Ga0105058_10034874	3300009837	Groundwater Sand	WTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQEVRQAVVDEV*
Ga0126313_100103003	3300009840	Serpentine Soil	MQTFLVRVWTPAAGEEDEERPRLSGMVEHVASRRRETFQGELDLLDFIQGCLQTPQEVRRAIVDEA*
Ga0126313_101454732	3300009840	Serpentine Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFHGELDLLDFIRGCLQAPQEVLPAVVDEV*
Ga0126313_106384942	3300009840	Serpentine Soil	MQTFLVRVWIPAAAEEDDERRLLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPPVVDKV*
Ga0126313_109789861	3300009840	Serpentine Soil	MQTFLVRVWTPAAGEENDERHPLNGVVEHVASRRGMTFHGELDLLDFIRGCLQAPQEVLP
Ga0126304_101026301	3300010037	Serpentine Soil	MQTFLVRVWTPAAGEENDERRPLNGVVEHVASRRGVTFHGELDLLDFIRGCLQAPQEVLPAVVDEV*
Ga0126315_101604491	3300010038	Serpentine Soil	MQTFLVRVWTPAAGEENDERRPLNGVVEHVASRRGMTFHGELDLLDFIRGCLQAPQEVLPAVVDEV*
Ga0126321_10460422	3300010145	Soil	VRVWTPAAGEEDDERLRLSGVVEHVASRRRGTFQGELDLLDFIQGCLQAPQGVRQAVADEA*
Ga0126306_105004841	3300010166	Serpentine Soil	KATLRPAPHHRRMQTFLVRVWTPAAGEENDERRPLNGVVEHVASRRGMTFHGEFDLLDFIRGCLQAPQEVLPAVVDEV*
Ga0126377_128656892	3300010362	Tropical Forest Soil	MQTFLVRVWIPAAAEEDDERRPLSGVVEHVASRRGATFHGELDLLDFIRGCLQTPREVLPPVVDKV*
Ga0137369_104896661	3300012355	Vadose Zone Soil	MQTFLVRVWTPAAGGEDDERRPLSGMVEHVAARRGATFHGELDLLDFIHGCLQTPQQVLPAVLDEA*
Ga0137368_107653462	3300012358	Vadose Zone Soil	RMQTFLVRVWTPAAGEEDDERRPLSGVVEHVASRRGATFHGELDLLDFIHGCLQAPQEVLPAVLDEV*
Ga0137375_103671243	3300012360	Vadose Zone Soil	MQTFLVRVWTPAAGEEDDERRPLSGVVEHVASRRGATFHGELDLLDFIHGCLQAPQEVLPAVLDEV*
Ga0137375_109961021	3300012360	Vadose Zone Soil	VRVWTPAAGEEDDERRPLSGMVEHVAARRGATFHGELDLLDFIHGCLQTPQEVLPAAVDEA*
Ga0162651_1000470622	3300012938	Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGMTFHGEFDLLDFIRGCLQAPPEVLPAVVDEV*
Ga0162650_1000109442	3300012939	Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFHGELDLLDFIRGCLQAPPEVLPAVVDEV*
Ga0162652_1000105243	3300012941	Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGATFHGELDLLDFIRGRLQAPPEVLPAVVDEV*
Ga0120193_100066322	3300014965	Terrestrial	MPRMQTFLVRVWTPAAGEEDDERLRFTGVVEHVASQRKGTFQGELDLLDFIQGCLQAPQEVRQAVVDEV*
Ga0182005_11794662	3300015265	Rhizosphere	MQTFLVRVWTPAAGEENDDRRPLNGVVEHVASRRGVTFHGELDLLDFIRGCLQAPPEVLPAVVDEV*
Ga0190266_100327072	3300017965	Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGATFQGELDLLDFIRGCLQAPPEVLPAVVDEV
Ga0190266_106150081	3300017965	Soil	TFLVRVWIPAAAEEDDERRPLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPAVVDEV
Ga0184634_101569422	3300018031	Groundwater Sediment	MQTFLVRVWTPAAGEEDDGRLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEV
Ga0184638_12423022	3300018052	Groundwater Sediment	MRRMQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDE
Ga0184638_12496722	3300018052	Groundwater Sediment	MQTFLVRVWTPAAGEEDDGRLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDE
