Metagenome / Metatranscriptome Family F102760

Basic Information
Family ID	F102760
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	58 residues
Representative Sequence	MGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYTK
Number of Associated Samples	77
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	17.00 %
% of genes near scaffold ends (potentially truncated)	77.23 %
% of genes from short scaffolds (< 2000 bps)	87.13 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Archaea (99.010 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (17.822 % of family members)
Environment Ontology (ENVO)	Unclassified (19.802 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.604 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI11643J12802_114976212 2JGI11643J12802_123909042 3Ga0055471_101332371 4Ga0055471_101639202 5Ga0055471_102216291 6Ga0055470_100045361 7Ga0062589_1013597641 8Ga0062589_1014451861 9Ga0070668_1014054201 10Ga0070674_1015806051 11Ga0075428_1025284811 12Ga0079217_106502261 13Ga0079215_100960053 14Ga0079216_118432232 15Ga0075419_100763731 16Ga0079218_100465671 17Ga0079218_108132211 18Ga0079218_127130922 19Ga0105098_104120421 20Ga0111539_115583241 21Ga0114129_129260741 22Ga0111538_101613581 23Ga0105092_102825361 24Ga0105092_106827922 25Ga0105104_108332081 26Ga0105249_112292042 27Ga0126307_102432062 28Ga0126307_111729051 29Ga0126313_103340541 30Ga0126305_104211771 31Ga0126305_108496621 32Ga0126304_102709802 33Ga0126304_107934041 34Ga0126315_105964201 35Ga0126308_100483851 36Ga0126312_114896321 37Ga0126314_112905881 38Ga0126310_106717221 39Ga0126311_100803381 40Ga0126311_109195832 41Ga0126311_109693622 42Ga0126306_100761202 43Ga0126306_103413532 44Ga0126306_110564181 45Ga0134125_123176851 46Ga0127502_108695821 47Ga0157300_10849131 48Ga0157290_103113022 49Ga0157301_102422021 50Ga0157302_104248282 51Ga0075314_11546571 52Ga0075314_11585211 53Ga0075316_11225611 54Ga0075351_12072061 55Ga0173483_103326561 56Ga0173478_104857471 57Ga0132258_108672491 58Ga0132256_1000265531 59Ga0132256_1010966591 60Ga0132256_1014428312 61Ga0132257_1014941781 62Ga0184611_10598873 63Ga0184624_100736292 64Ga0190269_107241831 65Ga0190268_117209881 66Ga0190270_103973271 67Ga0190274_115246132 68Ga0190271_102089291 69Ga0190271_105015951 70Ga0193741_10025721 71Ga0193741_11060191 72Ga0206349_16253621 73Ga0209109_100377112 74Ga0210076_10558562 75Ga0209386_10987502 76Ga0210115_10700051 77Ga0210143_10081272 78Ga0210114_10552031 79Ga0207642_111549771 80Ga0207712_104917963 81Ga0209819_101221791 82Ga0209593_101443411 83Ga0209481_107270601 84Ga0209486_109581301 85Ga0299907_100554284 86Ga0299913_101188833 87Ga0310887_107207322 88Ga0307405_105341822 89Ga0310900_101921491 90Ga0310900_108087862 91Ga0310900_118339681 92Ga0310885_108031622 93Ga0310903_102745841 94Ga0310903_104437911 95Ga0307416_1006791703 96Ga0307416_1024574992 97Ga0310897_100657933 98Ga0310897_105103111 99Ga0307414_112963662 100Ga0310890_103488623 101Ga0314793_148347_20_169
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI11643J12802_114976212 2JGI11643J12802_123909042 3Ga0055471_101332371 4Ga0070674_1015806051 5Ga0075419_100763731 6Ga0111539_115583241 7Ga0307414_112963662
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI11643J12802_114976212 2JGI11643J12802_123909042 3Ga0055471_101332371 4Ga0070674_1015806051 5Ga0075419_100763731 6Ga0111539_115583241 7Ga0307414_112963662
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.59% β-sheet: 3.39% Coil/Unstructured: 61.02%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF14947	HTH_45	6.93
PF00072	Response_reg	4.95
PF04900	Fcf1	2.97
PF13483	Lactamase_B_3	2.97
PF00578	AhpC-TSA	1.98
PF01918	Alba	0.99
PF07690	MFS_1	0.99
PF13683	rve_3	0.99
PF00571	CBS	0.99
PF17159	MASE3	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1412	rRNA-processing protein FCF1	Translation, ribosomal structure and biogenesis [J]	2.97
COG1581	DNA/RNA-binding protein AlbA/Ssh10b	Transcription [K]	0.99

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	89.11 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	0.99 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	88.12 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	3.96 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	84.16 %
Unclassified	root	N/A	0.99 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.99 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	3.96 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	84.16 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.99 %
Nitrosopumilus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	3.96 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	84.16 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.99 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	2.97 %
Unclassified	root	N/A	0.99 %
unclassified Nitrosopumilus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus	3.96 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	80.20 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.99 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	2.97 %
Nitrosopumilus sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	3.96 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	80.20 %
Unclassified	root	N/A	0.99 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_11497621	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	687	Open in IMG/M
3300000890\|JGI11643J12802_12390904	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	613	Open in IMG/M
3300003987\|Ga0055471_10133237	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	749	Open in IMG/M
3300003987\|Ga0055471_10163920	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	683	Open in IMG/M
3300003987\|Ga0055471_10221629	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	595	Open in IMG/M
3300003992\|Ga0055470_10004536	All Organisms → cellular organisms → Archaea	1913	Open in IMG/M
3300004156\|Ga0062589_101359764	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	690	Open in IMG/M
3300004156\|Ga0062589_101445186	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	673	Open in IMG/M
3300005347\|Ga0070668_101405420	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	636	Open in IMG/M
3300005356\|Ga0070674_101580605	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	591	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.20%
Host-Associated	Host-Associated	19.80%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	16.83%
Plants	Host-Associated → Plants	19.80%
Terrestrial	Environmental → Terrestrial	63.37%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	6.93%
Marine	Environmental → Aquatic → Marine	7.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.83%
Sediment	Environmental → Aquatic → Sediment	1.98%
Soil	Environmental → Terrestrial → Soil	63.37%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.99%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.96%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.99%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	17.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.98%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_114976212	3300000890	Soil	KRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYAK*
JGI11643J12802_123909042	3300000890	Soil	SWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADR
Ga0055471_101332371	3300003987	Natural And Restored Wetlands	HTRELLITMGSWGYGQSLLKQATNLGLIERKVKKEKSARRGKPRIYNSLTNKGKDLVGVADKVGYVK*
Ga0055471_101639202	3300003987	Natural And Restored Wetlands	LMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK*
Ga0055471_102216291	3300003987	Natural And Restored Wetlands	QSLLKRATNLSLIERKVKKEKSAGRGKPRIYNSLTNKGRDLVGLADKVGYVK*
Ga0055470_100045361	3300003992	Natural And Restored Wetlands	HTRELLITMGSWGYGQSLMKKATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDVVGLADKVVYTK*
Ga0062589_1013597641	3300004156	Soil	TMGSWGYGQSLLKRATNLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVGLADKLGYGK
Ga0062589_1014451861	3300004156	Soil	KRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYER*
Ga0070668_1014054201	3300005347	Switchgrass Rhizosphere	TNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYER*
Ga0070674_1015806051	3300005356	Miscanthus Rhizosphere	MGSGYGQSLLKRATNLGLIERKVKKEKSAGRGKPRIYNSLTNKG
Ga0075428_1025284811	3300006844	Populus Rhizosphere	KNKELHTRELLITMGSWGYGQSLMKRATNLGLIARKVKKAKSPGRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0079217_106502261	3300006876	Agricultural Soil	CTQENYLTMGSWGYGQSLLKQATNLGLIERKVKKEKSAGRGKPRIYNSLTNKGRDLVGLADKVGYVK*
Ga0079215_100960053	3300006894	Agricultural Soil	SLMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0079216_118432232	3300006918	Agricultural Soil	MGSWGYGQSLMKRATNLGLIERKVKNEKSRGRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0075419_100763731	3300006969	Populus Rhizosphere	NKELHTRELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYER*
Ga0079218_100465671	3300007004	Agricultural Soil	RELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0079218_108132211	3300007004	Agricultural Soil	TNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0079218_127130922	3300007004	Agricultural Soil	WGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK*
Ga0105098_104120421	3300009081	Freshwater Sediment	MGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYTK*
Ga0111539_115583241	3300009094	Populus Rhizosphere	MGSWGYGQSLLKRATNLGLIERKVKKEKTPGRGKPRIYNSLTNYGREVLGLADKVIYRK*
Ga0114129_129260741	3300009147	Populus Rhizosphere	NKELHTRELLITMGSWGYGQSLMKRATNLGLIARKVKKAKSPGRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0111538_101613581	3300009156	Populus Rhizosphere	ILKKNKELHTRELLITMGSWGYGQSLLKRATNLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVGLADKVIYRK*
Ga0105092_102825361	3300009157	Freshwater Sediment	SWGYGQSLMKRATNLGLIERKVKKEKSPRRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0105092_106827922	3300009157	Freshwater Sediment	VLKKNKELHTRELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK*
Ga0105104_108332081	3300009168	Freshwater Sediment	GQSLLKRATNLGLIERKVKKEKSAGRGKPRIYNSLTNKGRDVVGLADKVVYTK*
Ga0105249_112292042	3300009553	Switchgrass Rhizosphere	MGSWGYGQSLLKRATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDVVGLADKVVYTK*
Ga0126307_102432062	3300009789	Serpentine Soil	LGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVVGLADKVGYIK*
Ga0126307_111729051	3300009789	Serpentine Soil	NKELHTRELLITMGSWGYGQILMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVLVLADKVGYAK*
Ga0126313_103340541	3300009840	Serpentine Soil	LGYEQSLLKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREEVVGLADKVGYIK*
Ga0126305_104211771	3300010036	Serpentine Soil	KRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVLVLADKVGYAK*
Ga0126305_108496621	3300010036	Serpentine Soil	LGLIERKVKKEKTRGRGKPRIYNSLTNKGREVVVLADKVGYAK*
Ga0126304_102709802	3300010037	Serpentine Soil	WGYGQSLMKRATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0126304_107934041	3300010037	Serpentine Soil	LGLIERKVKKEKTRGRGKPRIYNSLTNKGREVVVLADKVGYTK*
Ga0126315_105964201	3300010038	Serpentine Soil	SLLKRATNLGLIERKVKKEKSGGRGKPRIYNSLTNKGREVLVLADKVGYAK*
Ga0126308_100483851	3300010040	Serpentine Soil	SWGYGQILIKRATNLGLVERKVKKEKSRGRGKPRIYNSLTNKGREVLVLADKVGYAK*
Ga0126312_114896321	3300010041	Serpentine Soil	LHTRELLITMGSWGYGQSLLKKATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVVLADKVGYAK*
Ga0126314_112905881	3300010042	Serpentine Soil	ATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREEVVGLADKVGYIK*
Ga0126310_106717221	3300010044	Serpentine Soil	NKELHTRELLITMGSWGYGQSLLKRATNLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVVLADKVGYGK*
Ga0126311_100803381	3300010045	Serpentine Soil	ELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGREVVVLADKVGYAK*
Ga0126311_109195832	3300010045	Serpentine Soil	ELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVLVLADKVGYAK*
Ga0126311_109693622	3300010045	Serpentine Soil	LGLVERKVKKEKSRGRGKPRIYNSLTNKGREVLVLADKVGYAK*
Ga0126306_100761202	3300010166	Serpentine Soil	LGYEQSLLKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREEVVGLADKVGYIT*
Ga0126306_103413532	3300010166	Serpentine Soil	HTRELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0126306_110564181	3300010166	Serpentine Soil	TMGSWGYTQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGKEVVILADKIGKEK
Ga0134125_123176851	3300010371	Terrestrial Soil	MGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK*
Ga0127502_108695821	3300011333	Soil	MKRATNLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVGLADKVGYGK*
Ga0157300_10849131	3300012884	Soil	TNLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVGLADKLGYGK*
Ga0157290_103113022	3300012909	Soil	MKRATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDVVGLADKVVYTK*
Ga0157301_102422021	3300012911	Soil	LHTRELLITMGSWGYGQSLLKRATNLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVGLADKVIYRK*
Ga0157302_104248282	3300012915	Soil	NKELHTRELLIKMGSWGYGQSLMKRATNLGLINRIVKKDKSPGRGKPRIYNSLTNKGREVVGLADKLGYGK*
Ga0075314_11546571	3300014265	Natural And Restored Wetlands	LHTRELLITMGSWGYGQSLMKKATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDLVGLADKVGYVK*
Ga0075314_11585211	3300014265	Natural And Restored Wetlands	MGSWGYGQSLMKRATNLGLIERKVKKDRSRGRGKPRIYNSLTNKGREV
Ga0075316_11225611	3300014314	Natural And Restored Wetlands	ELHTRELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK*
Ga0075351_12072061	3300014318	Natural And Restored Wetlands	ELHTRELLSTIGSWGYGQSLMKRATNLELIERKVKKEKSPRRGKPRIYNSLTNKGREVVGLADKVGYAK*
Ga0173483_103326561	3300015077	Soil	WGYGQSLMKRATNLGLIERKVTKDKCPGRGKPRIYNSLTNKGREVVGLADKLGYGK*
Ga0173478_104857471	3300015201	Soil	MGSWGYGQSLLKRATNLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVGLADKLGYGK*
Ga0132258_108672491	3300015371	Arabidopsis Rhizosphere	RELLITMGSWGYGQSLLKRATNLGLIERKVKKEKTPGRGKPRIYNSLTNYGREVLGLADKVIYRK*
Ga0132256_1000265531	3300015372	Arabidopsis Rhizosphere	SWGYGQSLLKRATNLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVGLADKLGYGK*
Ga0132256_1010966591	3300015372	Arabidopsis Rhizosphere	KRATNLGLIERKVKKEKTPGRGKPRIYNSLTNYGREVLGLADKVIYRK*
Ga0132256_1014428312	3300015372	Arabidopsis Rhizosphere	LITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK*
Ga0132257_1014941781	3300015373	Arabidopsis Rhizosphere	LKRATNLGLIERKVKKDKSPGRGKPRIYNSLTNKGKEVVVLADKVGYAK*
Ga0184611_10598873	3300018067	Groundwater Sediment	ITMGSWGYGQSLLKRATNLGLIERKVKIEKSRGRGKPRIYNSLTNKGREVVGLADKVGYG
Ga0184624_100736292	3300018073	Groundwater Sediment	MGSWGYGQSLLKRATNLGLIERKVKKEKSAGRGKPRIYNSLTNKGKDLVGLADKVGYVK
Ga0190269_107241831	3300018465	Soil	LGGYGQSLLKRATNLGLIERKVKKEKSAGRGKPRIYNSLTNKGRDLVGLADKVGYVK
Ga0190268_117209881	3300018466	Soil	MGSWGYGQSLMKRATNLGLIERKVKKAKSPGRGKPRIYNSLTNKGREVVGLAEKIGYVK
Ga0190270_103973271	3300018469	Soil	HTRELLITMGSWGYGQSLMKKATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDVVGLADKVVYTK
Ga0190274_115246132	3300018476	Soil	WGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYAK
Ga0190271_102089291	3300018481	Soil	LITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK
Ga0190271_105015951	3300018481	Soil	MGSWGYGQSLLKRATNLGLIERKVKKEKSRGRGKPRIYNSLANKGREVVGLADKVGYTK
Ga0193741_10025721	3300019884	Soil	GQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNQGREVLALADKVGYSK
Ga0193741_11060191	3300019884	Soil	GSWGYGQSLLKRATNLGLIERKVKKDKSRGRGKPRIYNSLTNKGREVVGLADKIGYVK
Ga0206349_16253621	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYER
Ga0209109_100377112	3300025160	Soil	MGSWGYGQSLLKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYGK
Ga0210076_10558562	3300025567	Natural And Restored Wetlands	MKRATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGREVVGLADKVGYAK
Ga0209386_10987502	3300025582	Arctic Peat Soil	GSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK
Ga0210115_10700051	3300025791	Natural And Restored Wetlands	MKRATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGREVVGLAEKIGYVK
Ga0210143_10081272	3300025792	Natural And Restored Wetlands	MGSWGYGQSLLKRATNLSLIERKVKKEKSAGRGKPRIYNSLTNKGRDLVGLADKVGYVK
Ga0210114_10552031	3300025795	Natural And Restored Wetlands	TRELLITMGSWGYGQSLLKRATNLSLIERKVKKEKSAGRGKPRIYNSLTNKGRDLVGLADKVGYVK
Ga0207642_111549771	3300025899	Miscanthus Rhizosphere	MGSWGYGQSLLKRATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDLVGLADKVGYVK
Ga0207712_104917963	3300025961	Switchgrass Rhizosphere	MKKATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDLVGLADKVGYVK
Ga0209819_101221791	3300027722	Freshwater Sediment	MGSWGYGQSLVKRATKLGLIERKVKKDKSSGRGKPRIYNSLTNKGREVVGLADKIGYAK
Ga0209593_101443411	3300027743	Freshwater Sediment	LMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK
Ga0209481_107270601	3300027880	Populus Rhizosphere	GYGQSLMKRATNLGLIERKVKKAKSPGRGKPRIYNSLTNKGREVVGLADKVGYAK
Ga0209486_109581301	3300027886	Agricultural Soil	MGSWGYGQSLMKRATNLGLVERKVKKEKSRGRGKPRIYNSLTNKGREVVVLADKVGYAK
Ga0299907_100554284	3300030006	Soil	NKELHTRELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNSLTNKGREVVGLADKVGYAK
Ga0299913_101188833	3300031229	Soil	QSLMKRATNLGLVERKVKKEKSPGRGKPRIYNSLTNKGREVVGLADKVGYAK
Ga0310887_107207322	3300031547	Soil	GYGQSLLKRATNLGLIERKVKKEKSAGRGKPRIYNSLTNKGRDLVGLADKVGYVK
Ga0307405_105341822	3300031731	Rhizosphere	LGYEQSLLKRATNLGLIERKVKKEKSHGRGKPRIYNSLTNKGREEVVGLADKVGYIK
Ga0310900_101921491	3300031908	Soil	KNKELHTRELLITMGSWGYGQSLMKKATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDVVGLADKVVYTK
Ga0310900_108087862	3300031908	Soil	KELHTRELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK
Ga0310900_118339681	3300031908	Soil	ELLITMGSWGYGQSLMKKATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDLVGLADKVGYVK
Ga0310885_108031622	3300031943	Soil	ELLITMGSWGYGQSLMKRATNLALIDRKIKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK
Ga0310903_102745841	3300032000	Soil	MKRATYLGLIERKVKKEKSPGRGKPRIYNSLTNKGREVVGLADKVGYAK
Ga0310903_104437911	3300032000	Soil	ELHTRELLITMGSWGYGQSLMKKATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDVVGLADKVVYTK
Ga0307416_1006791703	3300032002	Rhizosphere	MGSWGYGQSLLKRATSLGLIERKVKKDKSPGRGKPRIYNSLTNKGREVVGLADKLGYVK
Ga0307416_1024574992	3300032002	Rhizosphere	NLGLIERKVKKEKTRGRGKPRIYNSLTNKGREVVVLADKVGYTK
Ga0310897_100657933	3300032003	Soil	HTRELLITMGSWGYGQSLMKRATNLGLIERKVKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK
Ga0310897_105103111	3300032003	Soil	GQSLMKKATNLGLIERKVKKEKSPGRGKPRIYNSLTNKGRDVVGLADKVVYTK
Ga0307414_112963662	3300032004	Rhizosphere	NSRITYNYGKLGYEQSLLKRATNLGLIERKVKKEKSHGRGKPRIYNSLTNKGREEVVGLADKVGYIK
Ga0310890_103488623	3300032075	Soil	VLKTNKELHTRELLITMGSWGYGQSLMKRATNLALIDRKIKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK
Ga0314793_148347_20_169	3300034668	Soil	MKRATNLALIDRKIKKEKSRGRGKPRIYNALTNKGREVVKLADRIGYEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102760

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences