Basic Information | |
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Family ID | F102739 |
Family Type | Metagenome |
Number of Sequences | 101 |
Average Sequence Length | 57 residues |
Representative Sequence | KEFVMTKGHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
Number of Associated Samples | 85 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 1.01 % |
% of genes near scaffold ends (potentially truncated) | 97.03 % |
% of genes from short scaffolds (< 2000 bps) | 92.08 % |
Associated GOLD sequencing projects | 81 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.39 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (52.475 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.624 % of family members) |
Environment Ontology (ENVO) | Unclassified (48.515 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.545 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 14.46% Coil/Unstructured: 85.54% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.39 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Bog Forest Soil Freshwater Sediment Soil Vadose Zone Soil Tropical Forest Soil Peatlands Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Green-Waste Compost Soil Tropical Peatland Bog Forest Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Biofilm Populus Rhizosphere Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
prs_07472930 | 2070309004 | Green-Waste Compost | MTKNKTQRIEAPHAENICWRHDRNPNNPIAGDWSGWSRATMFPGQTFETDL |
Ga0062389_1022357701 | 3300004092 | Bog Forest Soil | QKIETPHAESICWRHDRNPNNPTPGAWSGWSRISLEPGQTAETDL* |
Ga0066388_1077788662 | 3300005332 | Tropical Forest Soil | PNAESICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETDL* |
Ga0070714_1011834821 | 3300005435 | Agricultural Soil | RTQRIEAPKAENICWRHDSNPNNPIAGVWSGWSRATMFPGQTYETEL* |
Ga0070697_1005704681 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | QEFVMSKDHTQRIEAANAENVCWRHDRNPNNPIAGVWSGWSRATMFPGQDFETDL* |
Ga0066698_103237301 | 3300005558 | Soil | TKGHPIRVEAPNGESICWRKDRNPNNPVPGDWSGWSRIPLSPGQTAETDL* |
Ga0066903_1067783842 | 3300005764 | Tropical Forest Soil | TQKIDAPNAESVCWRHDRNPNNPVPGDWSGWSRVPLAPGQTAETDL* |
Ga0075433_117236262 | 3300006852 | Populus Rhizosphere | KGHPMRVEAPNGEGICWHKDRNPNNPVSGDWSGWSRIHPTPGQTVETDL* |
Ga0099829_114109271 | 3300009038 | Vadose Zone Soil | KQFVMTKNHTQKIEAPNGESVCWRHDRNPNNPVPGAWSGWSRVSLFPGQTVETDL* |
Ga0099792_104583371 | 3300009143 | Vadose Zone Soil | TQRIEAPNAESICWRHDRNPNNPIAGVWSGWSRVTMFPGQNTETDL* |
Ga0074045_109530232 | 3300010341 | Bog Forest Soil | DNRGKGFVESREFVMTKNHTQKIEAPNGESICWRHDRNPNNPVAGAWSGWSRVPLAPGQSVETDL* |
Ga0074044_105641942 | 3300010343 | Bog Forest Soil | GNGYVETKDFVMTKGHTEKIEAPNAESICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETDL* |
Ga0126378_104610221 | 3300010361 | Tropical Forest Soil | ATKTFVMTKGHLVRIEAPNAESICWRKDRNPNNPVPGDWSGWSRIPLAPGQTAETDL* |
Ga0126381_1010794561 | 3300010376 | Tropical Forest Soil | HTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETDL* |
Ga0126381_1033975033 | 3300010376 | Tropical Forest Soil | EAPKAENICWRHDRNPNNPVAGVWSGWSRATMFPGQSFETEL* |
Ga0136449_1033816941 | 3300010379 | Peatlands Soil | GDRVNVGYVATKDFVLAKGQTHRAVAPNAETIRWRHDRDPNNPVPGDWSEWRRVTLFPGQTTETDL* |
Ga0150983_117569521 | 3300011120 | Forest Soil | FVMTKNRTQRIEAPKAENICWRHDSNPNNPIAGVWSGWSRATMFPGQTYETEL* |
Ga0150983_127845621 | 3300011120 | Forest Soil | DATKDFAMAKGQTHKVVAPNAETICWRHDRDPTNPVRGDWSEWSRATLFPGQTTETDL* |
Ga0150983_157966471 | 3300011120 | Forest Soil | KSEDCGERANGYVATKDFVMTKGQTHKVVAPNAETICWRHDRDPNNPVTGDWSEWSRATLFPGQTTETDL* |
Ga0137383_108353871 | 3300012199 | Vadose Zone Soil | RIEAPNAESICWRHDRNPNNPVAGAWSGWSRVTMFPGQNTETDL* |
Ga0137386_102865231 | 3300012351 | Vadose Zone Soil | QFVMAKNRTQRIEAPNAESICWRHDRNPNNPVAGAWSGWSRVTMFPGQNTETDL* |
Ga0137395_105251501 | 3300012917 | Vadose Zone Soil | EAPNAESICWRHDRNPNNPIAGVWSGWSRVTMFPGQNTETDL* |
Ga0137396_100706863 | 3300012918 | Vadose Zone Soil | MTKGHPVRVEAPNGESICWRKDRNPNNPVPDDWSGWSRIPLAPGQTAETDL* |
Ga0137419_110997241 | 3300012925 | Vadose Zone Soil | QFVMTKNRTQRIEAPNAESICWRHDRNPNNPIAGVWSGWSRVTMFPGQNTETDL* |
Ga0164301_118079942 | 3300012960 | Soil | TQEFVMTKNKTQRIDAPKAENVCWRHDRNPNNPATGAWSGWSRATMFPGQTFETDL* |
Ga0182041_112180951 | 3300016294 | Soil | FVMAKGQTHKIEAPNAESICWRHDRNPNNPTPGAWSGWSRIPLAPGQTAETDL |
Ga0182032_112414231 | 3300016357 | Soil | KGRTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
Ga0182034_110300961 | 3300016371 | Soil | ISTQQFVMTKNRPQRIEAPNGESICWRHDRNPNNPVSGAWSGWSRVTLFPGQTTETDL |
Ga0182034_117300202 | 3300016371 | Soil | VMAKNRTQRIEAPNAESICWRHDRNPNNPIAGAWSGWSRVTLFPGQTTETEL |
Ga0182040_107622541 | 3300016387 | Soil | KEYVETKDFVMTKGQTMKIQAPKGESICWRHDRNPNNPAPGAWSGWSRAPLAPGQTAETD |
Ga0182038_120789792 | 3300016445 | Soil | QQFVMTKNRPQRIEAPNGESICWRHDRNPNNPVSGAWSGWSRVTLFPGQTTETDL |
Ga0187818_103432301 | 3300017823 | Freshwater Sediment | AVITRSSDCNERSNGYVATKDFVMAKGQTHKVVAPNAESICWRHDRDPNNPVPGDWSEWSRATLFPGQETETDL |
Ga0187782_115086292 | 3300017975 | Tropical Peatland | AGYVTTKEFVMTKNDSHDIVAPNAEIICWRHDRDPNNPVKGDWSDWSRATLFPGQSVETE |
Ga0187765_112798061 | 3300018060 | Tropical Peatland | DNRGNGYVATKQFIMTKGRTQKIEAPNAESICWRHDRNPNNPTPGDWSGWSRIPLAPGQTAETDL |
Ga0066662_110744151 | 3300018468 | Grasslands Soil | VMTKNRTQRIEAPKAENVCWRHDRNPNNPVAGVWSGWSRATMFPGQTYETDL |
Ga0210407_108648921 | 3300020579 | Soil | TQKIEAPNAESICWRHDRNPNNPTPGAWSGWSRIPLAPGQTAETDL |
Ga0210405_114106121 | 3300021171 | Soil | NKTQRIDAPKAENVCWRHDRNPNNPATGAWSGWSRATMFPGQTFETDL |
Ga0213873_100681892 | 3300021358 | Rhizosphere | NGYIETKEFVMTKGHTEKIEAPHGEAICWRHDRNPNNPVPGVWSGWSRVPLAPGQTVETD |
Ga0213872_104349192 | 3300021361 | Rhizosphere | SADCDNRGNGYIETKEFVMTKGHTEKIEAPHGEAICWRHDRNPNNPVPGVWSGWSRVPLAPGQTVETDL |
Ga0210385_107448101 | 3300021402 | Soil | LDNPTWDRVNVEAVITKSEDCGERANGYVATKDFVMTKGQTHKVVAPNAETICWRHDRDPNNPVTGDWSEWSRATLFPGQTTETDL |
Ga0210397_105693183 | 3300021403 | Soil | QEFVMTKSRTQRIEAPKAENICWRHDSNPNNPIAGVWSGWSRATMFPGQTYETEL |
Ga0210390_114368401 | 3300021474 | Soil | DCDDRQNGYVATKEFVMTKDHTHEVVAPNAETICWRHDRDPNNPVAGDWSEWSRATLFPGQTSETDL |
Ga0187846_101823601 | 3300021476 | Biofilm | YVSTKEFVMTKGRTQRIEAPNAESICWRHDRNPNNPIPGAWSGWSRVPLAPGQTAETDL |
Ga0126371_113248661 | 3300021560 | Tropical Forest Soil | TQKIEAPNAESICWRHDRNPNNPVPGDWSGWSRVPLAPGQTAETDL |
Ga0126371_136271262 | 3300021560 | Tropical Forest Soil | GQTQKIEVSHGEAICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
Ga0207700_107798393 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | EAANAENVCWRHDRNPNNPIAGVWSGWSRATMFPGQDFETDL |
Ga0207944_10223743 | 3300027105 | Forest Soil | SRTQRIEAPKAENICWRHDSNPNNPIAGVWSGWSRATMFPGQTYETEL |
Ga0208241_10199501 | 3300027297 | Forest Soil | STQEFVMTKDRTQRIEAPKAENICWRHDSNPNNPIAGVWSGWSRATMFPGQTYETEL |
Ga0209248_101369791 | 3300027729 | Bog Forest Soil | DDFVMTKGHSHNVVAPNAETICWRHDRDPNNPVAGDWSGWSRATLFPGQTTETDL |
Ga0209448_101183201 | 3300027783 | Bog Forest Soil | TQRIEAPKAENICWRHDPNPNNPVAGAWSGWSRATMFPGQTFETDL |
Ga0209488_106518382 | 3300027903 | Vadose Zone Soil | QQFVMAKNRTQRIEAPNAESICWRHDRNPNNPIAGVWSGWSRVTMFPGQNTETDL |
Ga0170824_1045089762 | 3300031231 | Forest Soil | ATKKFVMTKGHTQRIEAPNGESVCWRHDRNPNNPVPGDWSGWSRVPLAPGQTAETDL |
Ga0170819_145670791 | 3300031469 | Forest Soil | ADCDNRGKDYVATKKFVMTKGHTQRIEAPNGESVCWRHDRNPNNPVPGDWSGWSRVPLAPGQTAETDL |
Ga0170818_1137076061 | 3300031474 | Forest Soil | VATKKFVMTKGHTQKIEAPNAESICWRHDRNPNNPVPGDWSGWSRVPLAPGQTAETDL |
Ga0310915_106549521 | 3300031573 | Soil | RTQKIEAPSAESICWRHDRNPNNPAPGAWSGWSRVPLAPGQTAETDL |
Ga0318542_100865151 | 3300031668 | Soil | VMTKDHTQRIEAPNAENVCWRHDRNPNNPIAGVWSGWSRAVMFPGQTFETDL |
Ga0318561_100899713 | 3300031679 | Soil | TKEFVMTKGHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
Ga0318561_106948521 | 3300031679 | Soil | EYVATKQFVMTKGQTRKIEAPNAESICWRHDRNPNNPTPGAWSGWSRIPLAPGQTAETDL |
Ga0310686_1037430751 | 3300031708 | Soil | ITRSSDCDDRQNGYVATDNFIMTKGHSHDVVAPNAETICWRHDRDPNNPVAGDWSGWSRATLFPGQTTETDL |
Ga0318496_102220871 | 3300031713 | Soil | VATKQFVMTKGHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETDL |
Ga0307474_104602282 | 3300031718 | Hardwood Forest Soil | TLDNPTWDRVNVEAVITKSSDCNERSNGYVATKDFVMTKGQSHKVEAPNAETICWRHDRDPNNPVHGDWSEWSRATLFPGQTTETDL |
Ga0306917_105627341 | 3300031719 | Soil | NKGRTQRIEAPNAENICWRHDRNPNNPVAGVWSGWSRVTLFPGQTTETEL |
Ga0318501_100279721 | 3300031736 | Soil | PNAESICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETEL |
Ga0306918_111672782 | 3300031744 | Soil | DCDNRGKDYVATKEFVMTKGRTQKIEAPSAESICWRHDRNPNNPAPGAWSGWSRVPLAPGQTAETDL |
Ga0306918_114277031 | 3300031744 | Soil | KEFVMTKGHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
Ga0318502_104547091 | 3300031747 | Soil | GKEYVATKQFVMTKGQTRKIEAPNAESICWRHDRNPNNPTPGAWSGWSRIPLAPGQTAETDL |
Ga0318492_106517191 | 3300031748 | Soil | PYWGQVNVQAVITTSTDCSNRGAGYVTTKEFVMTKNHNHDVVAPNAEMICWRHDRDPNNPVKGDWSDWSRATLFPGQSVETDL |
Ga0318509_101767622 | 3300031768 | Soil | DYVATKQFVMTKGHAQKIEAPNAEGICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETDL |
Ga0318546_110463451 | 3300031771 | Soil | KHFVMTKDHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVPLTPGQTAETDL |
Ga0318566_102356411 | 3300031779 | Soil | VATKQFVMTKGHAQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETEL |
Ga0318548_100914811 | 3300031793 | Soil | VITNSADCDNRGKDYVATKQFVMTKGQTRKIEAPNAESICWRHDRNPNNPTPGAWSGWSRVPLAPGQTAETDL |
Ga0318548_103643952 | 3300031793 | Soil | GQTQRVEAPNAENICWRHDRNPNNPIAGVWSGWSRATMFPGQDYETDL |
Ga0318557_105115841 | 3300031795 | Soil | QNGYVSSDEFVMAKGHTHSIVAPNAETICWRHDRDPNNPVAGDWSGWSRATLFPGQTTETDL |
Ga0318568_102477011 | 3300031819 | Soil | KGQTVKVQAPKGESICWRHDRNPNNPASGAWSGWSRAPLAPGQTAETDL |
Ga0318564_102688671 | 3300031831 | Soil | TKGQTMKIQAPKGESICWRHDRNPNNPAPGAWSGWSRAPLAPGQTAETDL |
Ga0310917_103245771 | 3300031833 | Soil | MTKGQTRKIEAPNAESICWRHDRNPNNPTPGAWSGWSRVPLAPGQTAETDL |
Ga0310917_106838031 | 3300031833 | Soil | DCDNRGKDYVATKQFVMTKGRTQKIEAPNAESICWRHDRNPNNPVPGDWSGWSRVPLAPGQTAETDL |
Ga0318517_102885742 | 3300031835 | Soil | GKDYVATKQFVMTKGQTRKIEAPNAESICWRHDRNPNNPTPGAWSGWSRVPLAPGQTAETDL |
Ga0318511_101437301 | 3300031845 | Soil | TKQFVMTKGHTQKIEAPNAESICWRHDRNPNNPVSGAWSGWSRIPLAPGQTAETDL |
Ga0318511_104300191 | 3300031845 | Soil | TKELVMRKGQTQRIEAPNAENICWRHDRNPNNPIAGVWSGWSRATMFPGQDYETDL |
Ga0318536_103397772 | 3300031893 | Soil | ITNSADCDNRGKDYVATKQFVMTKGQTRKIEAPNAESICWRHDRNPNNPTPGAWSGWSRVPLAPGQTAETDL |
Ga0318551_100229031 | 3300031896 | Soil | NRGKEYVATKQFVMTKGHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETDL |
Ga0306923_105676071 | 3300031910 | Soil | TNSADCDNRGKDYVATKEFVMTKGRTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
Ga0306923_124290051 | 3300031910 | Soil | NGYVETKDFVMRKGQTQKLDVSHGEAICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETD |
Ga0306921_100389258 | 3300031912 | Soil | ERQNGYVSSDEFVMAKGHTHSIVAPNAETICWRHDRDPNNPVAGDWSGWSRATLFPGQTTETDL |
Ga0306921_112346401 | 3300031912 | Soil | NSADCDNRGKEFVETKEFVMTKGQTMKIQAPKGESICWRHDRNPNNPAPGAWSGWSRAPLAPGQTAETDL |
Ga0306921_114789291 | 3300031912 | Soil | VMTKGQTHKIEAPNAESICWRHDRNPNNPTPGAWSGWTRIPLAPGQTAETDL |
Ga0310916_102831542 | 3300031942 | Soil | DYVATKQFVMTKGQTHKIEAPNAESICWRHDRNPNNPTPGAWSGWTRIPLAPGQTAETDL |
Ga0310916_104737501 | 3300031942 | Soil | EFVMTKGHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVSLAPGQTAETDL |
Ga0310916_109871301 | 3300031942 | Soil | RGAGYVTTKEFVMTKNHSQDIVAPNAEMICWRHDRDPNNPVKGDWSDWSRATLFPGQSVETDL |
Ga0310909_102768643 | 3300031947 | Soil | VMTKNRPQRIEAPNGESICWRHDRNPNNPVSGAWSGWSRVTLFPGQTTETDL |
Ga0318531_101708091 | 3300031981 | Soil | NRGKDYVATKEFVMTKGHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
Ga0306922_122435442 | 3300032001 | Soil | ATKEFVMTKGRTQKIEAPSAESICWRHDRNPNNPAPGAWSGWSRVPLAPGQTAETDL |
Ga0318549_103969392 | 3300032041 | Soil | GHAQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRIPLAPGQTAETEL |
Ga0318525_100405083 | 3300032089 | Soil | NRGKEYVATKQFVMTKGHTQKIEAPNAESICWRHDRNPNNPVSGAWSGWSRIPLAPGQTAETDL |
Ga0318577_104541671 | 3300032091 | Soil | LTLNDPIWDRINVQVVITKSSDCDERQNGYVSSDEFVMAKGHTHSIVAPNAETICWRHDRDPNNPVAGDWSGWSRATLFPGQTTETDL |
Ga0318577_105359302 | 3300032091 | Soil | GHTQKIEAPNAESICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
Ga0306920_1031172081 | 3300032261 | Soil | DCDNRGNGYVETKEFAMRKGQTQQIEVSHGEAICWRHDRNPNNPVPGVWSGWSRVPLAPGQTAETDL |
Ga0335075_109126932 | 3300032896 | Soil | SDCDERQNGYVATKDFTMTKGQSHHVVAPNAETICWRHDRDPNNPVPGDWSEWSRATLFPGQTAETDL |
Ga0335073_102498743 | 3300033134 | Soil | GYVATRDFVMTKGQSHKVVAPNAETICWRHDRDPNNPVPGDWSEWSRATLFPGQSTETDL |
Ga0310914_116595072 | 3300033289 | Soil | LEVSHGEAICWRHDRNPNNPVPGAWSGWSRVPLAPGQTAETDL |
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