Ga0184621_100293821	3300018054	Groundwater Sediment	MQTFLVRVWTPAAGEENDERRRLSGVVEHVASRRGTTFHGEFDLLDFIRGCLQARPEVLPAVVDEV
Ga0184635_100617732	3300018072	Groundwater Sediment	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPAVVDEV
Ga0184624_100168973	3300018073	Groundwater Sediment	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFHGEFDLLDFIRGCLQARPEVLPAVVDEV
Ga0184632_100076833	3300018075	Groundwater Sediment	MRRMQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAV
Ga0184632_101505831	3300018075	Groundwater Sediment	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFHGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0184609_102089772	3300018076	Groundwater Sediment	MQTFLVRVWTPAAGEEDDERLRLSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRRAVVDEA
Ga0184612_101044542	3300018078	Groundwater Sediment	MRRMQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEV
Ga0184625_104775651	3300018081	Groundwater Sediment	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFHGEFDLLDFIRGCLQAPPEVLPAVVDKV
Ga0190269_106823121	3300018465	Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGATFQGELDLLDFIRGCLQAPPEVLPAVVDE
Ga0190267_105539662	3300019767	Soil	MQTFLVRVWTPAAGEENDERRPLNGVVEHVASRRGVTFHGELDLLDFMRGCLQAPPEALPAVVDEV
Ga0222622_100114251	3300022756	Groundwater Sediment	MQTFLVRVWTPAAGEENDERRRLSGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPAVVDEV
Ga0208072_1035611	3300026791	Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVGSRRGATFHGELDLLDFIRGCLQAPPEVLPAVVDEV
Ga0209900_10063882	3300026888	Groundwater Sand	TRTMRRMQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQEVRQAVVDEV
Ga0209896_10352651	3300027006	Groundwater Sand	MQTFLVRVWTPAAGEEDDERLRLSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEA
Ga0208475_10022502	3300027018	Soil	MQTFLVRVWTPAADEEADERRPLSGVVEHVASRRGTTFHGELDLLDFIRGCLQAPPEVLPAVVDEV
Ga0209879_10129942	3300027056	Groundwater Sand	MQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQEVRQAVVDEV
Ga0209843_10167752	3300027511	Groundwater Sand	RMQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQEVRQAVVDEV
Ga0209795_100476952	3300027718	Agave	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGVTFHGELDLLDFMRGCLQAPPEVLPAVVDEV
Ga0209461_100106682	3300027750	Agave	MQTFLVRVWTPAAGEENDERRSLNGVVEHVASRRGVTFHGELDLLDFIRGCLQAPPEVLPAVVDEV
Ga0209814_100028442	3300027873	Populus Rhizosphere	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFQGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0207428_102084031	3300027907	Populus Rhizosphere	MRMQTFLVRVWIPAAAEEDDERRPLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPAVVDEA
Ga0209860_10002174	3300027949	Groundwater Sand	MQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEV
Ga0209853_10096831	3300027961	Groundwater Sand	ADHARMQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEV
Ga0247823_113970931	3300028590	Soil	TPHHARMQTFLVRVWTPAAGEENDERRPISGVVEHVASRRGATFQGELDLLDFIHGCLQAPQEVLPAVVDEV
Ga0247822_103445691	3300028592	Soil	MQTFLVRVWTPAAGEENDERRPISGVVEHVASRRGATFQGELDLLDFIHGCLQAPQEVLPAVVDEV
Ga0247820_108584622	3300028597	Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGATFQGELDLLDFIHGCLQAPQEVLPAVVDEV
Ga0307301_100942442	3300028719	Soil	MQTFLVRVWTPAAGEEDDERLRLSGVVEHVASQRRGTFQGELDLLDFIQGCLQTPQGVRQAVVDEV
Ga0307286_100447201	3300028876	Soil	MQTFLVRVWTPAAGEENDERRRLSGVVEHVASRRGTTFHGEFDLLDFIRGCLQAPPEVLPAVVDEV
Ga0307278_102319202	3300028878	Soil	HARKQTFLVRVWTPAAGEEADERRPLSGVVEHVASRRGTTFHGELDLLTFVRGCVQASPEVLPAVVDEV
Ga0307277_101386651	3300028881	Soil	MQTFLVRVWTPAAGEEADERRPLSGVVEHVASRRGTTFHGELDLLTFVRGCVQASPEVLPAVVDEV
Ga0307277_103266292	3300028881	Soil	GNPKATLRFTRTMRRMQTFLVRVWTPAAGEEDDERLRFSGVVEHVASQRRGTFQGELDLLDFIQGCLQAPQGVRQAVVDEV
Ga0247826_103887582	3300030336	Soil	MQTFLVRVWTPAAGEENDERRPLSGVVEHVATRRGATFQGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0268240_100253792	3300030496	Soil	MQTFLVRVWTPAAGEENDERRPLNGVVEHVASRRGVTFHGELDLLDFMRGCLQAPPEALPAAVDEV
Ga0268240_101436162	3300030496	Soil	MQTFLVRVWTPAAGEENDERRPLNGVVEHVASRRGVTFHGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0268259_100115222	3300030499	Agave	MQTFLVRVWTPAAGEENDERRSLNGVVEHVASRRGVTFHGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0268243_10722172	3300030510	Soil	MQTFLVRVWTPAAGEEDDERLRLSGVVEHVASRRRGTFQGELDLLDFIQGCLQAPQGVRHAVADKA
Ga0268243_11541481	3300030510	Soil	MQTFLVRVWTPAAGEENDERRPLNGVVEHMASRRGMTFHGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0268255_100875611	3300030516	Agave	MPGMQTFLVRVWTPAAGEEDDERLRLSGVVEHVASRRRGTFQGELDLLDFIQGCLQAPQGVRHAVVDEA
Ga0307406_101443682	3300031901	Rhizosphere	MQTFLVRVWTPAAGEEDEERPRLSGMVEHVASRRRETFQGELDLLDFIQGCLQTPQEVRRAIVDEA
Ga0307407_101046411	3300031903	Rhizosphere	NFQATLRPAPHHARMQTFLVRVWTPAAGEENDERRPLSGVVEHVASRRGTTFHGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0307407_101992841	3300031903	Rhizosphere	KATLRPAPHHARMQTFLVRVWTPAAGEENDERRPLNGVVEHVASRRGVTFHGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0307407_112914171	3300031903	Rhizosphere	FLVRVWIPAAAEEDDERRLLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPPVVDKV
Ga0307409_1003025422	3300031995	Rhizosphere	MQTFLVRVWTPAAGEENDERRPLSGVVEHVASRHGTTFQGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0307409_1014829671	3300031995	Rhizosphere	MQTFLVRVWIPAAAEEDDERRLLRGVVEHVASRRGATFHGELDLLDFIRGCLQAPPEVLPPVVDKV
Ga0307414_120648712	3300032004	Rhizosphere	APHHACMQTFLVRVWTPAAGEENDERRPLNGVVEHMASRRGVTFHGELDLLDFIRGCLQAPQEVLPAVVDEV
Ga0268251_100682081	3300032159	Agave	LKATLRPAPHHARMQTFLVRVWTPAAAEENDERRPLSGVAEHVASRRGVTFHGELDLLDFIRGCLQAPPEVLPAVVDEV
Ga0334913_007813_16_216	3300034172	Sub-Biocrust Soil	MQTFLVRVWTPAAGEEDDERLRLSGVVEHVASRRRGTFQGELDLLDFIQGCLQAPQGVRHAVADEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102768

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences